HEADER PLANT PROTEIN 21-DEC-20 7L54 TITLE SOLUTION NMR STRUCTURE OF THE CYCLIC PLANT PROTEIN PDP-23 IN SDS TITLE 2 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC PLANT PROTEIN PDP-23; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ZINNIA ELEGANS; SOURCE 4 ORGANISM_TAXID: 34245 KEYWDS MACROCYCLIC PEPTIDE, PAWS DERIVED PEPTIDE, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.J.ROSENGREN,C.D.PAYNE REVDAT 4 06-NOV-24 7L54 1 REMARK REVDAT 3 14-JUN-23 7L54 1 REMARK REVDAT 2 09-JUN-21 7L54 1 JRNL REVDAT 1 20-JAN-21 7L54 0 JRNL AUTH C.D.PAYNE,B.FRANKE,M.F.FISHER,F.HAJIAGHAALIPOUR, JRNL AUTH 2 C.E.MCALEESE,A.SONG,C.ELIASSON,J.ZHANG,A.S.JAYASENA, JRNL AUTH 3 G.VADLAMANI,R.J.CLARK,R.F.MINCHIN,J.S.MYLNE,K.J.ROSENGREN JRNL TITL A CHAMELEONIC MACROCYCLIC PEPTIDE WITH DRUG DELIVERY JRNL TITL 2 APPLICATIONS. JRNL REF CHEM SCI V. 12 6670 2021 JRNL REFN ISSN 2041-6520 JRNL PMID 34040741 JRNL DOI 10.1039/D1SC00692D REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CNS REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING USING TORSION ANGLE REMARK 3 DYNAMICS REMARK 4 REMARK 4 7L54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253457. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 288; 293; 303; 308 REMARK 210 PH : 5; 5; 5; 5; 5 REMARK 210 IONIC STRENGTH : 0; 0; 0; 0; 0 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MG/ML PDP-23, 100 MM SDS, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1D; 2D 1H-1H TOCSY; 2D 1H-1H REMARK 210 NOESY; 2D 1H-13C HSQC; 2D 1H-15N REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 6 -4.62 74.20 REMARK 500 2 LEU A 21 -66.33 -99.84 REMARK 500 6 PRO A 18 33.76 -73.84 REMARK 500 8 PRO A 18 -72.31 -45.53 REMARK 500 8 LEU A 21 -64.65 -94.35 REMARK 500 10 TRP A 19 -52.61 175.42 REMARK 500 11 PRO A 18 32.81 -68.62 REMARK 500 12 PRO A 18 -81.36 -49.69 REMARK 500 12 LEU A 21 -65.41 -97.29 REMARK 500 13 LEU A 21 -72.97 -76.36 REMARK 500 14 HIS A 6 -4.02 72.77 REMARK 500 14 PRO A 18 -173.97 -69.02 REMARK 500 15 PRO A 18 -72.68 -42.76 REMARK 500 16 LEU A 21 -70.23 -100.27 REMARK 500 19 PHE A 2 -173.72 -171.46 REMARK 500 19 PRO A 18 -73.63 -49.67 REMARK 500 19 PRO A 20 65.07 -115.67 REMARK 500 19 LEU A 21 -81.57 -112.45 REMARK 500 20 PRO A 18 121.79 -34.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7L51 RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF THE DIMERIC FORM OF THE CYCLIC PLANT REMARK 900 PROTEIN PDP-23 IN H2O REMARK 900 RELATED ID: 7L53 RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF THE MONOMERIC FORM OF THE CYCLIC PLANT REMARK 900 PROTEIN PDP-23 IN CD3CN/H2O REMARK 900 RELATED ID: 30829 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF THE CYCLIC PLANT PROTEIN PDP-23 IN SDS REMARK 900 MICELLES REMARK 900 RELATED ID: 7L55 RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF THE CYCLIC PLANT PROTEIN PDP-23 IN DPC REMARK 900 MICELLES DBREF 7L54 A 1 28 PDB 7L54 7L54 1 28 SEQRES 1 A 28 GLY PHE CYS TRP HIS HIS SER CYS VAL PRO SER GLY THR SEQRES 2 A 28 CYS ALA ASP PHE PRO TRP PRO LEU GLY HIS GLN CYS PHE SEQRES 3 A 28 PRO ASP SHEET 1 AA1 2 PHE A 2 TRP A 4 0 SHEET 2 AA1 2 SER A 7 VAL A 9 -1 O SER A 7 N TRP A 4 SHEET 1 AA2 2 THR A 13 PHE A 17 0 SHEET 2 AA2 2 GLY A 22 PHE A 26 -1 O GLN A 24 N ALA A 15 SSBOND 1 CYS A 3 CYS A 8 1555 1555 2.04 SSBOND 2 CYS A 14 CYS A 25 1555 1555 2.03 LINK N GLY A 1 C ASP A 28 1555 1555 1.30 CISPEP 1 TRP A 19 PRO A 20 1 8.17 CISPEP 2 TRP A 19 PRO A 20 2 -11.94 CISPEP 3 TRP A 19 PRO A 20 3 5.79 CISPEP 4 TRP A 19 PRO A 20 4 -0.86 CISPEP 5 TRP A 19 PRO A 20 5 3.24 CISPEP 6 TRP A 19 PRO A 20 6 4.52 CISPEP 7 TRP A 19 PRO A 20 7 -1.91 CISPEP 8 TRP A 19 PRO A 20 8 -9.22 CISPEP 9 TRP A 19 PRO A 20 9 3.51 CISPEP 10 TRP A 19 PRO A 20 10 3.81 CISPEP 11 TRP A 19 PRO A 20 11 4.11 CISPEP 12 TRP A 19 PRO A 20 12 -6.84 CISPEP 13 TRP A 19 PRO A 20 13 4.69 CISPEP 14 TRP A 19 PRO A 20 14 2.23 CISPEP 15 TRP A 19 PRO A 20 15 -6.51 CISPEP 16 TRP A 19 PRO A 20 16 -9.32 CISPEP 17 TRP A 19 PRO A 20 17 0.71 CISPEP 18 TRP A 19 PRO A 20 18 0.44 CISPEP 19 TRP A 19 PRO A 20 19 -8.88 CISPEP 20 TRP A 19 PRO A 20 20 6.40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1