HEADER HYDROLASE 03-DEC-20 7KXB TITLE CRYSTAL STRUCTURE OF SARS-COV-2 NSP3 MACRODOMAIN COMPLEX WITH PARG329 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MACRODOMAIN; COMPND 5 SYNONYM: NSP3,PL2-PRO,PAPAIN-LIKE PROTEASE,PAPAIN-LIKE PROTEINASE,PL- COMPND 6 PRO; COMPND 7 EC: 3.4.19.121, 3.4.22.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 KEYWDS HYDROLASE, SARS-COV-2, MACRODOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR A.ARVAI,C.A.BROSEY,S.BOMMAGANI,T.LINK,D.E.JONES,Z.AHMED,J.A.TAINER REVDAT 4 18-OCT-23 7KXB 1 REMARK REVDAT 3 16-JUN-21 7KXB 1 JRNL REVDAT 2 10-MAR-21 7KXB 1 JRNL REVDAT 1 17-FEB-21 7KXB 0 JRNL AUTH C.A.BROSEY,J.H.HOUL,P.KATSONIS,L.P.F.BALAPITI-MODARAGE, JRNL AUTH 2 S.BOMMAGANI,A.ARVAI,D.MOIANI,A.BACOLLA,T.LINK,L.S.WARDEN, JRNL AUTH 3 O.LICHTARGE,D.E.JONES,Z.AHMED,J.A.TAINER JRNL TITL TARGETING SARS-COV-2 NSP3 MACRODOMAIN STRUCTURE WITH JRNL TITL 2 INSIGHTS FROM HUMAN POLY(ADP-RIBOSE) GLYCOHYDROLASE (PARG) JRNL TITL 3 STRUCTURES WITH INHIBITORS. JRNL REF PROG.BIOPHYS.MOL.BIOL. V. 163 171 2021 JRNL REFN ISSN 0079-6107 JRNL PMID 33636189 JRNL DOI 10.1016/J.PBIOMOLBIO.2021.02.002 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 74399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.680 REMARK 3 FREE R VALUE TEST SET COUNT : 3479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5500 - 4.5300 1.00 3155 164 0.1287 0.1274 REMARK 3 2 4.5300 - 3.6000 0.99 3130 156 0.1081 0.1380 REMARK 3 3 3.5900 - 3.1400 0.99 3134 160 0.1359 0.2082 REMARK 3 4 3.1400 - 2.8500 1.00 3123 145 0.1535 0.1893 REMARK 3 5 2.8500 - 2.6500 1.00 3149 146 0.1535 0.1894 REMARK 3 6 2.6500 - 2.4900 0.99 3150 158 0.1644 0.1567 REMARK 3 7 2.4900 - 2.3700 0.99 3107 150 0.1651 0.1576 REMARK 3 8 2.3700 - 2.2700 0.94 2948 155 0.1637 0.2203 REMARK 3 9 2.2700 - 2.1800 0.94 2971 138 0.1763 0.2297 REMARK 3 10 2.1800 - 2.1000 0.97 3049 156 0.1595 0.1685 REMARK 3 11 2.1000 - 2.0400 0.98 3089 154 0.1503 0.2187 REMARK 3 12 2.0400 - 1.9800 0.96 2979 140 0.1574 0.2169 REMARK 3 13 1.9800 - 1.9300 0.89 2841 144 0.1944 0.2263 REMARK 3 14 1.9300 - 1.8800 0.87 2700 138 0.2543 0.3076 REMARK 3 15 1.8800 - 1.8400 0.86 2787 126 0.2080 0.2390 REMARK 3 16 1.8400 - 1.8000 0.89 2726 130 0.2039 0.2150 REMARK 3 17 1.8000 - 1.7600 0.88 2810 139 0.2128 0.2027 REMARK 3 18 1.7600 - 1.7300 0.87 2746 129 0.2191 0.2581 REMARK 3 19 1.7300 - 1.7000 0.86 2729 134 0.2381 0.2436 REMARK 3 20 1.7000 - 1.6700 0.83 2609 121 0.2486 0.3177 REMARK 3 21 1.6700 - 1.6400 0.83 2600 135 0.2624 0.2685 REMARK 3 22 1.6400 - 1.6200 0.81 2597 132 0.2766 0.2853 REMARK 3 23 1.6200 - 1.5900 0.77 2387 123 0.2935 0.2883 REMARK 3 24 1.5900 - 1.5700 0.73 2302 99 0.3258 0.3708 REMARK 3 25 1.5700 - 1.5500 0.65 2102 107 0.3619 0.4455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9496 -30.9368 26.8997 REMARK 3 T TENSOR REMARK 3 T11: 0.3327 T22: 0.4479 REMARK 3 T33: 0.3062 T12: -0.1020 REMARK 3 T13: 0.0891 T23: -0.1345 REMARK 3 L TENSOR REMARK 3 L11: 8.8301 L22: 3.6165 REMARK 3 L33: 6.1855 L12: 2.1123 REMARK 3 L13: -4.0122 L23: -4.5942 REMARK 3 S TENSOR REMARK 3 S11: 0.4146 S12: -0.5761 S13: 0.4784 REMARK 3 S21: 1.0637 S22: -0.4593 S23: 0.3116 REMARK 3 S31: -0.5537 S32: -0.1964 S33: 0.0905 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7735 -28.4498 18.2031 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.1726 REMARK 3 T33: 0.2500 T12: -0.0202 REMARK 3 T13: 0.0425 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 7.7669 L22: 2.9165 REMARK 3 L33: 4.1722 L12: -0.7951 REMARK 3 L13: -1.5889 L23: 0.1512 REMARK 3 S TENSOR REMARK 3 S11: 0.2475 S12: -0.1487 S13: 0.8113 REMARK 3 S21: 0.1996 S22: -0.1888 S23: 0.0735 REMARK 3 S31: -0.3919 S32: -0.2630 S33: -0.0093 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.0678 -34.8650 5.7416 REMARK 3 T TENSOR REMARK 3 T11: 0.1667 T22: 0.1746 REMARK 3 T33: 0.1229 T12: -0.0126 REMARK 3 T13: 0.0053 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.4778 L22: 4.5351 REMARK 3 L33: 1.4479 L12: -0.6938 REMARK 3 L13: -0.3464 L23: -0.5913 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: 0.1020 S13: 0.0088 REMARK 3 S21: -0.0733 S22: 0.0090 S23: -0.0023 REMARK 3 S31: 0.0091 S32: -0.0402 S33: -0.0240 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6239 -41.0403 11.1859 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.1771 REMARK 3 T33: 0.1505 T12: -0.0237 REMARK 3 T13: 0.0013 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 4.2106 L22: 5.3231 REMARK 3 L33: 2.2004 L12: 3.6521 REMARK 3 L13: 1.3731 L23: 2.1811 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: -0.1444 S13: -0.1765 REMARK 3 S21: 0.0183 S22: -0.1528 S23: -0.0725 REMARK 3 S31: 0.0587 S32: -0.2300 S33: 0.0470 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2494 -41.8382 18.0846 REMARK 3 T TENSOR REMARK 3 T11: 0.1589 T22: 0.2205 REMARK 3 T33: 0.1628 T12: -0.0614 REMARK 3 T13: 0.0284 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 4.2141 L22: 2.6318 REMARK 3 L33: 1.9874 L12: 0.9846 REMARK 3 L13: 0.4073 L23: 0.8568 REMARK 3 S TENSOR REMARK 3 S11: 0.1504 S12: -0.2536 S13: -0.0951 REMARK 3 S21: 0.2092 S22: -0.1901 S23: 0.1332 REMARK 3 S31: 0.1073 S32: -0.2443 S33: 0.0246 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3085 -33.4115 15.6699 REMARK 3 T TENSOR REMARK 3 T11: 0.3172 T22: 0.5042 REMARK 3 T33: 0.5132 T12: -0.0129 REMARK 3 T13: 0.0317 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.9879 L22: 3.9904 REMARK 3 L33: 2.8356 L12: -3.4120 REMARK 3 L13: 2.8967 L23: -3.3423 REMARK 3 S TENSOR REMARK 3 S11: 0.4001 S12: -0.3598 S13: 0.2682 REMARK 3 S21: 0.0466 S22: 0.0776 S23: 1.6186 REMARK 3 S31: 0.2276 S32: -1.4543 S33: -0.5626 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74399 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 36.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.12920 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 3.30500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6WEY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% ASO4 0.4% BME 50 MM MES PH 6.0 200 REMARK 280 MM IMIDAZOLE /MALATE PH 8.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 13.12333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.24667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.24667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 13.12333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 421 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 467 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 PHE A 168 REMARK 465 LEU A 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 59 -3.12 80.56 REMARK 500 HIS A 86 -130.44 55.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XB1 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KG3 RELATED DB: PDB REMARK 900 7KG3 CONTAINS THE SAME PROTEIN COMPLEXED WITH MES. REMARK 900 RELATED ID: 7KG1 RELATED DB: PDB REMARK 900 7KG1 SHARES THE SAME CITATION. REMARK 900 RELATED ID: 7KG8 RELATED DB: PDB REMARK 900 7KG8 SHARES THE SAME CITATION. REMARK 900 RELATED ID: 7KFP RELATED DB: PDB REMARK 900 7KFP SHARES THE SAME CITATION. REMARK 900 RELATED ID: 7KG0 RELATED DB: PDB REMARK 900 7KG0 SHARES THE SAME CITATION. REMARK 900 RELATED ID: 7KG7 RELATED DB: PDB REMARK 900 7KG7 SHARES THE SAME CITATION. REMARK 900 RELATED ID: 7KG6 RELATED DB: PDB REMARK 900 7KG6 SHARES THE SAME CITATION. DBREF 7KXB A 3 169 UNP P0DTD1 R1AB_SARS2 1025 1191 SEQADV 7KXB GLY A 1 UNP P0DTD1 EXPRESSION TAG SEQADV 7KXB PRO A 2 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 169 GLY PRO VAL ASN SER PHE SER GLY TYR LEU LYS LEU THR SEQRES 2 A 169 ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU GLU SEQRES 3 A 169 ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA ALA SEQRES 4 A 169 ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY ALA SEQRES 5 A 169 LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SER SEQRES 6 A 169 ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL GLY SEQRES 7 A 169 GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS HIS SEQRES 8 A 169 CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY GLU SEQRES 9 A 169 ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE ASN SEQRES 10 A 169 GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA GLY SEQRES 11 A 169 ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL CYS SEQRES 12 A 169 VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL PHE SEQRES 13 A 169 ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE LEU HET XB1 A 201 29 HET BME A 202 4 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HETNAM XB1 N-{3-[(1,3-DIMETHYL-2,6-DIOXO-2,3,6,9-TETRAHYDRO-1H- HETNAM 2 XB1 PURIN-8-YL)SULFANYL]PROPYL}-N'-[2-(MORPHOLIN-4-YL) HETNAM 3 XB1 ETHYL]THIOUREA HETNAM BME BETA-MERCAPTOETHANOL HETNAM SO4 SULFATE ION FORMUL 2 XB1 C17 H27 N7 O3 S2 FORMUL 3 BME C2 H6 O S FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *181(H2 O) HELIX 1 AA1 ASP A 22 LYS A 31 1 10 HELIX 2 AA2 GLY A 47 THR A 57 1 11 HELIX 3 AA3 ASN A 59 GLY A 73 1 15 HELIX 4 AA4 ASN A 99 GLY A 103 5 5 HELIX 5 AA5 GLN A 107 ASN A 115 1 9 HELIX 6 AA6 PHE A 116 HIS A 119 5 4 HELIX 7 AA7 ASP A 135 VAL A 147 1 13 HELIX 8 AA8 ASP A 157 SER A 167 1 11 SHEET 1 AA1 4 LEU A 10 LYS A 11 0 SHEET 2 AA1 4 VAL A 16 ASN A 20 -1 O ILE A 18 N LEU A 10 SHEET 3 AA1 4 ASN A 150 VAL A 155 1 O LEU A 153 N TYR A 17 SHEET 4 AA1 4 VAL A 121 ALA A 124 1 N ALA A 124 O TYR A 152 SHEET 1 AA2 3 VAL A 34 ALA A 38 0 SHEET 2 AA2 3 HIS A 91 VAL A 95 1 O VAL A 95 N ASN A 37 SHEET 3 AA2 3 SER A 80 SER A 84 -1 N LEU A 83 O CYS A 92 SITE 1 AC1 21 ASP A 22 ILE A 23 ALA A 38 ASN A 40 SITE 2 AC1 21 LYS A 44 GLY A 46 GLY A 47 GLY A 48 SITE 3 AC1 21 VAL A 49 LEU A 126 SER A 128 ALA A 129 SITE 4 AC1 21 GLY A 130 PHE A 132 ALA A 154 PHE A 156 SITE 5 AC1 21 HOH A 309 HOH A 316 HOH A 333 HOH A 338 SITE 6 AC1 21 HOH A 396 SITE 1 AC2 4 ASN A 58 ASN A 59 TYR A 68 ASN A 72 SITE 1 AC3 2 SER A 7 GLY A 8 SITE 1 AC4 3 SER A 7 LYS A 19 LYS A 29 SITE 1 AC5 3 GLY A 47 GLY A 48 HOH A 303 CRYST1 113.636 113.636 39.370 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008800 0.005081 0.000000 0.00000 SCALE2 0.000000 0.010161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025400 0.00000