HEADER TRANSCRIPTION 24-NOV-20 7KUF TITLE TRANSCRIPTION ACTIVATION SUBCOMPLEX WITH WHIB7 BOUND TO SIGMAAR4-RNAP TITLE 2 BETA FLAP TIP CHIMERA AND DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TRANSCRIPTIONAL REGULATOR WHIB7; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA POLYMERASE SIGMA FACTOR, DNA-DIRECTED RNA POLYMERASE COMPND 7 SUBUNIT BETA CHIMERA; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: RNAP SUBUNIT BETA,RNA POLYMERASE SUBUNIT BETA,TRANSCRIPTASE COMPND 10 SUBUNIT BETA; COMPND 11 EC: 2.7.7.6; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*CP*AP*GP*AP*AP*AP*AP*TP*CP*GP*GP*TP*TP*GP*TP*GP*GP*T)-3'); COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (5'- COMPND 20 D(*GP*AP*CP*CP*AP*CP*AP*AP*CP*CP*GP*AP*TP*TP*TP*TP*CP*T)-3'); COMPND 21 CHAIN: D; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 ATCC: 25618 / H37RV; SOURCE 5 GENE: WHIB7, RV3197A, RV3197.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(GOLD); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 11 ORGANISM_TAXID: 1773; SOURCE 12 ATCC: 25618 / H37RV; SOURCE 13 GENE: SIGA, ERS007670_01286, ERS007681_03833, ERS007688_01862; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(GOLD); SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 20 ORGANISM_TAXID: 1773; SOURCE 21 MOL_ID: 4; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 24 ORGANISM_TAXID: 1773 KEYWDS REDOX-SENSITIVE, IRON-SULFUR CLUSTER, TRANSCRIPTION, ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR T.WAN,M.HOROVA,D.G.BELTRAN,S.R.LI,L.M.ZHANG REVDAT 3 18-OCT-23 7KUF 1 REMARK REVDAT 2 06-OCT-21 7KUF 1 JRNL REVDAT 1 30-JUN-21 7KUF 0 JRNL AUTH T.WAN,M.HOROVA,D.G.BELTRAN,S.LI,H.X.WONG,L.M.ZHANG JRNL TITL STRUCTURAL INSIGHTS INTO THE FUNCTIONAL DIVERGENCE OF JRNL TITL 2 WHIB-LIKE PROTEINS IN MYCOBACTERIUM TUBERCULOSIS. JRNL REF MOL.CELL V. 81 2887 2021 JRNL REFN ISSN 1097-2765 JRNL PMID 34171298 JRNL DOI 10.1016/J.MOLCEL.2021.06.002 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 14305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9900 - 4.4500 0.99 2949 170 0.1775 0.2090 REMARK 3 2 4.4500 - 3.5300 0.99 2836 109 0.2241 0.2612 REMARK 3 3 3.5300 - 3.0900 0.93 2613 140 0.2686 0.3182 REMARK 3 4 3.0900 - 2.8000 0.99 2723 158 0.3674 0.3918 REMARK 3 5 2.8000 - 2.6000 0.89 2494 113 0.4839 0.5065 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.465 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 121.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2101 REMARK 3 ANGLE : 0.945 2998 REMARK 3 CHIRALITY : 0.053 335 REMARK 3 PLANARITY : 0.006 261 REMARK 3 DIHEDRAL : 31.721 845 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8726 -2.9062 -16.2682 REMARK 3 T TENSOR REMARK 3 T11: 1.3876 T22: 1.3084 REMARK 3 T33: 0.9966 T12: -0.2093 REMARK 3 T13: -0.0878 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 8.2288 L22: 3.5076 REMARK 3 L33: 6.9278 L12: 1.2299 REMARK 3 L13: -3.0542 L23: 3.9408 REMARK 3 S TENSOR REMARK 3 S11: 1.5103 S12: -1.8403 S13: 0.4493 REMARK 3 S21: 0.6055 S22: -0.8854 S23: 0.4910 REMARK 3 S31: -0.5526 S32: -0.1826 S33: -0.7325 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1050 -13.0374 -16.9575 REMARK 3 T TENSOR REMARK 3 T11: 0.8521 T22: 1.4763 REMARK 3 T33: 0.8280 T12: -0.0665 REMARK 3 T13: -0.0183 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 9.7945 L22: 9.9852 REMARK 3 L33: 2.1288 L12: 3.9542 REMARK 3 L13: -0.4368 L23: -0.1798 REMARK 3 S TENSOR REMARK 3 S11: -0.4449 S12: 0.8309 S13: 0.8989 REMARK 3 S21: 0.4127 S22: -0.0009 S23: 1.2448 REMARK 3 S31: 1.0384 S32: -1.4274 S33: -0.0256 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7486 -13.4759 -23.4379 REMARK 3 T TENSOR REMARK 3 T11: 0.9052 T22: 1.4401 REMARK 3 T33: 0.7185 T12: -0.0459 REMARK 3 T13: 0.0038 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.5051 L22: 4.7785 REMARK 3 L33: 2.5839 L12: 0.2611 REMARK 3 L13: -2.4276 L23: -1.4050 REMARK 3 S TENSOR REMARK 3 S11: 1.0740 S12: 2.1245 S13: -1.2246 REMARK 3 S21: -0.0399 S22: -0.3549 S23: -0.4923 REMARK 3 S31: 0.5972 S32: 1.1245 S33: -0.5109 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3841 -16.3600 -13.0280 REMARK 3 T TENSOR REMARK 3 T11: 0.7893 T22: 1.7541 REMARK 3 T33: 0.8333 T12: 0.1300 REMARK 3 T13: -0.1052 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 5.9880 L22: 5.1626 REMARK 3 L33: 8.5089 L12: 2.4502 REMARK 3 L13: -1.0464 L23: -0.2060 REMARK 3 S TENSOR REMARK 3 S11: -0.4980 S12: -1.5781 S13: 0.0010 REMARK 3 S21: 0.2087 S22: -0.2188 S23: -0.8999 REMARK 3 S31: 0.6670 S32: 2.0635 S33: 0.6247 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4049 -25.7095 -18.5737 REMARK 3 T TENSOR REMARK 3 T11: 1.7202 T22: 1.6310 REMARK 3 T33: 0.8743 T12: 0.4327 REMARK 3 T13: 0.1015 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 3.1298 L22: 8.4730 REMARK 3 L33: 4.1288 L12: 5.0765 REMARK 3 L13: 0.6132 L23: 1.3427 REMARK 3 S TENSOR REMARK 3 S11: -0.8309 S12: 0.7914 S13: -1.9505 REMARK 3 S21: -2.7554 S22: 0.1810 S23: -0.3461 REMARK 3 S31: 1.5412 S32: 1.8089 S33: 0.7482 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0004 -32.3053 -26.9449 REMARK 3 T TENSOR REMARK 3 T11: 1.7318 T22: 1.1363 REMARK 3 T33: 0.8382 T12: 0.0848 REMARK 3 T13: -0.0351 T23: 0.0697 REMARK 3 L TENSOR REMARK 3 L11: 6.3037 L22: 2.0975 REMARK 3 L33: 6.0640 L12: -1.1942 REMARK 3 L13: 2.6036 L23: 2.6082 REMARK 3 S TENSOR REMARK 3 S11: 0.7099 S12: 0.3547 S13: -0.1806 REMARK 3 S21: 0.4600 S22: 0.1800 S23: -1.2516 REMARK 3 S31: 0.9870 S32: -0.6000 S33: -0.7088 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 455 THROUGH 466 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5349 0.0455 -1.2083 REMARK 3 T TENSOR REMARK 3 T11: 1.5324 T22: 1.4223 REMARK 3 T33: 1.1312 T12: -0.0719 REMARK 3 T13: -0.0314 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 3.3810 L22: 3.4752 REMARK 3 L33: 2.5850 L12: 2.8430 REMARK 3 L13: -0.7565 L23: 0.9530 REMARK 3 S TENSOR REMARK 3 S11: -0.7642 S12: -0.0306 S13: 1.5569 REMARK 3 S21: 0.5979 S22: 1.4685 S23: 1.0404 REMARK 3 S31: -1.1360 S32: -0.5042 S33: -0.7962 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 467 THROUGH 499 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8550 -13.5344 4.4451 REMARK 3 T TENSOR REMARK 3 T11: 1.0367 T22: 1.1382 REMARK 3 T33: 0.4655 T12: 0.0846 REMARK 3 T13: -0.1150 T23: -0.0704 REMARK 3 L TENSOR REMARK 3 L11: 8.4955 L22: 7.7431 REMARK 3 L33: 6.4208 L12: 1.7322 REMARK 3 L13: -2.9970 L23: -0.8274 REMARK 3 S TENSOR REMARK 3 S11: 0.5482 S12: -1.2575 S13: 0.3195 REMARK 3 S21: 1.4395 S22: 0.0424 S23: -0.0839 REMARK 3 S31: 0.7204 S32: 0.2451 S33: -0.4831 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 500 THROUGH 515 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4575 -19.0296 -2.3119 REMARK 3 T TENSOR REMARK 3 T11: 1.0611 T22: 1.2827 REMARK 3 T33: 0.5672 T12: 0.1022 REMARK 3 T13: -0.0857 T23: -0.0790 REMARK 3 L TENSOR REMARK 3 L11: 8.5406 L22: 6.5067 REMARK 3 L33: 7.1971 L12: 3.0197 REMARK 3 L13: -4.0720 L23: -0.8222 REMARK 3 S TENSOR REMARK 3 S11: 0.3676 S12: -1.5241 S13: -0.8428 REMARK 3 S21: 1.1338 S22: -0.2978 S23: -0.7345 REMARK 3 S31: 0.9988 S32: 1.6115 S33: 0.1167 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 516 THROUGH 535 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1040 -4.7746 -4.6132 REMARK 3 T TENSOR REMARK 3 T11: 1.3274 T22: 2.0020 REMARK 3 T33: 0.9328 T12: -0.4044 REMARK 3 T13: 0.0919 T23: -0.5302 REMARK 3 L TENSOR REMARK 3 L11: 0.2714 L22: 1.7477 REMARK 3 L33: 5.5984 L12: -0.4951 REMARK 3 L13: -0.2576 L23: 2.4731 REMARK 3 S TENSOR REMARK 3 S11: 1.5955 S12: -2.0796 S13: 1.8149 REMARK 3 S21: 0.7559 S22: 0.8508 S23: -1.2503 REMARK 3 S31: -2.4247 S32: 1.4321 S33: -0.9106 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 536 THROUGH 547 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8191 -8.8672 5.2889 REMARK 3 T TENSOR REMARK 3 T11: 1.2939 T22: 2.3385 REMARK 3 T33: 0.9724 T12: -0.2877 REMARK 3 T13: -0.1285 T23: -0.3755 REMARK 3 L TENSOR REMARK 3 L11: 1.8967 L22: 6.1696 REMARK 3 L33: 7.4008 L12: 0.7907 REMARK 3 L13: -2.1953 L23: -0.9592 REMARK 3 S TENSOR REMARK 3 S11: -0.2411 S12: -2.4202 S13: -0.2098 REMARK 3 S21: 1.9005 S22: -0.0242 S23: 0.2438 REMARK 3 S31: 0.0418 S32: 1.4031 S33: -0.5360 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8434 -39.7360 -29.2477 REMARK 3 T TENSOR REMARK 3 T11: 2.6426 T22: 1.8054 REMARK 3 T33: 0.9349 T12: -0.2243 REMARK 3 T13: -0.3353 T23: -0.3143 REMARK 3 L TENSOR REMARK 3 L11: 3.2374 L22: 5.2333 REMARK 3 L33: 9.6982 L12: 0.9781 REMARK 3 L13: 3.3278 L23: 2.6322 REMARK 3 S TENSOR REMARK 3 S11: 1.0522 S12: -0.8723 S13: -0.7784 REMARK 3 S21: 1.0184 S22: -0.7390 S23: 0.2301 REMARK 3 S31: 0.4376 S32: -2.7238 S33: -0.2119 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5645 -30.7710 -16.8745 REMARK 3 T TENSOR REMARK 3 T11: 2.1355 T22: 1.3648 REMARK 3 T33: 0.7623 T12: 0.0759 REMARK 3 T13: -0.2770 T23: -0.1470 REMARK 3 L TENSOR REMARK 3 L11: 5.4939 L22: 5.4223 REMARK 3 L33: 8.8951 L12: 2.1116 REMARK 3 L13: 1.6902 L23: 6.6722 REMARK 3 S TENSOR REMARK 3 S11: 1.3006 S12: -0.0410 S13: -0.4433 REMARK 3 S21: -0.0372 S22: -0.5814 S23: -0.7111 REMARK 3 S31: 0.7865 S32: -0.4066 S33: -0.7170 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1328 -33.4508 4.5499 REMARK 3 T TENSOR REMARK 3 T11: 2.4988 T22: 1.6595 REMARK 3 T33: 0.8791 T12: 0.2576 REMARK 3 T13: -0.2982 T23: 0.1651 REMARK 3 L TENSOR REMARK 3 L11: 7.8183 L22: 4.0081 REMARK 3 L33: 7.6402 L12: 0.7289 REMARK 3 L13: 3.7257 L23: 2.0340 REMARK 3 S TENSOR REMARK 3 S11: 0.9600 S12: -1.7803 S13: -1.7980 REMARK 3 S21: 0.2898 S22: 0.5181 S23: -0.1916 REMARK 3 S31: 3.7332 S32: 0.8452 S33: -1.4724 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6194 -27.3798 12.7198 REMARK 3 T TENSOR REMARK 3 T11: 1.9716 T22: 1.8436 REMARK 3 T33: 0.8406 T12: 0.4965 REMARK 3 T13: -0.3360 T23: 0.2804 REMARK 3 L TENSOR REMARK 3 L11: 3.6480 L22: 5.5458 REMARK 3 L33: 4.7764 L12: 0.8666 REMARK 3 L13: 0.7186 L23: 1.1024 REMARK 3 S TENSOR REMARK 3 S11: 0.3161 S12: -1.0282 S13: -0.6401 REMARK 3 S21: -0.2213 S22: 1.2847 S23: 1.4847 REMARK 3 S31: 1.4739 S32: -0.2244 S33: -0.3076 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5773 -33.6683 -15.8317 REMARK 3 T TENSOR REMARK 3 T11: 1.9879 T22: 1.0345 REMARK 3 T33: 0.7804 T12: -0.0692 REMARK 3 T13: -0.1721 T23: -0.0734 REMARK 3 L TENSOR REMARK 3 L11: 5.5815 L22: 2.8249 REMARK 3 L33: 2.6469 L12: -1.4223 REMARK 3 L13: -3.3005 L23: -0.3739 REMARK 3 S TENSOR REMARK 3 S11: 0.0770 S12: -0.0367 S13: -0.7680 REMARK 3 S21: 0.0622 S22: 0.3553 S23: -0.0507 REMARK 3 S31: 2.1348 S32: -0.8447 S33: -0.3993 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000253170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : FLAT SI RH COATED M0, REMARK 200 KIRKPATRICK-BAEZ FLAT BENT SI M1 REMARK 200 & M2 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14675 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 26.40 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7KUG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2-0.3 M NH4H2PO4, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.58267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.79133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.79133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.58267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 THR A 5 REMARK 465 VAL A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 8 REMARK 465 GLN A 9 REMARK 465 THR A 10 REMARK 465 PRO A 11 REMARK 465 ARG A 12 REMARK 465 GLN A 13 REMARK 465 ARG A 14 REMARK 465 LEU A 15 REMARK 465 ASP A 89 REMARK 465 ALA A 90 REMARK 465 VAL A 91 REMARK 465 ALA A 92 REMARK 465 MET B 438 REMARK 465 ALA B 439 REMARK 465 HIS B 440 REMARK 465 HIS B 441 REMARK 465 HIS B 442 REMARK 465 HIS B 443 REMARK 465 HIS B 444 REMARK 465 HIS B 445 REMARK 465 VAL B 446 REMARK 465 ALA B 447 REMARK 465 VAL B 448 REMARK 465 ASP B 449 REMARK 465 ALA B 450 REMARK 465 VAL B 451 REMARK 465 SER B 452 REMARK 465 PHE B 453 REMARK 465 THR B 454 REMARK 465 TYR B 526 REMARK 465 LEU B 527 REMARK 465 ASP B 528 REMARK 465 GLY B 529 REMARK 465 SER B 530 REMARK 465 SER B 531 REMARK 465 GLY B 532 REMARK 465 SER B 533 REMARK 465 LYS B 548 REMARK 465 ALA B 549 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 78 -58.13 69.31 REMARK 500 PRO A 82 -173.88 -69.83 REMARK 500 LEU B 456 -49.69 68.24 REMARK 500 LEU B 523 52.77 -116.30 REMARK 500 PHE B 545 -161.46 -101.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 101 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 SF4 A 101 S1 152.4 REMARK 620 3 SF4 A 101 S3 101.9 103.8 REMARK 620 4 SF4 A 101 S4 78.7 104.6 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 101 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 43 SG REMARK 620 2 SF4 A 101 S1 112.1 REMARK 620 3 SF4 A 101 S2 135.6 104.3 REMARK 620 4 SF4 A 101 S3 90.9 103.5 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 101 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 SF4 A 101 S2 98.7 REMARK 620 3 SF4 A 101 S3 139.5 104.3 REMARK 620 4 SF4 A 101 S4 102.1 103.9 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 101 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 SF4 A 101 S1 87.3 REMARK 620 3 SF4 A 101 S2 109.7 104.3 REMARK 620 4 SF4 A 101 S4 140.3 104.7 103.8 REMARK 620 N 1 2 3 DBREF 7KUF A 1 92 UNP Q6MX01 WHB7A_MYCTU 1 92 DBREF1 7KUF B 446 528 UNP A0A654TMB9_MYCTX DBREF2 7KUF B A0A654TMB9 295 377 DBREF 7KUF B 535 549 UNP A1KGE7 RPOB_MYCBP 815 829 DBREF 7KUF C 1 18 PDB 7KUF 7KUF 1 18 DBREF 7KUF D 1 18 PDB 7KUF 7KUF 1 18 SEQADV 7KUF MET B 438 UNP A0A654TMB INITIATING METHIONINE SEQADV 7KUF ALA B 439 UNP A0A654TMB EXPRESSION TAG SEQADV 7KUF HIS B 440 UNP A0A654TMB EXPRESSION TAG SEQADV 7KUF HIS B 441 UNP A0A654TMB EXPRESSION TAG SEQADV 7KUF HIS B 442 UNP A0A654TMB EXPRESSION TAG SEQADV 7KUF HIS B 443 UNP A0A654TMB EXPRESSION TAG SEQADV 7KUF HIS B 444 UNP A0A654TMB EXPRESSION TAG SEQADV 7KUF HIS B 445 UNP A0A654TMB EXPRESSION TAG SEQADV 7KUF GLY B 529 UNP A0A654TMB LINKER SEQADV 7KUF SER B 530 UNP A0A654TMB LINKER SEQADV 7KUF SER B 531 UNP A0A654TMB LINKER SEQADV 7KUF GLY B 532 UNP A0A654TMB LINKER SEQADV 7KUF SER B 533 UNP A0A654TMB LINKER SEQADV 7KUF GLY B 534 UNP A0A654TMB LINKER SEQRES 1 A 92 MET SER VAL LEU THR VAL PRO ARG GLN THR PRO ARG GLN SEQRES 2 A 92 ARG LEU PRO VAL LEU PRO CYS HIS VAL GLY ASP PRO ASP SEQRES 3 A 92 LEU TRP PHE ALA ASP THR PRO ALA GLY LEU GLU VAL ALA SEQRES 4 A 92 LYS THR LEU CYS VAL SER CYS PRO ILE ARG ARG GLN CYS SEQRES 5 A 92 LEU ALA ALA ALA LEU GLN ARG ALA GLU PRO TRP GLY VAL SEQRES 6 A 92 TRP GLY GLY GLU ILE PHE ASP GLN GLY SER ILE VAL SER SEQRES 7 A 92 HIS LYS ARG PRO ARG GLY ARG PRO ARG LYS ASP ALA VAL SEQRES 8 A 92 ALA SEQRES 1 B 112 MET ALA HIS HIS HIS HIS HIS HIS VAL ALA VAL ASP ALA SEQRES 2 B 112 VAL SER PHE THR LEU LEU GLN ASP GLN LEU GLN SER VAL SEQRES 3 B 112 LEU ASP THR LEU SER GLU ARG GLU ALA GLY VAL VAL ARG SEQRES 4 B 112 LEU ARG PHE GLY LEU THR ASP GLY GLN PRO ARG THR LEU SEQRES 5 B 112 ASP GLU ILE GLY GLN VAL TYR GLY VAL THR ARG GLU ARG SEQRES 6 B 112 ILE ARG GLN ILE GLU SER LYS THR MET SER LYS LEU ARG SEQRES 7 B 112 HIS PRO SER ARG SER GLN VAL LEU ARG ASP TYR LEU ASP SEQRES 8 B 112 GLY SER SER GLY SER GLY THR PRO GLU GLU ARG LEU LEU SEQRES 9 B 112 ARG ALA ILE PHE GLY GLU LYS ALA SEQRES 1 C 18 DC DA DG DA DA DA DA DT DC DG DG DT DT SEQRES 2 C 18 DG DT DG DG DT SEQRES 1 D 18 DG DA DC DC DA DC DA DA DC DC DG DA DT SEQRES 2 D 18 DT DT DT DC DT HET SF4 A 101 8 HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 5 SF4 FE4 S4 HELIX 1 AA1 ASP A 24 ALA A 30 5 7 HELIX 2 AA2 THR A 32 CYS A 43 1 12 HELIX 3 AA3 VAL A 44 CYS A 46 5 3 HELIX 4 AA4 ILE A 48 ARG A 59 1 12 HELIX 5 AA5 LEU B 456 ASP B 465 1 10 HELIX 6 AA6 SER B 468 GLY B 480 1 13 HELIX 7 AA7 THR B 488 GLY B 497 1 10 HELIX 8 AA8 THR B 499 HIS B 516 1 18 HELIX 9 AA9 HIS B 516 GLN B 521 1 6 HELIX 10 AB1 VAL B 522 ARG B 524 5 3 HELIX 11 AB2 THR B 535 PHE B 545 1 11 SHEET 1 AA1 3 TRP A 63 TRP A 66 0 SHEET 2 AA1 3 GLU A 69 ASP A 72 -1 O GLU A 69 N TRP A 66 SHEET 3 AA1 3 SER A 75 ILE A 76 -1 O SER A 75 N ASP A 72 LINK SG CYS A 20 FE2 SF4 A 101 1555 1555 2.27 LINK SG CYS A 43 FE4 SF4 A 101 1555 1555 2.26 LINK SG CYS A 46 FE1 SF4 A 101 1555 1555 2.28 LINK SG CYS A 52 FE3 SF4 A 101 1555 1555 2.27 CRYST1 69.254 69.254 167.374 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014440 0.008337 0.000000 0.00000 SCALE2 0.000000 0.016673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005975 0.00000