HEADER RNA 25-NOV-20 7KUO TITLE FANA MODIFICATION AT 3' END OF RNA PRIMER COMPLEX WITH GUANOSINE TITLE 2 DINUCLEOTIDE LIGAND G(5')PPP(5')G COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R((LCC)P*(LCC)P*(LCC)P*(LCG) COMPND 3 P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(GFL))-3'); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA, NONENZYMATIC RNA EXTENSION EXPDTA X-RAY DIFFRACTION AUTHOR Z.FANG,C.GIURGIU,J.W.SZOSTAK REVDAT 4 18-OCT-23 7KUO 1 REMARK REVDAT 3 23-MAR-22 7KUO 1 JRNL REVDAT 2 20-OCT-21 7KUO 1 JRNL REVDAT 1 08-SEP-21 7KUO 0 JRNL AUTH C.GIURGIU,Z.FANG,H.R.M.AITKEN,S.C.KIM,L.PAZIENZA,S.MITTAL, JRNL AUTH 2 J.W.SZOSTAK JRNL TITL STRUCTURE-ACTIVITY RELATIONSHIPS IN NONENZYMATIC JRNL TITL 2 TEMPLATE-DIRECTED RNA SYNTHESIS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 60 22925 2021 JRNL REFN ESSN 1521-3773 JRNL PMID 34428345 JRNL DOI 10.1002/ANIE.202109714 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 5536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.383 REMARK 3 FREE R VALUE TEST SET COUNT : 298 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 378 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 598 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01200 REMARK 3 B22 (A**2) : 0.01200 REMARK 3 B33 (A**2) : -0.03900 REMARK 3 B12 (A**2) : 0.00600 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.275 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.801 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 788 ; 0.027 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 350 ; 0.028 ; 0.025 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1196 ; 3.366 ; 2.144 REMARK 3 BOND ANGLES OTHERS (DEGREES): 822 ; 3.786 ; 3.208 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 142 ; 0.520 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 400 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 148 ; 0.001 ; 0.023 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 94 ; 0.112 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 37 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 317 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 69 ; 0.222 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 788 ; 2.296 ; 2.915 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 789 ; 2.294 ; 2.914 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1196 ; 3.247 ; 4.416 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1197 ; 3.246 ; 4.415 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7KUO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1000253080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977408 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5536 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.20 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5UEE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM MALONATE PH 7.0, 50 MM REMARK 280 MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 104 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 103 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1A GP3 A 101 O HOH A 201 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LKC A 1 O3' LCC A 2 P -0.077 REMARK 500 LKC B 1 O3' LCC B 2 P -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LKC A 1 C3' - O3' - P ANGL. DEV. = 10.2 DEGREES REMARK 500 LCC A 3 C3' - O3' - P ANGL. DEV. = 16.1 DEGREES REMARK 500 LCG A 4 O3' - P - OP1 ANGL. DEV. = 7.3 DEGREES REMARK 500 LKC B 1 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 LCC B 3 C3' - O3' - P ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GP3 A 101 O3D REMARK 620 2 GP3 A 101 O2D 76.8 REMARK 620 3 GP3 A 101 O3D 0.0 76.8 REMARK 620 4 GP3 A 101 O2D 76.8 0.0 76.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GP3 B 101 O3D REMARK 620 2 GP3 B 101 O2D 78.3 REMARK 620 3 GP3 B 101 O3D 111.4 119.5 REMARK 620 4 GP3 B 101 O2D 162.3 90.6 62.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 222 O REMARK 620 2 HOH A 222 O 95.1 REMARK 620 3 HOH B 225 O 98.7 157.1 REMARK 620 4 HOH B 225 O 116.5 96.2 93.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 207 O REMARK 620 2 HOH A 207 O 91.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 204 O REMARK 620 2 HOH B 204 O 95.2 REMARK 620 N 1 DBREF 7KUO A 1 19 PDB 7KUO 7KUO 1 19 DBREF 7KUO B 1 19 PDB 7KUO 7KUO 1 19 SEQRES 1 A 14 LKC LCC LCC LCG A C U U A A G U C SEQRES 2 A 14 GFL SEQRES 1 B 14 LKC LCC LCC LCG A C U U A A G U C SEQRES 2 B 14 GFL HET LKC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCG A 4 24 HET GFL A 19 23 HET LKC B 1 19 HET LCC B 2 22 HET LCC B 3 22 HET LCG B 4 24 HET GFL B 19 23 HET GP3 A 101 51 HET MG A 102 1 HET MG A 103 1 HET MG A 104 1 HET GP3 B 101 51 HET MG B 102 1 HET MG B 103 1 HETNAM LKC 4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2, HETNAM 2 LKC 5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN- HETNAM 3 LKC 2(1H)-ONE HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5- HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCG PHOSPHATE HETNAM GFL 2-AMINO-9-(2-DEOXY-2-FLUORO-5-O-PHOSPHONO-BETA-D- HETNAM 2 GFL ARABINOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE HETNAM GP3 DIGUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN GFL 2'-FLUORO-2-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 1 LKC 2(C11 H15 N3 O5) FORMUL 1 LCC 4(C11 H16 N3 O8 P) FORMUL 1 LCG 2(C11 H14 N5 O8 P) FORMUL 1 GFL 2(C10 H13 F N5 O7 P) FORMUL 3 GP3 2(C20 H27 N10 O18 P3) FORMUL 4 MG 5(MG 2+) FORMUL 10 HOH *47(H2 O) LINK O3' LKC A 1 P LCC A 2 1555 1555 1.53 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.55 LINK O3' LCC A 3 P LCG A 4 1555 1555 1.63 LINK O3' LCG A 4 P A A 9 1555 1555 1.60 LINK O3' C A 17 P GFL A 19 1555 1555 1.61 LINK O3' LKC B 1 P LCC B 2 1555 1555 1.54 LINK O3' LCC B 2 P LCC B 3 1555 1555 1.55 LINK O3' LCC B 3 P LCG B 4 1555 1555 1.63 LINK O3' LCG B 4 P A B 9 1555 1555 1.61 LINK O3' C B 17 P GFL B 19 1555 1555 1.62 LINK O3D GP3 A 101 MG MG B 102 1555 1555 2.07 LINK O2D GP3 A 101 MG MG B 102 1555 1555 2.07 LINK O3D GP3 A 101 MG MG B 102 1555 2745 2.45 LINK O2D GP3 A 101 MG MG B 102 1555 3875 2.58 LINK MG MG A 102 O3D GP3 B 101 1555 1555 2.07 LINK MG MG A 102 O2D GP3 B 101 1555 1555 2.08 LINK MG MG A 102 O3D GP3 B 101 1555 2745 2.46 LINK MG MG A 102 O2D GP3 B 101 1555 2745 2.59 LINK MG MG A 103 O HOH A 222 1555 1555 2.13 LINK MG MG A 103 O HOH A 222 1555 2745 2.58 LINK MG MG A 103 O HOH B 225 1555 1555 2.56 LINK MG MG A 103 O HOH B 225 1555 2745 2.21 LINK MG MG A 104 O HOH A 207 1555 1555 2.81 LINK MG MG A 104 O HOH A 207 1555 3875 2.81 LINK MG MG B 103 O HOH B 204 1555 1555 2.78 LINK MG MG B 103 O HOH B 204 1555 2745 2.78 CRYST1 49.072 49.072 81.254 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020378 0.011765 0.000000 0.00000 SCALE2 0.000000 0.023531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012307 0.00000 HETATM 1 N1 LKC A 1 84.623 26.025 201.251 1.00 24.69 N0 HETATM 2 C2 LKC A 1 83.644 25.119 201.431 1.00 23.08 C0 HETATM 3 N3 LKC A 1 82.383 25.492 201.567 1.00 23.13 N0 HETATM 4 C4 LKC A 1 82.071 26.788 201.486 1.00 24.27 C0 HETATM 5 C5 LKC A 1 83.027 27.825 201.318 1.00 25.78 C0 HETATM 6 C6 LKC A 1 84.343 27.409 201.211 1.00 22.80 C0 HETATM 7 O2 LKC A 1 83.916 23.935 201.483 1.00 20.76 O0 HETATM 8 N4 LKC A 1 80.809 27.103 201.620 1.00 23.97 N0 HETATM 9 C1' LKC A 1 86.021 25.513 201.158 1.00 21.91 C0 HETATM 10 C2' LKC A 1 86.367 24.868 199.824 1.00 21.68 C0 HETATM 11 C3' LKC A 1 86.684 26.139 199.024 1.00 20.96 C0 HETATM 12 C4' LKC A 1 87.737 26.586 200.009 1.00 20.68 C0 HETATM 13 O4' LKC A 1 86.872 26.713 201.240 1.00 21.64 O0 HETATM 14 O3' LKC A 1 87.187 25.908 197.666 1.00 22.44 O0 HETATM 15 C5' LKC A 1 88.459 27.858 199.592 1.00 20.79 C0 HETATM 16 O5' LKC A 1 87.441 28.890 199.665 1.00 18.12 O0 HETATM 17 C5A LKC A 1 82.713 29.234 201.240 1.00 24.68 C0 HETATM 18 O2' LKC A 1 87.657 24.198 199.992 1.00 21.59 O0 HETATM 19 C6' LKC A 1 88.665 25.370 200.244 1.00 20.40 C0 HETATM 20 O5' LCC A 2 85.797 24.061 196.833 1.00 20.03 O0 HETATM 21 C5' LCC A 2 86.628 22.843 196.702 1.00 22.53 C0 HETATM 22 C4' LCC A 2 85.597 21.777 197.069 1.00 23.05 C0 HETATM 23 O4' LCC A 2 85.044 22.078 198.334 1.00 19.98 O0 HETATM 24 C1' LCC A 2 83.749 21.400 198.233 1.00 21.78 C0 HETATM 25 N1 LCC A 2 82.581 22.263 198.423 1.00 20.89 N0 HETATM 26 C6 LCC A 2 82.678 23.618 198.272 1.00 18.89 C0 HETATM 27 C5 LCC A 2 81.562 24.414 198.443 1.00 19.47 C0 HETATM 28 C5M LCC A 2 81.735 25.822 198.234 1.00 19.24 C0 HETATM 29 C4 LCC A 2 80.368 23.776 198.850 1.00 19.93 C0 HETATM 30 N4 LCC A 2 79.255 24.540 199.038 1.00 19.01 N0 HETATM 31 N3 LCC A 2 80.300 22.413 198.998 1.00 19.71 N0 HETATM 32 C2 LCC A 2 81.413 21.668 198.767 1.00 21.58 C0 HETATM 33 O2 LCC A 2 81.398 20.432 198.884 1.00 21.07 O0 HETATM 34 C3' LCC A 2 84.411 21.747 196.105 1.00 21.58 C0 HETATM 35 C2' LCC A 2 83.742 20.732 196.886 1.00 21.05 C0 HETATM 36 O2' LCC A 2 84.698 19.659 196.979 1.00 22.73 O0 HETATM 37 O3' LCC A 2 84.758 21.281 194.784 1.00 21.66 O0 HETATM 38 C6' LCC A 2 86.066 20.318 197.047 1.00 23.25 C0 HETATM 39 P LCC A 2 86.426 25.562 196.384 1.00 20.06 P0 HETATM 40 O1P LCC A 2 85.295 26.432 196.094 1.00 18.77 O0 HETATM 41 O2P LCC A 2 87.495 25.320 195.481 1.00 18.42 O0 HETATM 42 O5' LCC A 3 82.726 20.386 193.707 1.00 19.73 O0 HETATM 43 C5' LCC A 3 83.051 18.985 193.767 1.00 20.65 C0 HETATM 44 C4' LCC A 3 81.736 18.416 194.325 1.00 21.01 C0 HETATM 45 O4' LCC A 3 81.362 18.850 195.652 1.00 19.68 O0 HETATM 46 C1' LCC A 3 79.852 18.734 195.598 1.00 19.64 C0 HETATM 47 N1 LCC A 3 79.173 20.043 195.685 1.00 19.17 N0 HETATM 48 C6 LCC A 3 79.823 21.247 195.383 1.00 18.56 C0 HETATM 49 C5 LCC A 3 79.186 22.451 195.521 1.00 19.37 C0 HETATM 50 C5M LCC A 3 79.940 23.606 195.166 1.00 20.15 C0 HETATM 51 C4 LCC A 3 77.853 22.439 196.010 1.00 19.41 C0 HETATM 52 N4 LCC A 3 77.187 23.593 196.217 1.00 18.17 N0 HETATM 53 N3 LCC A 3 77.260 21.294 196.309 1.00 18.36 N0 HETATM 54 C2 LCC A 3 77.913 20.102 196.142 1.00 19.63 C0 HETATM 55 O2 LCC A 3 77.352 19.046 196.390 1.00 18.52 O0 HETATM 56 C3' LCC A 3 80.516 18.779 193.478 1.00 20.16 C0 HETATM 57 C2' LCC A 3 79.572 18.031 194.330 1.00 20.34 C0 HETATM 58 O2' LCC A 3 80.131 16.743 194.423 1.00 20.93 O0 HETATM 59 O3' LCC A 3 80.585 18.251 192.169 1.00 23.50 O0 HETATM 60 C6' LCC A 3 81.695 16.918 194.370 1.00 20.65 C0 HETATM 61 P LCC A 3 83.921 21.469 193.492 1.00 21.86 P0 HETATM 62 O1P LCC A 3 83.348 22.814 193.369 1.00 18.88 O0 HETATM 63 O2P LCC A 3 84.719 20.955 192.406 1.00 18.32 O0 HETATM 64 P LCG A 4 80.028 18.690 190.697 1.00 22.50 P0 HETATM 65 OP1 LCG A 4 80.614 18.021 189.506 1.00 21.44 O0 HETATM 66 O5' LCG A 4 78.449 18.385 190.906 1.00 22.08 O0 HETATM 67 C5' LCG A 4 78.003 17.035 190.907 1.00 21.37 C0 HETATM 68 C3' LCG A 4 75.748 18.047 190.477 1.00 21.73 C0 HETATM 69 C6' LCG A 4 75.807 15.727 191.068 1.00 21.08 C0 HETATM 70 N9 LCG A 4 75.007 19.496 192.977 1.00 20.68 N0 HETATM 71 C8 LCG A 4 76.068 20.317 192.967 1.00 21.21 C0 HETATM 72 C4 LCG A 4 73.959 20.233 193.295 1.00 19.95 C0 HETATM 73 N7 LCG A 4 75.699 21.559 193.295 1.00 20.37 N0 HETATM 74 C5 LCG A 4 74.378 21.489 193.505 1.00 22.41 C0 HETATM 75 C6 LCG A 4 73.497 22.450 193.853 1.00 21.66 C0 HETATM 76 C2' LCG A 4 74.468 17.721 191.277 1.00 21.70 C0 HETATM 77 O6 LCG A 4 73.865 23.600 194.055 1.00 19.90 O0 HETATM 78 C4' LCG A 4 76.556 17.045 191.282 1.00 21.11 C0 HETATM 79 C1' LCG A 4 75.003 17.982 192.670 1.00 19.73 C0 HETATM 80 C2 LCG A 4 71.766 20.850 193.757 1.00 20.13 C0 HETATM 81 N1 LCG A 4 72.167 22.140 193.964 1.00 19.91 N0 HETATM 82 O4' LCG A 4 76.390 17.447 192.645 1.00 19.85 O0 HETATM 83 OP2 LCG A 4 80.241 20.112 190.844 1.00 24.36 O0 HETATM 84 N2 LCG A 4 70.460 20.552 193.915 1.00 20.86 N0 HETATM 85 N3 LCG A 4 72.680 19.909 193.430 1.00 19.13 N0 HETATM 86 O2' LCG A 4 74.340 16.326 191.103 1.00 22.88 O0 HETATM 87 O3' LCG A 4 75.779 17.717 189.116 1.00 20.53 O0