data_7KZL # _entry.id 7KZL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7KZL pdb_00007kzl 10.2210/pdb7kzl/pdb WWPDB D_1000245291 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-12-23 2 'Structure model' 1 1 2021-01-20 3 'Structure model' 1 2 2021-02-03 4 'Structure model' 2 0 2023-11-15 5 'Structure model' 2 1 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' atom_site 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 8 4 'Structure model' pdbx_validate_main_chain_plane 9 4 'Structure model' pdbx_validate_peptide_omega 10 4 'Structure model' pdbx_validate_rmsd_angle 11 4 'Structure model' struct_conn 12 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 4 'Structure model' '_atom_site.auth_atom_id' 14 4 'Structure model' '_atom_site.label_atom_id' 15 4 'Structure model' '_database_2.pdbx_DOI' 16 4 'Structure model' '_database_2.pdbx_database_accession' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7KZL _pdbx_database_status.recvd_initial_deposition_date 2020-12-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Botos, I.' 1 ? 'Appella, D.H.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 49 _citation.language ? _citation.page_first 713 _citation.page_last 725 _citation.title 'Conformational constraints of cyclopentane peptide nucleic acids facilitate tunable binding to DNA.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaa1249 _citation.pdbx_database_id_PubMed 33406227 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zheng, H.' 1 ? primary 'Botos, I.' 2 ? primary 'Clausse, V.' 3 ? primary 'Nikolayevskiy, H.' 4 ? primary 'Rastede, E.E.' 5 ? primary 'Fouz, M.F.' 6 ? primary 'Mazur, S.J.' 7 ? primary 'Appella, D.H.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*AP*TP*CP*AP*CP*AP*TP*C)-3') ; 2674.787 1 ? ? ? ? 2 polymer syn XDJ-XDD-XDY-XDJ-XDY-XDJ-XDD-XDY-XDD-XDV 3021.119 1 ? ? ? ? 3 non-polymer syn 'IODIDE ION' 126.904 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 6 ? ? ? ? 5 non-polymer nat METHANOL 32.042 3 ? ? ? ? 6 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 7 water nat water 18.015 97 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DA)(DT)(DC)(DA)(DC)(DA)(DT)(DC)' TATCACATC A ? 2 'polypeptide(L)' no yes '(XDJ)(XDD)(XDY)(XDJ)(XDY)(XDJ)(XDD)(XDY)(XDD)(XDV)' XXXXXXXXXX B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'IODIDE ION' IOD 4 'ZINC ION' ZN 5 METHANOL MOH 6 1,2-ETHANEDIOL EDO 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DT n 1 4 DC n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DT n 1 9 DC n 2 1 XDJ n 2 2 XDD n 2 3 XDY n 2 4 XDJ n 2 5 XDY n 2 6 XDJ n 2 7 XDD n 2 8 XDY n 2 9 XDD n 2 10 XDV n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? '32630 ' ? 2 2 sample ? ? 'synthetic construct' ? '32630 ' ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 HOH non-polymer . WATER ? 'H2 O' 18.015 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 MOH non-polymer . METHANOL ? 'C H4 O' 32.042 XDD peptide-like . 'N-[(1S,2S)-2-aminocyclopentyl]-N-[(6-amino-9H-purin-9-yl)acetyl]glycine' ? 'C14 H19 N7 O3' 333.346 XDJ peptide-like . 'N-[(1S,2S)-2-aminocyclopentyl]-N-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)acetyl]glycine' ? 'C14 H19 N7 O4' 349.345 XDV non-polymer . '2-[2-(2-aminoethoxy)ethoxy]acetamide' ? 'C6 H14 N2 O3' 162.187 XDY peptide-like . 'N-[(1S,2S)-2-aminocyclopentyl]-N-[(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)acetyl]glycine' ? 'C14 H20 N4 O5' 324.332 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT Td A . n A 1 2 DA 2 2 2 DA Ad A . n A 1 3 DT 3 3 3 DT Td A . n A 1 4 DC 4 4 4 DC Cd A . n A 1 5 DA 5 5 5 DA Ad A . n A 1 6 DC 6 6 6 DC Cd A . n A 1 7 DA 7 7 7 DA Ad A . n A 1 8 DT 8 8 8 DT Td A . n A 1 9 DC 9 9 9 DC Cd A . n B 2 1 XDJ 1 1 1 XDJ GP9 B . n B 2 2 XDD 2 2 2 XDD AP9 B . n B 2 3 XDY 3 3 3 XDY TP9 B . n B 2 4 XDJ 4 4 4 XDJ GP9 B . n B 2 5 XDY 5 5 5 XDY TP9 B . n B 2 6 XDJ 6 6 6 XDJ GP9 B . n B 2 7 XDD 7 7 7 XDD AP9 B . n B 2 8 XDY 8 8 8 XDY TP9 B . n B 2 9 XDD 9 9 9 XDD AP9 B . n B 2 10 XDV 10 10 10 XDV MP9 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IOD 1 101 1 IOD IOD A . D 4 ZN 1 102 7 ZN ZN A . E 4 ZN 1 103 8 ZN ZN A . F 5 MOH 1 101 1 MOH MOH B . G 5 MOH 1 102 2 MOH MOH B . H 5 MOH 1 103 4 MOH MOH B . I 6 EDO 1 104 6 EDO EDO B . J 4 ZN 1 105 2 ZN ZN B . K 4 ZN 1 106 3 ZN ZN B . L 4 ZN 1 107 5 ZN ZN B . M 4 ZN 1 108 6 ZN ZN B . N 7 HOH 1 201 18 HOH HOH A . N 7 HOH 2 202 73 HOH HOH A . N 7 HOH 3 203 16 HOH HOH A . N 7 HOH 4 204 20 HOH HOH A . N 7 HOH 5 205 53 HOH HOH A . N 7 HOH 6 206 17 HOH HOH A . N 7 HOH 7 207 6 HOH HOH A . N 7 HOH 8 208 4 HOH HOH A . N 7 HOH 9 209 13 HOH HOH A . N 7 HOH 10 210 15 HOH HOH A . N 7 HOH 11 211 7 HOH HOH A . N 7 HOH 12 212 3 HOH HOH A . N 7 HOH 13 213 10 HOH HOH A . N 7 HOH 14 214 59 HOH HOH A . N 7 HOH 15 215 9 HOH HOH A . N 7 HOH 16 216 5 HOH HOH A . N 7 HOH 17 217 66 HOH HOH A . N 7 HOH 18 218 8 HOH HOH A . N 7 HOH 19 219 95 HOH HOH A . N 7 HOH 20 220 45 HOH HOH A . N 7 HOH 21 221 32 HOH HOH A . N 7 HOH 22 222 112 HOH HOH A . N 7 HOH 23 223 65 HOH HOH A . N 7 HOH 24 224 109 HOH HOH A . N 7 HOH 25 225 72 HOH HOH A . N 7 HOH 26 226 55 HOH HOH A . N 7 HOH 27 227 83 HOH HOH A . N 7 HOH 28 228 74 HOH HOH A . N 7 HOH 29 229 54 HOH HOH A . N 7 HOH 30 230 125 HOH HOH A . N 7 HOH 31 231 80 HOH HOH A . N 7 HOH 32 232 31 HOH HOH A . N 7 HOH 33 233 70 HOH HOH A . N 7 HOH 34 234 81 HOH HOH A . N 7 HOH 35 235 98 HOH HOH A . N 7 HOH 36 236 97 HOH HOH A . N 7 HOH 37 237 71 HOH HOH A . N 7 HOH 38 238 22 HOH HOH A . N 7 HOH 39 239 50 HOH HOH A . N 7 HOH 40 240 104 HOH HOH A . N 7 HOH 41 241 78 HOH HOH A . N 7 HOH 42 242 61 HOH HOH A . N 7 HOH 43 243 115 HOH HOH A . N 7 HOH 44 244 76 HOH HOH A . N 7 HOH 45 245 88 HOH HOH A . N 7 HOH 46 246 102 HOH HOH A . N 7 HOH 47 247 121 HOH HOH A . O 7 HOH 1 201 40 HOH HOH B . O 7 HOH 2 202 43 HOH HOH B . O 7 HOH 3 203 51 HOH HOH B . O 7 HOH 4 204 46 HOH HOH B . O 7 HOH 5 205 57 HOH HOH B . O 7 HOH 6 206 14 HOH HOH B . O 7 HOH 7 207 2 HOH HOH B . O 7 HOH 8 208 27 HOH HOH B . O 7 HOH 9 209 69 HOH HOH B . O 7 HOH 10 210 118 HOH HOH B . O 7 HOH 11 211 36 HOH HOH B . O 7 HOH 12 212 11 HOH HOH B . O 7 HOH 13 213 42 HOH HOH B . O 7 HOH 14 214 64 HOH HOH B . O 7 HOH 15 215 33 HOH HOH B . O 7 HOH 16 216 29 HOH HOH B . O 7 HOH 17 217 56 HOH HOH B . O 7 HOH 18 218 94 HOH HOH B . O 7 HOH 19 219 37 HOH HOH B . O 7 HOH 20 220 34 HOH HOH B . O 7 HOH 21 221 39 HOH HOH B . O 7 HOH 22 222 48 HOH HOH B . O 7 HOH 23 223 1 HOH HOH B . O 7 HOH 24 224 28 HOH HOH B . O 7 HOH 25 225 38 HOH HOH B . O 7 HOH 26 226 19 HOH HOH B . O 7 HOH 27 227 26 HOH HOH B . O 7 HOH 28 228 41 HOH HOH B . O 7 HOH 29 229 47 HOH HOH B . O 7 HOH 30 230 87 HOH HOH B . O 7 HOH 31 231 119 HOH HOH B . O 7 HOH 32 232 35 HOH HOH B . O 7 HOH 33 233 12 HOH HOH B . O 7 HOH 34 234 67 HOH HOH B . O 7 HOH 35 235 23 HOH HOH B . O 7 HOH 36 236 21 HOH HOH B . O 7 HOH 37 237 96 HOH HOH B . O 7 HOH 38 238 44 HOH HOH B . O 7 HOH 39 239 90 HOH HOH B . O 7 HOH 40 240 52 HOH HOH B . O 7 HOH 41 241 107 HOH HOH B . O 7 HOH 42 242 30 HOH HOH B . O 7 HOH 43 243 117 HOH HOH B . O 7 HOH 44 244 77 HOH HOH B . O 7 HOH 45 245 91 HOH HOH B . O 7 HOH 46 246 25 HOH HOH B . O 7 HOH 47 247 49 HOH HOH B . O 7 HOH 48 248 85 HOH HOH B . O 7 HOH 49 249 79 HOH HOH B . O 7 HOH 50 250 62 HOH HOH B . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id DT _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id C7 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id DT _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id C7 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7KZL _cell.details ? _cell.formula_units_Z ? _cell.length_a 54.704 _cell.length_a_esd ? _cell.length_b 54.704 _cell.length_b_esd ? _cell.length_c 39.633 _cell.length_c_esd ? _cell.volume 118602.847 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KZL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7KZL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.60 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100mM MES, 15% ethanol, 200mM Zinc acetate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300-HS' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-12-16 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 13.48 _reflns.entry_id 7KZL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.3 _reflns.d_resolution_low 32.09 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 28269 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 18.4 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 35.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.3 _reflns_shell.d_res_low 1.34 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 8.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2597 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.40 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.96 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 18.38 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7KZL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.30 _refine.ls_d_res_low 32.09 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 28269 _refine.ls_number_reflns_R_free 1420 _refine.ls_number_reflns_R_work 26849 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.66 _refine.ls_percent_reflns_R_free 5.02 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1728 _refine.ls_R_factor_R_free 0.1885 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1719 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model I-SAD _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 17.3569 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0955 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 32.09 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 508 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 411 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0245 ? 443 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.3581 ? 623 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0617 ? 53 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0193 ? 28 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 38.5684 ? 143 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.30 1.34 . . 164 2597 98.33 . . . 0.2106 . 0.1996 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.34 1.40 . . 134 2733 100.00 . . . 0.2353 . 0.1936 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.40 1.46 . . 161 2660 100.00 . . . 0.2264 . 0.1866 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.46 1.54 . . 134 2699 100.00 . . . 0.2096 . 0.1738 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.54 1.64 . . 120 2722 100.00 . . . 0.1852 . 0.1592 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.64 1.76 . . 124 2710 100.00 . . . 0.1554 . 0.1577 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.76 1.94 . . 151 2687 100.00 . . . 0.1984 . 0.1634 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.94 2.22 . . 142 2700 99.96 . . . 0.1922 . 0.1756 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.22 2.80 . . 167 2674 100.00 . . . 0.2285 . 0.1797 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.80 32.09 . . 123 2667 98.27 . . . 0.1530 . 0.1687 . . . . . . . . . . . # _struct.entry_id 7KZL _struct.title 'Cyclopentane peptide nucleic acid in complex with DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7KZL _struct_keywords.text 'peptide nucleic acid, PNA, PEPTIDE NUCLEIC ACID-DNA complex' _struct_keywords.pdbx_keywords 'PEPTIDE NUCLEIC ACID/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 7 ? O N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7KZL 7KZL ? 1 ? 1 2 PDB 7KZL 7KZL ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7KZL A 1 ? 9 ? 7KZL 1 ? 9 ? 1 9 2 2 7KZL B 1 ? 10 ? 7KZL 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B XDJ 1 C ? ? ? 1_555 B XDD 2 N ? ? B XDJ 1 B XDD 2 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale2 covale both ? B XDD 2 C ? ? ? 1_555 B XDY 3 N ? ? B XDD 2 B XDY 3 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale3 covale both ? B XDY 3 C ? ? ? 1_555 B XDJ 4 N ? ? B XDY 3 B XDJ 4 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale4 covale both ? B XDJ 4 C ? ? ? 1_555 B XDY 5 N ? ? B XDJ 4 B XDY 5 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale5 covale both ? B XDY 5 C ? ? ? 1_555 B XDJ 6 N ? ? B XDY 5 B XDJ 6 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale6 covale both ? B XDJ 6 C ? ? ? 1_555 B XDD 7 N ? ? B XDJ 6 B XDD 7 1_555 ? ? ? ? ? ? ? 1.409 ? ? covale7 covale both ? B XDD 7 C ? ? ? 1_555 B XDY 8 N ? ? B XDD 7 B XDY 8 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale8 covale both ? B XDY 8 C ? ? ? 1_555 B XDD 9 N ? ? B XDY 8 B XDD 9 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale9 covale both ? B XDD 9 C ? ? ? 1_555 B XDV 10 N01 ? ? B XDD 9 B XDV 10 1_555 ? ? ? ? ? ? ? 1.428 ? ? metalc1 metalc ? ? A DA 5 N7 ? ? ? 1_555 D ZN . ZN ? ? A DA 5 A ZN 102 1_555 ? ? ? ? ? ? ? 2.318 ? ? metalc2 metalc ? ? A DC 6 OP1 ? ? ? 1_555 J ZN . ZN ? ? A DC 6 B ZN 105 4_445 ? ? ? ? ? ? ? 1.967 ? ? metalc3 metalc ? ? D ZN . ZN ? ? ? 1_555 N HOH . O ? ? A ZN 102 A HOH 228 1_555 ? ? ? ? ? ? ? 1.921 ? ? metalc4 metalc ? ? D ZN . ZN ? ? ? 1_555 N HOH . O ? ? A ZN 102 A HOH 232 1_555 ? ? ? ? ? ? ? 2.147 ? ? metalc5 metalc ? ? E ZN . ZN ? ? ? 1_555 N HOH . O ? ? A ZN 103 A HOH 238 1_555 ? ? ? ? ? ? ? 2.209 ? ? metalc6 metalc ? ? E ZN . ZN ? ? ? 1_555 O HOH . O ? ? A ZN 103 B HOH 235 4_444 ? ? ? ? ? ? ? 2.579 ? ? metalc7 metalc ? ? E ZN . ZN ? ? ? 1_555 O HOH . O ? ? A ZN 103 B HOH 238 4_444 ? ? ? ? ? ? ? 2.296 ? ? metalc8 metalc ? ? N HOH . O ? ? ? 5_354 M ZN . ZN ? ? A HOH 223 B ZN 108 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc9 metalc ? ? N HOH . O ? ? ? 3_454 J ZN . ZN ? ? A HOH 234 B ZN 105 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc10 metalc ? ? B XDJ 1 N15 ? ? ? 1_555 K ZN . ZN ? ? B XDJ 1 B ZN 106 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc11 metalc ? ? B XDJ 1 N15 ? ? ? 1_555 M ZN . ZN ? ? B XDJ 1 B ZN 108 1_555 ? ? ? ? ? ? ? 2.264 ? ? metalc12 metalc ? ? B XDJ 6 N15 ? ? ? 1_555 J ZN . ZN ? ? B XDJ 6 B ZN 105 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc13 metalc ? ? F MOH . O ? ? ? 1_555 L ZN . ZN ? ? B MOH 101 B ZN 107 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc14 metalc ? ? G MOH . O ? ? ? 1_555 L ZN . ZN ? ? B MOH 102 B ZN 107 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc15 metalc ? ? H MOH . O ? ? ? 1_555 L ZN . ZN ? ? B MOH 103 B ZN 107 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc16 metalc ? ? I EDO . O2 ? ? ? 1_555 L ZN . ZN ? ? B EDO 104 B ZN 107 1_555 ? ? ? ? ? ? ? 2.156 ? ? metalc17 metalc ? ? J ZN . ZN ? ? ? 1_555 O HOH . O ? ? B ZN 105 B HOH 211 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc18 metalc ? ? K ZN . ZN ? ? ? 1_555 O HOH . O ? ? B ZN 106 B HOH 202 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc19 metalc ? ? K ZN . ZN ? ? ? 1_555 O HOH . O ? ? B ZN 106 B HOH 204 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc20 metalc ? ? K ZN . ZN ? ? ? 1_555 O HOH . O ? ? B ZN 106 B HOH 229 1_555 ? ? ? ? ? ? ? 1.963 ? ? metalc21 metalc ? ? K ZN . ZN ? ? ? 1_555 O HOH . O ? ? B ZN 106 B HOH 247 1_555 ? ? ? ? ? ? ? 2.072 ? ? metalc22 metalc ? ? M ZN . ZN ? ? ? 1_555 O HOH . O ? ? B ZN 108 B HOH 202 1_555 ? ? ? ? ? ? ? 1.920 ? ? metalc23 metalc ? ? M ZN . ZN ? ? ? 1_555 O HOH . O ? ? B ZN 108 B HOH 247 1_555 ? ? ? ? ? ? ? 2.400 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DA 5 ? A DA 5 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O ? N HOH . ? A HOH 228 ? 1_555 94.4 ? 2 N7 ? A DA 5 ? A DA 5 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O ? N HOH . ? A HOH 232 ? 1_555 113.4 ? 3 O ? N HOH . ? A HOH 228 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O ? N HOH . ? A HOH 232 ? 1_555 109.3 ? 4 OP1 ? A DC 6 ? A DC 6 ? 1_555 ZN ? J ZN . ? B ZN 105 ? 4_445 O ? N HOH . ? A HOH 234 ? 3_454 46.9 ? 5 OP1 ? A DC 6 ? A DC 6 ? 1_555 ZN ? J ZN . ? B ZN 105 ? 4_445 N15 ? B XDJ 6 ? B XDJ 6 ? 1_555 42.5 ? 6 O ? N HOH . ? A HOH 234 ? 3_454 ZN ? J ZN . ? B ZN 105 ? 4_445 N15 ? B XDJ 6 ? B XDJ 6 ? 1_555 9.6 ? 7 OP1 ? A DC 6 ? A DC 6 ? 1_555 ZN ? J ZN . ? B ZN 105 ? 4_445 O ? O HOH . ? B HOH 211 ? 1_555 49.3 ? 8 O ? N HOH . ? A HOH 234 ? 3_454 ZN ? J ZN . ? B ZN 105 ? 4_445 O ? O HOH . ? B HOH 211 ? 1_555 10.9 ? 9 N15 ? B XDJ 6 ? B XDJ 6 ? 1_555 ZN ? J ZN . ? B ZN 105 ? 4_445 O ? O HOH . ? B HOH 211 ? 1_555 6.9 ? 10 O ? N HOH . ? A HOH 238 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? B HOH 235 ? 4_444 99.9 ? 11 O ? N HOH . ? A HOH 238 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? B HOH 238 ? 4_444 132.8 ? 12 O ? O HOH . ? B HOH 235 ? 4_444 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? B HOH 238 ? 4_444 105.3 ? 13 O ? N HOH . ? A HOH 223 ? 5_354 ZN ? M ZN . ? B ZN 108 ? 1_555 N15 ? B XDJ 1 ? B XDJ 1 ? 1_555 99.1 ? 14 O ? N HOH . ? A HOH 223 ? 5_354 ZN ? M ZN . ? B ZN 108 ? 1_555 O ? O HOH . ? B HOH 202 ? 1_555 82.6 ? 15 N15 ? B XDJ 1 ? B XDJ 1 ? 1_555 ZN ? M ZN . ? B ZN 108 ? 1_555 O ? O HOH . ? B HOH 202 ? 1_555 93.7 ? 16 O ? N HOH . ? A HOH 223 ? 5_354 ZN ? M ZN . ? B ZN 108 ? 1_555 O ? O HOH . ? B HOH 247 ? 1_555 130.0 ? 17 N15 ? B XDJ 1 ? B XDJ 1 ? 1_555 ZN ? M ZN . ? B ZN 108 ? 1_555 O ? O HOH . ? B HOH 247 ? 1_555 127.9 ? 18 O ? O HOH . ? B HOH 202 ? 1_555 ZN ? M ZN . ? B ZN 108 ? 1_555 O ? O HOH . ? B HOH 247 ? 1_555 78.8 ? 19 N15 ? B XDJ 1 ? B XDJ 1 ? 1_555 ZN ? K ZN . ? B ZN 106 ? 1_555 O ? O HOH . ? B HOH 202 ? 1_555 93.7 ? 20 N15 ? B XDJ 1 ? B XDJ 1 ? 1_555 ZN ? K ZN . ? B ZN 106 ? 1_555 O ? O HOH . ? B HOH 204 ? 1_555 93.4 ? 21 O ? O HOH . ? B HOH 202 ? 1_555 ZN ? K ZN . ? B ZN 106 ? 1_555 O ? O HOH . ? B HOH 204 ? 1_555 80.8 ? 22 N15 ? B XDJ 1 ? B XDJ 1 ? 1_555 ZN ? K ZN . ? B ZN 106 ? 1_555 O ? O HOH . ? B HOH 229 ? 1_555 96.7 ? 23 O ? O HOH . ? B HOH 202 ? 1_555 ZN ? K ZN . ? B ZN 106 ? 1_555 O ? O HOH . ? B HOH 229 ? 1_555 168.1 ? 24 O ? O HOH . ? B HOH 204 ? 1_555 ZN ? K ZN . ? B ZN 106 ? 1_555 O ? O HOH . ? B HOH 229 ? 1_555 92.8 ? 25 N15 ? B XDJ 1 ? B XDJ 1 ? 1_555 ZN ? K ZN . ? B ZN 106 ? 1_555 O ? O HOH . ? B HOH 247 ? 1_555 173.0 ? 26 O ? O HOH . ? B HOH 202 ? 1_555 ZN ? K ZN . ? B ZN 106 ? 1_555 O ? O HOH . ? B HOH 247 ? 1_555 83.8 ? 27 O ? O HOH . ? B HOH 204 ? 1_555 ZN ? K ZN . ? B ZN 106 ? 1_555 O ? O HOH . ? B HOH 247 ? 1_555 92.7 ? 28 O ? O HOH . ? B HOH 229 ? 1_555 ZN ? K ZN . ? B ZN 106 ? 1_555 O ? O HOH . ? B HOH 247 ? 1_555 86.5 ? 29 O ? F MOH . ? B MOH 101 ? 1_555 ZN ? L ZN . ? B ZN 107 ? 1_555 O ? G MOH . ? B MOH 102 ? 1_555 99.2 ? 30 O ? F MOH . ? B MOH 101 ? 1_555 ZN ? L ZN . ? B ZN 107 ? 1_555 O ? H MOH . ? B MOH 103 ? 1_555 111.1 ? 31 O ? G MOH . ? B MOH 102 ? 1_555 ZN ? L ZN . ? B ZN 107 ? 1_555 O ? H MOH . ? B MOH 103 ? 1_555 113.3 ? 32 O ? F MOH . ? B MOH 101 ? 1_555 ZN ? L ZN . ? B ZN 107 ? 1_555 O2 ? I EDO . ? B EDO 104 ? 1_555 79.7 ? 33 O ? G MOH . ? B MOH 102 ? 1_555 ZN ? L ZN . ? B ZN 107 ? 1_555 O2 ? I EDO . ? B EDO 104 ? 1_555 129.4 ? 34 O ? H MOH . ? B MOH 103 ? 1_555 ZN ? L ZN . ? B ZN 107 ? 1_555 O2 ? I EDO . ? B EDO 104 ? 1_555 113.9 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C6 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N1 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.311 _pdbx_validate_rmsd_bond.bond_target_value 1.378 _pdbx_validate_rmsd_bond.bond_deviation -0.067 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.007 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C4 A DT 1 ? ? C5 A DT 1 ? ? C6 A DT 1 ? ? 124.14 118.00 6.14 0.60 N 2 1 N3 A DT 1 ? ? C4 A DT 1 ? ? O4 A DT 1 ? ? 124.62 119.90 4.72 0.60 N 3 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.02 108.30 2.72 0.30 N 4 1 CA B XDJ 1 ? ? C B XDJ 1 ? ? N B XDD 2 ? ? 100.15 117.20 -17.05 2.20 Y 5 1 CA B XDD 2 ? ? C B XDD 2 ? ? N B XDY 3 ? ? 95.99 117.20 -21.21 2.20 Y 6 1 CA B XDY 3 ? ? C B XDY 3 ? ? N B XDJ 4 ? ? 99.11 117.20 -18.09 2.20 Y 7 1 CA B XDJ 4 ? ? C B XDJ 4 ? ? N B XDY 5 ? ? 99.28 117.20 -17.92 2.20 Y 8 1 CA B XDY 5 ? ? C B XDY 5 ? ? N B XDJ 6 ? ? 103.48 117.20 -13.72 2.20 Y 9 1 CA B XDJ 6 ? ? C B XDJ 6 ? ? N B XDD 7 ? ? 97.95 117.20 -19.25 2.20 Y 10 1 CA B XDD 7 ? ? C B XDD 7 ? ? N B XDY 8 ? ? 97.13 117.20 -20.07 2.20 Y 11 1 CA B XDY 8 ? ? C B XDY 8 ? ? N B XDD 9 ? ? 100.59 117.20 -16.61 2.20 Y # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 XDJ _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 6 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 XDD _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 7 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -145.39 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 XDY B 3 ? ? 11.05 2 1 XDJ B 4 ? ? 13.74 3 1 XDJ B 6 ? ? 15.29 4 1 XDY B 8 ? ? 10.26 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y+1/2,x+1/2,z+3/4 3 y+1/2,-x+1/2,z+1/4 4 x+1/2,-y+1/2,-z+1/4 5 -x+1/2,y+1/2,-z+3/4 6 -x,-y,z+1/2 7 y,x,-z 8 -y,-x,-z+1/2 # _pdbx_entry_details.entry_id 7KZL _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DT OP3 O N N 71 DT P P N N 72 DT OP1 O N N 73 DT OP2 O N N 74 DT "O5'" O N N 75 DT "C5'" C N N 76 DT "C4'" C N R 77 DT "O4'" O N N 78 DT "C3'" C N S 79 DT "O3'" O N N 80 DT "C2'" C N N 81 DT "C1'" C N R 82 DT N1 N N N 83 DT C2 C N N 84 DT O2 O N N 85 DT N3 N N N 86 DT C4 C N N 87 DT O4 O N N 88 DT C5 C N N 89 DT C7 C N N 90 DT C6 C N N 91 DT HOP3 H N N 92 DT HOP2 H N N 93 DT "H5'" H N N 94 DT "H5''" H N N 95 DT "H4'" H N N 96 DT "H3'" H N N 97 DT "HO3'" H N N 98 DT "H2'" H N N 99 DT "H2''" H N N 100 DT "H1'" H N N 101 DT H3 H N N 102 DT H71 H N N 103 DT H72 H N N 104 DT H73 H N N 105 DT H6 H N N 106 EDO C1 C N N 107 EDO O1 O N N 108 EDO C2 C N N 109 EDO O2 O N N 110 EDO H11 H N N 111 EDO H12 H N N 112 EDO HO1 H N N 113 EDO H21 H N N 114 EDO H22 H N N 115 EDO HO2 H N N 116 HOH O O N N 117 HOH H1 H N N 118 HOH H2 H N N 119 IOD I I N N 120 MOH C C N N 121 MOH O O N N 122 MOH H1 H N N 123 MOH H2 H N N 124 MOH H3 H N N 125 MOH HO H N N 126 XDD C12 C N N 127 XDD C14 C Y N 128 XDD C16 C Y N 129 XDD C10 C N N 130 XDD C11 C N N 131 XDD C C N N 132 XDD C03 C N N 133 XDD C05 C N S 134 XDD CA C N S 135 XDD C08 C N N 136 XDD C09 C N N 137 XDD C17 C Y N 138 XDD C18 C Y N 139 XDD C21 C Y N 140 XDD N04 N N N 141 XDD N N N N 142 XDD N13 N Y N 143 XDD N15 N Y N 144 XDD N19 N N N 145 XDD N20 N Y N 146 XDD N22 N Y N 147 XDD O O N N 148 XDD O23 O N N 149 XDD H121 H N N 150 XDD H122 H N N 151 XDD H141 H N N 152 XDD H101 H N N 153 XDD H102 H N N 154 XDD H032 H N N 155 XDD H031 H N N 156 XDD H051 H N N 157 XDD HA H N N 158 XDD H082 H N N 159 XDD H081 H N N 160 XDD H092 H N N 161 XDD H091 H N N 162 XDD H211 H N N 163 XDD H2 H N N 164 XDD H H N N 165 XDD H192 H N N 166 XDD H191 H N N 167 XDD OXT O N N 168 XDD HXT H N N 169 XDJ C C N N 170 XDJ C03 C N N 171 XDJ C05 C N S 172 XDJ CA C N S 173 XDJ C08 C N N 174 XDJ C09 C N N 175 XDJ C10 C N N 176 XDJ C11 C N N 177 XDJ C12 C N N 178 XDJ C14 C Y N 179 XDJ C16 C Y N 180 XDJ C17 C Y N 181 XDJ C18 C N N 182 XDJ C20 C N N 183 XDJ N04 N N N 184 XDJ N N N N 185 XDJ N13 N Y N 186 XDJ N15 N Y N 187 XDJ N19 N N N 188 XDJ N21 N N N 189 XDJ N22 N N N 190 XDJ O O N N 191 XDJ O23 O N N 192 XDJ O24 O N N 193 XDJ H031 H N N 194 XDJ H032 H N N 195 XDJ H051 H N N 196 XDJ HA H N N 197 XDJ H081 H N N 198 XDJ H082 H N N 199 XDJ H092 H N N 200 XDJ H091 H N N 201 XDJ H102 H N N 202 XDJ H101 H N N 203 XDJ H122 H N N 204 XDJ H121 H N N 205 XDJ H141 H N N 206 XDJ H H N N 207 XDJ H2 H N N 208 XDJ H191 H N N 209 XDJ H211 H N N 210 XDJ H212 H N N 211 XDJ OXT O N N 212 XDJ HXT H N N 213 XDV N10 N N N 214 XDV C02 C N N 215 XDV C03 C N N 216 XDV C05 C N N 217 XDV C06 C N N 218 XDV C08 C N N 219 XDV C09 C N N 220 XDV N01 N N N 221 XDV O04 O N N 222 XDV O07 O N N 223 XDV O11 O N N 224 XDV H101 H N N 225 XDV H102 H N N 226 XDV H021 H N N 227 XDV H022 H N N 228 XDV H032 H N N 229 XDV H031 H N N 230 XDV H052 H N N 231 XDV H051 H N N 232 XDV H062 H N N 233 XDV H061 H N N 234 XDV H082 H N N 235 XDV H081 H N N 236 XDV H1 H N N 237 XDV H2 H N N 238 XDY C C N N 239 XDY C03 C N N 240 XDY C05 C N S 241 XDY CA C N S 242 XDY C08 C N N 243 XDY C09 C N N 244 XDY C10 C N N 245 XDY C11 C N N 246 XDY C12 C N N 247 XDY C14 C N N 248 XDY C16 C N N 249 XDY C17 C N N 250 XDY C18 C N N 251 XDY C19 C N N 252 XDY N04 N N N 253 XDY N N N N 254 XDY N13 N N N 255 XDY N15 N N N 256 XDY O O N N 257 XDY O20 O N N 258 XDY O21 O N N 259 XDY O22 O N N 260 XDY H032 H N N 261 XDY H031 H N N 262 XDY H051 H N N 263 XDY HA H N N 264 XDY H081 H N N 265 XDY H082 H N N 266 XDY H092 H N N 267 XDY H091 H N N 268 XDY H101 H N N 269 XDY H102 H N N 270 XDY H121 H N N 271 XDY H122 H N N 272 XDY H181 H N N 273 XDY H191 H N N 274 XDY H192 H N N 275 XDY H193 H N N 276 XDY H H N N 277 XDY H2 H N N 278 XDY H151 H N N 279 XDY OXT O N N 280 XDY HXT H N N 281 ZN ZN ZN N N 282 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DT OP3 P sing N N 74 DT OP3 HOP3 sing N N 75 DT P OP1 doub N N 76 DT P OP2 sing N N 77 DT P "O5'" sing N N 78 DT OP2 HOP2 sing N N 79 DT "O5'" "C5'" sing N N 80 DT "C5'" "C4'" sing N N 81 DT "C5'" "H5'" sing N N 82 DT "C5'" "H5''" sing N N 83 DT "C4'" "O4'" sing N N 84 DT "C4'" "C3'" sing N N 85 DT "C4'" "H4'" sing N N 86 DT "O4'" "C1'" sing N N 87 DT "C3'" "O3'" sing N N 88 DT "C3'" "C2'" sing N N 89 DT "C3'" "H3'" sing N N 90 DT "O3'" "HO3'" sing N N 91 DT "C2'" "C1'" sing N N 92 DT "C2'" "H2'" sing N N 93 DT "C2'" "H2''" sing N N 94 DT "C1'" N1 sing N N 95 DT "C1'" "H1'" sing N N 96 DT N1 C2 sing N N 97 DT N1 C6 sing N N 98 DT C2 O2 doub N N 99 DT C2 N3 sing N N 100 DT N3 C4 sing N N 101 DT N3 H3 sing N N 102 DT C4 O4 doub N N 103 DT C4 C5 sing N N 104 DT C5 C7 sing N N 105 DT C5 C6 doub N N 106 DT C7 H71 sing N N 107 DT C7 H72 sing N N 108 DT C7 H73 sing N N 109 DT C6 H6 sing N N 110 EDO C1 O1 sing N N 111 EDO C1 C2 sing N N 112 EDO C1 H11 sing N N 113 EDO C1 H12 sing N N 114 EDO O1 HO1 sing N N 115 EDO C2 O2 sing N N 116 EDO C2 H21 sing N N 117 EDO C2 H22 sing N N 118 EDO O2 HO2 sing N N 119 HOH O H1 sing N N 120 HOH O H2 sing N N 121 MOH C O sing N N 122 MOH C H1 sing N N 123 MOH C H2 sing N N 124 MOH C H3 sing N N 125 MOH O HO sing N N 126 XDD C09 C10 sing N N 127 XDD C09 C08 sing N N 128 XDD C10 C05 sing N N 129 XDD O C doub N N 130 XDD C C03 sing N N 131 XDD C08 CA sing N N 132 XDD C03 N04 sing N N 133 XDD C05 CA sing N N 134 XDD C05 N04 sing N N 135 XDD CA N sing N N 136 XDD N04 C11 sing N N 137 XDD C11 O23 doub N N 138 XDD C11 C12 sing N N 139 XDD N22 C21 doub Y N 140 XDD N22 C16 sing Y N 141 XDD C12 N13 sing N N 142 XDD C21 N20 sing Y N 143 XDD C16 N13 sing Y N 144 XDD C16 C17 doub Y N 145 XDD N13 C14 sing Y N 146 XDD N20 C18 doub Y N 147 XDD C17 C18 sing Y N 148 XDD C17 N15 sing Y N 149 XDD C18 N19 sing N N 150 XDD C14 N15 doub Y N 151 XDD C12 H121 sing N N 152 XDD C12 H122 sing N N 153 XDD C14 H141 sing N N 154 XDD C10 H101 sing N N 155 XDD C10 H102 sing N N 156 XDD C03 H032 sing N N 157 XDD C03 H031 sing N N 158 XDD C05 H051 sing N N 159 XDD CA HA sing N N 160 XDD C08 H082 sing N N 161 XDD C08 H081 sing N N 162 XDD C09 H092 sing N N 163 XDD C09 H091 sing N N 164 XDD C21 H211 sing N N 165 XDD N H2 sing N N 166 XDD N H sing N N 167 XDD N19 H192 sing N N 168 XDD N19 H191 sing N N 169 XDD C OXT sing N N 170 XDD OXT HXT sing N N 171 XDJ C08 C09 sing N N 172 XDJ C08 CA sing N N 173 XDJ C09 C10 sing N N 174 XDJ CA N sing N N 175 XDJ CA C05 sing N N 176 XDJ C10 C05 sing N N 177 XDJ O C doub N N 178 XDJ C05 N04 sing N N 179 XDJ C03 C sing N N 180 XDJ C03 N04 sing N N 181 XDJ N04 C11 sing N N 182 XDJ C11 C12 sing N N 183 XDJ C11 O24 doub N N 184 XDJ C12 N13 sing N N 185 XDJ N13 C14 sing Y N 186 XDJ N13 C16 sing Y N 187 XDJ C14 N15 doub Y N 188 XDJ N22 C16 sing N N 189 XDJ N22 C20 doub N N 190 XDJ C16 C17 doub Y N 191 XDJ N15 C17 sing Y N 192 XDJ C17 C18 sing N N 193 XDJ C20 N21 sing N N 194 XDJ C20 N19 sing N N 195 XDJ N19 C18 sing N N 196 XDJ C18 O23 doub N N 197 XDJ C03 H031 sing N N 198 XDJ C03 H032 sing N N 199 XDJ C05 H051 sing N N 200 XDJ CA HA sing N N 201 XDJ C08 H081 sing N N 202 XDJ C08 H082 sing N N 203 XDJ C09 H092 sing N N 204 XDJ C09 H091 sing N N 205 XDJ C10 H102 sing N N 206 XDJ C10 H101 sing N N 207 XDJ C12 H122 sing N N 208 XDJ C12 H121 sing N N 209 XDJ C14 H141 sing N N 210 XDJ N H sing N N 211 XDJ N H2 sing N N 212 XDJ N19 H191 sing N N 213 XDJ N21 H211 sing N N 214 XDJ N21 H212 sing N N 215 XDJ C OXT sing N N 216 XDJ OXT HXT sing N N 217 XDV N01 C02 sing N N 218 XDV C02 C03 sing N N 219 XDV O04 C03 sing N N 220 XDV O04 C05 sing N N 221 XDV C05 C06 sing N N 222 XDV C06 O07 sing N N 223 XDV O07 C08 sing N N 224 XDV C08 C09 sing N N 225 XDV O11 C09 doub N N 226 XDV C09 N10 sing N N 227 XDV N10 H101 sing N N 228 XDV N10 H102 sing N N 229 XDV C02 H021 sing N N 230 XDV C02 H022 sing N N 231 XDV C03 H032 sing N N 232 XDV C03 H031 sing N N 233 XDV C05 H052 sing N N 234 XDV C05 H051 sing N N 235 XDV C06 H062 sing N N 236 XDV C06 H061 sing N N 237 XDV C08 H082 sing N N 238 XDV C08 H081 sing N N 239 XDV N01 H1 sing N N 240 XDV N01 H2 sing N N 241 XDY C09 C08 sing N N 242 XDY C09 C10 sing N N 243 XDY C08 CA sing N N 244 XDY C10 C05 sing N N 245 XDY O C doub N N 246 XDY CA C05 sing N N 247 XDY CA N sing N N 248 XDY C C03 sing N N 249 XDY C03 N04 sing N N 250 XDY C05 N04 sing N N 251 XDY N04 C11 sing N N 252 XDY C11 O22 doub N N 253 XDY C11 C12 sing N N 254 XDY C12 N13 sing N N 255 XDY O21 C14 doub N N 256 XDY N13 C14 sing N N 257 XDY N13 C18 sing N N 258 XDY C14 N15 sing N N 259 XDY C18 C17 doub N N 260 XDY N15 C16 sing N N 261 XDY C17 C16 sing N N 262 XDY C17 C19 sing N N 263 XDY C16 O20 doub N N 264 XDY C03 H032 sing N N 265 XDY C03 H031 sing N N 266 XDY C05 H051 sing N N 267 XDY CA HA sing N N 268 XDY C08 H081 sing N N 269 XDY C08 H082 sing N N 270 XDY C09 H092 sing N N 271 XDY C09 H091 sing N N 272 XDY C10 H101 sing N N 273 XDY C10 H102 sing N N 274 XDY C12 H121 sing N N 275 XDY C12 H122 sing N N 276 XDY C18 H181 sing N N 277 XDY C19 H191 sing N N 278 XDY C19 H192 sing N N 279 XDY C19 H193 sing N N 280 XDY N H sing N N 281 XDY N H2 sing N N 282 XDY N15 H151 sing N N 283 XDY C OXT sing N N 284 XDY OXT HXT sing N N 285 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ZIA-DK031143 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 XDD ? ? XDD ? ? 'SUBJECT OF INVESTIGATION' ? 2 XDJ ? ? XDJ ? ? 'SUBJECT OF INVESTIGATION' ? 3 XDV ? ? XDV ? ? 'SUBJECT OF INVESTIGATION' ? 4 XDY ? ? XDY ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details I-SAD # _space_group.name_H-M_alt 'P 43 21 2' _space_group.name_Hall 'P 4nw 2abw' _space_group.IT_number 96 _space_group.crystal_system tetragonal _space_group.id 1 # _atom_sites.entry_id 7KZL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.018280 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018280 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025231 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 24.73122 6.32584 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? I ? ? 40.26819 12.56501 1.42647 27.02115 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 15.80542 1.70748 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 1.42069 35.72801 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? ZN ? ? 24.64596 5.25405 2.14387 29.76375 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_