HEADER OXIDOREDUCTASE 03-DEC-20 7KXA TITLE CRYSTAL STRUCTURE OF ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH] TITLE 2 (INHA) FROM MYCOBACTERIUM KANSASII IN COMPLEX WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYKAA.00472.A.B1; COMPND 5 EC: 1.3.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM KANSASII; SOURCE 3 ORGANISM_TAXID: 1768; SOURCE 4 GENE: INHA, BZL29_3124, BZL30_8369; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MYKAA.00472.A.B1 KEYWDS SSGCID, MYCOBACTERIUM KANSASII, INHA, ENOYL-[ACYL-CARRIER-PROTEIN] KEYWDS 2 REDUCTASE, NAD, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 7KXA 1 REMARK REVDAT 1 16-DEC-20 7KXA 0 JRNL AUTH J.ABENDROTH,P.S.HORANYI,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE JRNL TITL 2 [NADH] (INHA) FROM MYCOBACTERIUM KANSASII IN COMPLEX WITH JRNL TITL 3 NAD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC4-4035 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8700 - 4.3400 1.00 2772 149 0.1513 0.1571 REMARK 3 2 4.3300 - 3.4400 1.00 2596 157 0.1271 0.1302 REMARK 3 3 3.4400 - 3.0100 1.00 2573 130 0.1477 0.1669 REMARK 3 4 3.0100 - 2.7300 1.00 2579 120 0.1498 0.1656 REMARK 3 5 2.7300 - 2.5400 1.00 2541 136 0.1549 0.1841 REMARK 3 6 2.5400 - 2.3900 1.00 2506 141 0.1527 0.1760 REMARK 3 7 2.3900 - 2.2700 1.00 2514 142 0.1514 0.1849 REMARK 3 8 2.2700 - 2.1700 1.00 2464 159 0.1475 0.1937 REMARK 3 9 2.1700 - 2.0900 1.00 2497 157 0.1624 0.1911 REMARK 3 10 2.0900 - 2.0100 1.00 2484 148 0.1647 0.2083 REMARK 3 11 2.0100 - 1.9500 1.00 2494 120 0.1716 0.2232 REMARK 3 12 1.9500 - 1.8900 1.00 2516 126 0.1818 0.2063 REMARK 3 13 1.8900 - 1.8500 1.00 2470 139 0.1998 0.2618 REMARK 3 14 1.8500 - 1.8000 0.99 2474 138 0.2250 0.2735 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.168 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.949 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2147 REMARK 3 ANGLE : 0.936 2929 REMARK 3 CHIRALITY : 0.061 333 REMARK 3 PLANARITY : 0.011 399 REMARK 3 DIHEDRAL : 12.719 814 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4418 -39.9864 -16.5967 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.4115 REMARK 3 T33: 0.2463 T12: -0.0025 REMARK 3 T13: -0.0048 T23: 0.0723 REMARK 3 L TENSOR REMARK 3 L11: 1.9357 L22: 2.7322 REMARK 3 L33: 1.6861 L12: -0.1510 REMARK 3 L13: 0.6552 L23: -0.4916 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: -0.1211 S13: -0.0439 REMARK 3 S21: 0.0540 S22: -0.1032 S23: -0.3428 REMARK 3 S31: -0.0828 S32: 0.4263 S33: 0.0892 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1881 -30.5662 -25.2478 REMARK 3 T TENSOR REMARK 3 T11: 0.2255 T22: 0.4849 REMARK 3 T33: 0.2900 T12: -0.0790 REMARK 3 T13: -0.0215 T23: 0.0658 REMARK 3 L TENSOR REMARK 3 L11: 3.0838 L22: 1.2099 REMARK 3 L33: 2.0451 L12: -0.0451 REMARK 3 L13: -0.6806 L23: -0.1051 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.3819 S13: 0.1768 REMARK 3 S21: -0.0905 S22: -0.1380 S23: -0.3061 REMARK 3 S31: -0.1649 S32: 0.4686 S33: 0.1172 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4979 -28.6876 -17.7446 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: 0.2302 REMARK 3 T33: 0.2051 T12: -0.0638 REMARK 3 T13: -0.0178 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 3.5626 L22: 3.0606 REMARK 3 L33: 1.5177 L12: -2.6457 REMARK 3 L13: -0.6132 L23: 1.3382 REMARK 3 S TENSOR REMARK 3 S11: -0.1519 S12: -0.2537 S13: 0.2464 REMARK 3 S21: 0.1138 S22: 0.1818 S23: -0.2604 REMARK 3 S31: -0.1245 S32: 0.3787 S33: -0.1063 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3331 -32.2945 -23.0999 REMARK 3 T TENSOR REMARK 3 T11: 0.1725 T22: 0.2551 REMARK 3 T33: 0.1954 T12: -0.0166 REMARK 3 T13: -0.0361 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 1.9506 L22: 1.2449 REMARK 3 L33: 1.4093 L12: -0.6091 REMARK 3 L13: -0.4670 L23: 0.2110 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: 0.0578 S13: 0.0794 REMARK 3 S21: -0.0408 S22: -0.0603 S23: -0.1581 REMARK 3 S31: -0.0889 S32: 0.1969 S33: 0.0520 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0761 -35.1648 -19.2255 REMARK 3 T TENSOR REMARK 3 T11: 0.1648 T22: 0.2480 REMARK 3 T33: 0.2390 T12: -0.0017 REMARK 3 T13: -0.0135 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.1081 L22: 1.3364 REMARK 3 L33: 0.1463 L12: -0.3187 REMARK 3 L13: -0.0245 L23: 0.1628 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: -0.0667 S13: 0.1087 REMARK 3 S21: 0.0277 S22: 0.0338 S23: -0.0306 REMARK 3 S31: -0.1112 S32: 0.1018 S33: 0.0004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1806 -38.4706 -1.7239 REMARK 3 T TENSOR REMARK 3 T11: 0.2910 T22: 0.5231 REMARK 3 T33: 0.2920 T12: 0.0809 REMARK 3 T13: -0.0481 T23: -0.0450 REMARK 3 L TENSOR REMARK 3 L11: 1.0254 L22: 5.4193 REMARK 3 L33: 0.6855 L12: -2.2253 REMARK 3 L13: -0.8208 L23: 1.6677 REMARK 3 S TENSOR REMARK 3 S11: -0.2101 S12: -0.3483 S13: 0.0712 REMARK 3 S21: 0.5275 S22: 0.2620 S23: -0.2168 REMARK 3 S31: -0.0027 S32: -0.1902 S33: -0.0659 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0804 -48.3302 -16.8986 REMARK 3 T TENSOR REMARK 3 T11: 0.1496 T22: 0.2113 REMARK 3 T33: 0.2140 T12: 0.0419 REMARK 3 T13: -0.0043 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 1.1284 L22: 1.3345 REMARK 3 L33: 2.5756 L12: -0.0964 REMARK 3 L13: 0.4054 L23: -0.3902 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: -0.1222 S13: -0.0045 REMARK 3 S21: 0.0646 S22: -0.0702 S23: -0.1057 REMARK 3 S31: 0.0472 S32: 0.3250 S33: 0.0953 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37516 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.43 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.64 REMARK 200 R MERGE FOR SHELL (I) : 0.62600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6UDF, APO STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RIGAKUREAGENTS JCSG+ SCREEN C9: 25% REMARK 280 (V/V) PROPANEDIOL-1,2, 10% (V/V) GLYCEROL, 100MM POTASSIUM REMARK 280 PHOSPHATE MONOBASIC / SODIUM PHOSPHATE DIBASIC PH 6.5: REMARK 280 MYKAA.00472.A.B1.PS38576 AT 27.08MG/ML + 4.5MM NAD: TRAY 318760 REMARK 280 C9: CRYO: 20% EG: PUCK NSO5-4., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.02000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.01000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.02000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.01000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.02000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 47.01000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 94.02000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.01000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -48.83500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -84.58470 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -47.01000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 -48.83500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 -84.58470 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -47.01000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 462 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 506 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 57 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 16 -33.07 -131.72 REMARK 500 ASP A 42 -59.28 76.82 REMARK 500 ARG A 43 70.79 -105.07 REMARK 500 ALA A 124 -56.52 -126.25 REMARK 500 ALA A 157 -42.30 75.47 REMARK 500 ASN A 159 -117.16 45.37 REMARK 500 ALA A 260 73.99 -113.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 49 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 663 DISTANCE = 6.16 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 223 O REMARK 620 2 GLN A 224 O 74.2 REMARK 620 3 ALA A 226 O 86.5 99.4 REMARK 620 4 HOH A 548 O 66.7 125.0 114.6 REMARK 620 5 HOH A 614 O 148.3 79.4 80.9 144.8 REMARK 620 6 HOH A 620 O 116.9 168.1 86.3 60.3 91.3 REMARK 620 7 HOH A 630 O 92.6 85.6 174.4 60.1 102.5 89.2 REMARK 620 N 1 2 3 4 5 6 DBREF1 7KXA A 1 269 UNP A0A1V3XDT0_MYCKA DBREF2 7KXA A A0A1V3XDT0 1 269 SEQADV 7KXA MET A -7 UNP A0A1V3XDT EXPRESSION TAG SEQADV 7KXA ALA A -6 UNP A0A1V3XDT EXPRESSION TAG SEQADV 7KXA HIS A -5 UNP A0A1V3XDT EXPRESSION TAG SEQADV 7KXA HIS A -4 UNP A0A1V3XDT EXPRESSION TAG SEQADV 7KXA HIS A -3 UNP A0A1V3XDT EXPRESSION TAG SEQADV 7KXA HIS A -2 UNP A0A1V3XDT EXPRESSION TAG SEQADV 7KXA HIS A -1 UNP A0A1V3XDT EXPRESSION TAG SEQADV 7KXA HIS A 0 UNP A0A1V3XDT EXPRESSION TAG SEQRES 1 A 277 MET ALA HIS HIS HIS HIS HIS HIS MET ALA GLY LEU LEU SEQRES 2 A 277 GLU GLY LYS ARG ILE LEU VAL SER GLY ILE ILE THR ASP SEQRES 3 A 277 SER SER ILE ALA PHE HIS ILE ALA ARG VAL ALA GLN GLU SEQRES 4 A 277 GLN GLY ALA GLN LEU VAL LEU THR GLY PHE ASP ARG LEU SEQRES 5 A 277 ARG LEU ILE GLN ARG ILE THR ASP ARG LEU PRO GLU LYS SEQRES 6 A 277 ALA PRO LEU LEU GLU LEU ASP VAL GLN ASN ASP GLU HIS SEQRES 7 A 277 LEU ALA THR LEU ALA ASP ARG VAL VAL GLU VAL ILE GLY SEQRES 8 A 277 GLU GLY ASN LYS LEU ASP GLY LEU VAL HIS SER ILE GLY SEQRES 9 A 277 PHE MET PRO GLN SER GLY MET GLY ILE ASN PRO PHE PHE SEQRES 10 A 277 ASP ALA PRO TYR GLU ASP VAL SER LYS GLY ILE HIS ILE SEQRES 11 A 277 SER ALA TYR SER TYR ALA SER MET ALA LYS ALA LEU LEU SEQRES 12 A 277 PRO ILE MET ASN ARG GLY GLY SER ILE VAL GLY MET ASP SEQRES 13 A 277 PHE ASP PRO SER ARG ALA MET PRO ALA TYR ASN TRP MET SEQRES 14 A 277 THR VAL ALA LYS SER ALA LEU GLU SER VAL ASN ARG PHE SEQRES 15 A 277 VAL ALA ARG GLU ALA GLY LYS TYR GLY VAL ARG SER ASN SEQRES 16 A 277 LEU VAL ALA ALA GLY PRO ILE ARG THR LEU ALA MET ALA SEQRES 17 A 277 ALA ILE VAL GLY GLY ALA LEU GLY GLU GLU ALA GLY ALA SEQRES 18 A 277 GLN ILE GLN LEU LEU GLU GLU GLY TRP ASP GLN ARG ALA SEQRES 19 A 277 PRO ILE GLY TRP ASN MET LYS ASP PRO THR PRO VAL ALA SEQRES 20 A 277 LYS THR VAL CYS ALA LEU LEU SER GLU TRP LEU PRO ALA SEQRES 21 A 277 THR THR GLY ASP ILE ILE PHE ALA ASP GLY GLY ALA HIS SEQRES 22 A 277 THR GLN LEU LEU HET NAD A 301 44 HET K A 302 1 HET EDO A 303 4 HET PO4 A 304 5 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM K POTASSIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 K K 1+ FORMUL 4 EDO C2 H6 O2 FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *263(H2 O) HELIX 1 AA1 SER A 20 GLN A 32 1 13 HELIX 2 AA2 ARG A 43 ASP A 52 1 10 HELIX 3 AA3 ASN A 67 GLY A 83 1 17 HELIX 4 AA4 PRO A 99 MET A 103 5 5 HELIX 5 AA5 PRO A 107 ALA A 111 5 5 HELIX 6 AA6 PRO A 112 ALA A 124 1 13 HELIX 7 AA7 ALA A 124 LEU A 135 1 12 HELIX 8 AA8 TYR A 158 LYS A 181 1 24 HELIX 9 AA9 THR A 196 GLY A 204 1 9 HELIX 10 AB1 GLY A 208 ALA A 226 1 19 HELIX 11 AB2 PRO A 235 SER A 247 1 13 HELIX 12 AB3 GLY A 263 GLN A 267 5 5 SHEET 1 AA1 7 LEU A 60 GLU A 62 0 SHEET 2 AA1 7 GLN A 35 GLY A 40 1 N LEU A 38 O LEU A 61 SHEET 3 AA1 7 ARG A 9 SER A 13 1 N VAL A 12 O VAL A 37 SHEET 4 AA1 7 LEU A 88 HIS A 93 1 O ASP A 89 N ARG A 9 SHEET 5 AA1 7 MET A 138 ASP A 148 1 O VAL A 145 N HIS A 93 SHEET 6 AA1 7 ARG A 185 ALA A 191 1 O VAL A 189 N ASP A 148 SHEET 7 AA1 7 ASP A 256 ALA A 260 1 O ILE A 258 N LEU A 188 LINK O ASP A 223 K K A 302 1555 1555 2.75 LINK O GLN A 224 K K A 302 1555 1555 2.93 LINK O ALA A 226 K K A 302 1555 1555 2.62 LINK K K A 302 O AHOH A 548 1555 1555 3.06 LINK K K A 302 O HOH A 614 1555 1555 2.75 LINK K K A 302 O HOH A 620 1555 1555 3.01 LINK K K A 302 O HOH A 630 1555 1555 2.67 CRYST1 97.670 97.670 141.030 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010239 0.005911 0.000000 0.00000 SCALE2 0.000000 0.011822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007091 0.00000