HEADER TRANSPORT PROTEIN/IMMUNE SYSTEM 08-DEC-20 7KYO TITLE PSABC FROM STREPTOCOCCUS PNEUMONIAE IN COMPLEX WITH FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANGANESE ABC TRANSPORTER, ATP-BINDING PROTEIN; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: PSAB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: FAB LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: MANGANESE ABC TRANSPORTER, PERMEASE PROTEIN; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: PSAC; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE SEROTYPE 2 (STRAIN D39 SOURCE 3 / NCTC 7466); SOURCE 4 ORGANISM_TAXID: 373153; SOURCE 5 STRAIN: D39 / NCTC 7466; SOURCE 6 GENE: PSAB, SPD_1461; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: MOUSE; SOURCE 19 ORGANISM_TAXID: 10090; SOURCE 20 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 23 MOL_ID: 4; SOURCE 24 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE SEROTYPE 2 (STRAIN D39 SOURCE 25 / NCTC 7466); SOURCE 26 ORGANISM_TAXID: 373153; SOURCE 27 STRAIN: D39 / NCTC 7466; SOURCE 28 GENE: PSAC, SPD_1462; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ABC TRANSPORTER MANGANESE, TRANSPORT PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.MAHER,J.SJOHAMN REVDAT 2 18-OCT-23 7KYO 1 REMARK REVDAT 1 25-AUG-21 7KYO 0 JRNL AUTH S.L.NEVILLE,J.SJOHAMN,J.A.WATTS,H.MACDERMOTT-OPESKIN, JRNL AUTH 2 S.J.FAIRWEATHER,K.GANIO,A.CAREY HULYER,A.P.MCGRATH, JRNL AUTH 3 A.J.HAYES,T.R.MALCOLM,M.R.DAVIES,N.NOMURA,S.IWATA, JRNL AUTH 4 M.L.O'MARA,M.J.MAHER,C.A.MCDEVITT JRNL TITL THE STRUCTURAL BASIS OF BACTERIAL MANGANESE IMPORT. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34362732 JRNL DOI 10.1126/SCIADV.ABG3980 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 30603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1689 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 870 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 35.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.52000 REMARK 3 B22 (A**2) : 1.47000 REMARK 3 B33 (A**2) : 1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.389 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.324 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.200 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.892 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7169 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6835 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9753 ; 1.014 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15730 ; 0.837 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 922 ; 5.430 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 262 ;34.171 ;24.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1161 ;12.447 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.300 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1155 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8019 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1583 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3697 ; 0.381 ; 3.908 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3696 ; 0.381 ; 3.907 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4613 ; 0.709 ; 5.860 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4614 ; 0.709 ; 5.861 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3470 ; 0.244 ; 3.876 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3468 ; 0.244 ; 3.875 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5138 ; 0.471 ; 5.818 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7650 ; 1.737 ;30.748 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7651 ; 1.737 ;30.752 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7KYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34896 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2NQ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL, PH 8.5, 28% V/V REMARK 280 PEG400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.16500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.16500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 63.33000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 120.85000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 63.33000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 120.85000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.16500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 63.33000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 120.85000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.16500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 63.33000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 120.85000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 72330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -159.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, L, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 98.33000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE B 235 REMARK 465 ASN B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 LEU B 240 REMARK 465 CYS H 136 REMARK 465 GLY H 137 REMARK 465 ASP H 138 REMARK 465 THR H 139 REMARK 465 THR H 140 REMARK 465 GLY H 141 REMARK 465 THR H 224 REMARK 465 ILE H 225 REMARK 465 LYS H 226 REMARK 465 PRO H 227 REMARK 465 CYS H 228 REMARK 465 PRO H 229 REMARK 465 PRO H 230 REMARK 465 CYS H 231 REMARK 465 LYS H 232 REMARK 465 CYS H 233 REMARK 465 PRO H 234 REMARK 465 GLU L 217 REMARK 465 CYS L 218 REMARK 465 MET C 1 REMARK 465 ILE C 2 REMARK 465 ALA C 3 REMARK 465 GLU C 4 REMARK 465 PHE C 5 REMARK 465 ILE C 6 REMARK 465 ASP C 7 REMARK 465 GLY C 8 REMARK 465 LEU C 9 REMARK 465 GLN C 10 REMARK 465 LYS C 11 REMARK 465 PHE C 12 REMARK 465 ARG C 271 REMARK 465 TYR C 272 REMARK 465 LEU C 273 REMARK 465 LYS C 274 REMARK 465 LEU C 275 REMARK 465 LYS C 276 REMARK 465 ASN C 277 REMARK 465 LYS C 278 REMARK 465 HIS C 279 REMARK 465 LEU C 280 REMARK 465 LEU C 281 REMARK 465 LYS C 282 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 470 ARG H 44 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 123 CG CD CE NZ REMARK 470 LYS H 213 CG CD CE NZ REMARK 470 LYS L 24 CG CD CE NZ REMARK 470 GLU L 85 CG CD OE1 OE2 REMARK 470 LYS L 146 CG CD CE NZ REMARK 470 GLN L 160 CG CD OE1 NE2 REMARK 470 LYS L 173 CG CD CE NZ REMARK 470 PHE C 14 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 16 CG CD OE1 NE2 REMARK 470 LEU C 19 CG CD1 CD2 REMARK 470 LYS C 220 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 11 -74.54 -146.58 REMARK 500 LYS B 12 64.85 -119.80 REMARK 500 GLN B 133 43.79 -88.57 REMARK 500 ASP B 192 -153.26 -153.38 REMARK 500 ARG B 208 -54.25 -150.27 REMARK 500 LEU B 233 35.14 -141.53 REMARK 500 PRO H 134 -173.60 -67.63 REMARK 500 TRP H 196 125.16 68.52 REMARK 500 ALA L 54 -141.85 55.05 REMARK 500 ASN L 142 74.73 57.72 REMARK 500 ASN L 194 -68.24 -90.71 REMARK 500 ASN C 127 60.48 -156.05 REMARK 500 PHE C 153 33.78 -97.49 REMARK 500 ASN C 245 67.95 62.47 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7KYO B 1 240 UNP A0A0H2ZNF3_STRP2 DBREF2 7KYO B A0A0H2ZNF3 1 240 DBREF 7KYO H 1 234 PDB 7KYO 7KYO 1 234 DBREF 7KYO L 1 218 PDB 7KYO 7KYO 1 218 DBREF1 7KYO C 1 282 UNP A0A0H2ZPI2_STRP2 DBREF2 7KYO C A0A0H2ZPI2 1 282 SEQADV 7KYO SER C 100 UNP A0A0H2ZPI PHE 100 CONFLICT SEQRES 1 B 240 MET ILE ARG ILE GLU ASN LEU SER VAL SER TYR LYS GLU SEQRES 2 B 240 THR LEU ALA LEU LYS ASP ILE SER LEU VAL LEU HIS GLY SEQRES 3 B 240 PRO THR ILE THR GLY ILE ILE GLY PRO ASN GLY ALA GLY SEQRES 4 B 240 LYS SER THR LEU LEU LYS GLY MET LEU GLY ILE ILE PRO SEQRES 5 B 240 HIS GLN GLY GLN ALA PHE LEU ASP ASP LYS GLU VAL LYS SEQRES 6 B 240 LYS SER LEU HIS ARG ILE ALA TYR VAL GLU GLN LYS ILE SEQRES 7 B 240 ASN ILE ASP TYR ASN PHE PRO ILE LYS VAL LYS GLU CYS SEQRES 8 B 240 VAL SER LEU GLY LEU PHE PRO SER ILE PRO LEU PHE ARG SEQRES 9 B 240 SER LEU LYS ALA LYS HIS TRP LYS LYS VAL GLN GLU ALA SEQRES 10 B 240 LEU GLU ILE VAL GLY LEU ALA ASP TYR ALA GLU ARG GLN SEQRES 11 B 240 ILE SER GLN LEU SER GLY GLY GLN PHE GLN ARG VAL LEU SEQRES 12 B 240 ILE ALA ARG CYS LEU VAL GLN GLU ALA ASP TYR ILE LEU SEQRES 13 B 240 LEU ASP GLU PRO PHE ALA GLY ILE ASP SER VAL SER GLU SEQRES 14 B 240 GLU ILE ILE MET ASN THR LEU ARG ASP LEU LYS LYS ALA SEQRES 15 B 240 GLY LYS THR VAL LEU ILE VAL HIS HIS ASP LEU SER LYS SEQRES 16 B 240 ILE PRO HIS TYR PHE ASP GLN VAL LEU LEU VAL ASN ARG SEQRES 17 B 240 GLU VAL ILE ALA PHE GLY PRO THR LYS GLU THR PHE THR SEQRES 18 B 240 GLU THR ASN LEU LYS GLU ALA TYR GLY ASN GLN LEU PHE SEQRES 19 B 240 PHE ASN GLY GLY ASP LEU SEQRES 1 H 234 GLU VAL MET LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 234 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 234 ILE THR PHE SER SER TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 H 234 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 H 234 SER GLY GLY SER THR TYR TYR PRO ASP SER VAL LYS GLY SEQRES 6 H 234 ARG PHE THR ILE SER ARG ASP ASN ALA ARG ASN ILE LEU SEQRES 7 H 234 TYR LEU GLN MET SER SER LEU ARG SER GLU ASP THR ALA SEQRES 8 H 234 MET TYR TYR CYS ALA ARG GLY PRO MET ALA LEU LEU TYR SEQRES 9 H 234 TYR ARG GLY PHE ASP TYR TRP GLY GLN GLY THR THR LEU SEQRES 10 H 234 THR VAL SER SER ALA LYS THR THR ALA PRO SER VAL TYR SEQRES 11 H 234 PRO LEU ALA PRO VAL CYS GLY ASP THR THR GLY SER SER SEQRES 12 H 234 VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SEQRES 13 H 234 PRO VAL THR LEU THR TRP ASN SER GLY SER LEU SER SER SEQRES 14 H 234 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU SEQRES 15 H 234 TYR THR LEU SER SER SER VAL THR VAL THR SER SER THR SEQRES 16 H 234 TRP PRO SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO SEQRES 17 H 234 ALA SER SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG SEQRES 18 H 234 GLY PRO THR ILE LYS PRO CYS PRO PRO CYS LYS CYS PRO SEQRES 1 L 218 ASP ILE VAL MET THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 L 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS LYS ALA SER SEQRES 3 L 218 GLN SER VAL ASP TYR ASP GLY ASP SER TYR MET ASN TRP SEQRES 4 L 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO GLN LEU LEU ILE SEQRES 5 L 218 TYR ALA ALA SER ASN LEU GLU SER GLY ILE PRO ALA ARG SEQRES 6 L 218 PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU ASN SEQRES 7 L 218 ILE HIS PRO VAL GLU GLU GLU ASP ALA ALA THR TYR TYR SEQRES 8 L 218 CYS GLN GLN SER ASN GLU ASP PRO TRP THR PHE GLY GLY SEQRES 9 L 218 GLY THR ASN LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASN SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 L 218 ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 C 282 MET ILE ALA GLU PHE ILE ASP GLY LEU GLN LYS PHE HIS SEQRES 2 C 282 PHE LEU GLN ASN ALA LEU ILE THR ALA ILE VAL VAL GLY SEQRES 3 C 282 ILE VAL ALA GLY ALA VAL GLY CYS PHE ILE ILE LEU ARG SEQRES 4 C 282 GLY MET SER LEU MET GLY ASP ALA ILE SER HIS ALA VAL SEQRES 5 C 282 LEU PRO GLY VAL ALA LEU SER PHE ILE LEU GLY LEU ASP SEQRES 6 C 282 PHE PHE ILE GLY ALA ILE VAL PHE GLY LEU LEU ALA ALA SEQRES 7 C 282 ILE ILE ILE THR TYR ILE LYS GLY ASN SER ILE ILE LYS SEQRES 8 C 282 SER ASP THR ALA ILE GLY ILE THR SER SER SER PHE LEU SEQRES 9 C 282 ALA LEU GLY ILE ILE LEU ILE GLY VAL ALA LYS SER SER SEQRES 10 C 282 THR ASP LEU PHE HIS ILE LEU PHE GLY ASN ILE LEU ALA SEQRES 11 C 282 VAL GLN ASP THR ASP MET PHE ILE THR MET GLY VAL GLY SEQRES 12 C 282 ALA ALA ILE LEU LEU LEU ILE TRP ILE PHE PHE LYS GLN SEQRES 13 C 282 LEU LEU ILE THR SER PHE ASP GLU LEU LEU ALA LYS ALA SEQRES 14 C 282 MET GLY MET PRO VAL ASN PHE TYR HIS TYR LEU LEU MET SEQRES 15 C 282 VAL LEU LEU THR LEU VAL SER VAL THR ALA MET GLN SER SEQRES 16 C 282 VAL GLY THR ILE LEU ILE VAL ALA MET LEU ILE THR PRO SEQRES 17 C 282 ALA ALA THR ALA TYR LEU TYR ALA ASN SER LEU LYS SER SEQRES 18 C 282 MET ILE PHE LEU SER SER THR PHE GLY ALA THR ALA SER SEQRES 19 C 282 VAL LEU GLY LEU PHE ILE GLY TYR SER PHE ASN VAL ALA SEQRES 20 C 282 ALA GLY SER SER ILE VAL LEU THR ALA ALA SER PHE PHE SEQRES 21 C 282 LEU ILE SER PHE PHE ILE ALA PRO LYS GLN ARG TYR LEU SEQRES 22 C 282 LYS LEU LYS ASN LYS HIS LEU LEU LYS FORMUL 5 HOH *33(H2 O) HELIX 1 AA1 GLY B 39 LEU B 48 1 10 HELIX 2 AA2 GLU B 63 HIS B 69 5 7 HELIX 3 AA3 GLN B 76 ILE B 80 5 5 HELIX 4 AA4 LYS B 87 LEU B 94 1 8 HELIX 5 AA5 GLY B 95 PHE B 97 5 3 HELIX 6 AA6 LYS B 107 GLY B 122 1 16 HELIX 7 AA7 GLN B 130 LEU B 134 5 5 HELIX 8 AA8 SER B 135 VAL B 149 1 15 HELIX 9 AA9 ASP B 165 ALA B 182 1 18 HELIX 10 AB1 LYS B 195 PHE B 200 1 6 HELIX 11 AB2 THR B 216 PHE B 220 1 5 HELIX 12 AB3 THR B 221 GLY B 230 1 10 HELIX 13 AB4 THR H 28 TYR H 32 5 5 HELIX 14 AB5 ARG H 86 THR H 90 5 5 HELIX 15 AB6 LEU H 102 ARG H 106 5 5 HELIX 16 AB7 GLU L 83 ALA L 87 5 5 HELIX 17 AB8 SER L 125 SER L 131 1 7 HELIX 18 AB9 THR L 186 HIS L 193 1 8 HELIX 19 AC1 PHE C 14 GLY C 40 1 27 HELIX 20 AC2 LEU C 43 LEU C 62 1 20 HELIX 21 AC3 ASP C 65 ASN C 87 1 23 HELIX 22 AC4 LYS C 91 LYS C 115 1 25 HELIX 23 AC5 SER C 116 PHE C 125 1 10 HELIX 24 AC6 GLN C 132 PHE C 153 1 22 HELIX 25 AC7 PHE C 153 ASP C 163 1 11 HELIX 26 AC8 ASP C 163 MET C 170 1 8 HELIX 27 AC9 PRO C 173 ALA C 192 1 20 HELIX 28 AD1 ALA C 192 GLY C 197 1 6 HELIX 29 AD2 LEU C 200 ALA C 216 1 17 HELIX 30 AD3 SER C 218 ASN C 245 1 28 HELIX 31 AD4 ALA C 247 ALA C 267 1 21 SHEET 1 AA1 3 LEU B 15 LEU B 24 0 SHEET 2 AA1 3 ILE B 2 SER B 10 -1 N ILE B 2 O LEU B 24 SHEET 3 AA1 3 GLN B 56 LEU B 59 -1 O GLN B 56 N GLU B 5 SHEET 1 AA2 6 ILE B 71 VAL B 74 0 SHEET 2 AA2 6 TYR B 154 ASP B 158 1 O LEU B 156 N VAL B 74 SHEET 3 AA2 6 THR B 185 VAL B 189 1 O VAL B 189 N LEU B 157 SHEET 4 AA2 6 THR B 28 ILE B 33 1 N ILE B 32 O ILE B 188 SHEET 5 AA2 6 GLN B 202 VAL B 206 1 O VAL B 206 N ILE B 33 SHEET 6 AA2 6 VAL B 210 PRO B 215 -1 O GLY B 214 N VAL B 203 SHEET 1 AA3 4 MET H 3 SER H 7 0 SHEET 2 AA3 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA3 4 ILE H 77 MET H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 AA3 4 THR H 68 ASP H 72 -1 N ASP H 72 O ILE H 77 SHEET 1 AA4 6 GLY H 10 VAL H 12 0 SHEET 2 AA4 6 THR H 115 VAL H 119 1 O THR H 118 N GLY H 10 SHEET 3 AA4 6 ALA H 91 ARG H 97 -1 N ALA H 91 O LEU H 117 SHEET 4 AA4 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA4 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA4 6 THR H 57 TYR H 58 -1 O TYR H 58 N SER H 50 SHEET 1 AA5 4 SER H 128 LEU H 132 0 SHEET 2 AA5 4 SER H 143 TYR H 153 -1 O LEU H 149 N TYR H 130 SHEET 3 AA5 4 TYR H 183 THR H 192 -1 O TYR H 183 N TYR H 153 SHEET 4 AA5 4 VAL H 171 LEU H 178 -1 N PHE H 174 O SER H 186 SHEET 1 AA6 3 THR H 159 TRP H 162 0 SHEET 2 AA6 3 THR H 202 HIS H 207 -1 O ASN H 204 N THR H 161 SHEET 3 AA6 3 THR H 212 LYS H 217 -1 O VAL H 214 N VAL H 205 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA7 4 ASP L 74 ILE L 79 -1 O ILE L 79 N ALA L 19 SHEET 4 AA7 4 PHE L 66 SER L 71 -1 N SER L 69 O THR L 76 SHEET 1 AA8 6 SER L 10 VAL L 13 0 SHEET 2 AA8 6 THR L 106 ILE L 110 1 O GLU L 109 N LEU L 11 SHEET 3 AA8 6 ALA L 88 GLN L 94 -1 N ALA L 88 O LEU L 108 SHEET 4 AA8 6 MET L 37 GLN L 42 -1 N ASN L 38 O GLN L 93 SHEET 5 AA8 6 GLN L 49 TYR L 53 -1 O ILE L 52 N TRP L 39 SHEET 6 AA8 6 ASN L 57 LEU L 58 -1 O ASN L 57 N TYR L 53 SHEET 1 AA9 4 SER L 10 VAL L 13 0 SHEET 2 AA9 4 THR L 106 ILE L 110 1 O GLU L 109 N LEU L 11 SHEET 3 AA9 4 ALA L 88 GLN L 94 -1 N ALA L 88 O LEU L 108 SHEET 4 AA9 4 THR L 101 PHE L 102 -1 O THR L 101 N GLN L 94 SHEET 1 AB1 4 THR L 118 PHE L 122 0 SHEET 2 AB1 4 ALA L 134 PHE L 143 -1 O VAL L 137 N PHE L 122 SHEET 3 AB1 4 TYR L 177 LEU L 185 -1 O TYR L 177 N PHE L 143 SHEET 4 AB1 4 VAL L 163 TRP L 167 -1 N SER L 166 O SER L 180 SHEET 1 AB2 4 SER L 157 GLU L 158 0 SHEET 2 AB2 4 ASN L 149 ILE L 154 -1 N ILE L 154 O SER L 157 SHEET 3 AB2 4 SER L 195 HIS L 202 -1 O GLU L 199 N LYS L 151 SHEET 4 AB2 4 SER L 205 ASN L 214 -1 O ILE L 209 N ALA L 200 SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.04 SSBOND 2 CYS H 148 CYS H 203 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 92 1555 1555 2.05 SSBOND 4 CYS L 138 CYS L 198 1555 1555 2.05 CISPEP 1 GLY B 26 PRO B 27 0 -2.07 CISPEP 2 PHE H 154 PRO H 155 0 -6.61 CISPEP 3 GLU H 156 PRO H 157 0 6.99 CISPEP 4 TRP H 196 PRO H 197 0 2.89 CISPEP 5 SER L 7 PRO L 8 0 -2.80 CISPEP 6 HIS L 80 PRO L 81 0 -1.83 CISPEP 7 ASP L 98 PRO L 99 0 -9.09 CISPEP 8 TYR L 144 PRO L 145 0 2.51 CRYST1 126.660 241.700 98.330 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007895 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010170 0.00000