HEADER ISOMERASE 23-DEC-20 7L6S TITLE CRYSTAL STRUCTURE OF THE ATPASE AND TRANSDUCER DOMAINS OF DNA TITLE 2 TOPOISOMERASE II FROM BALAMUTHIA MANDRILLARIS CDC:V039: BABOON/SAN TITLE 3 DIEGO/1986 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE II; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ATPASE AND TRANSDUCER DOMAINS; COMPND 5 EC: 5.6.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BALAMUTHIA MANDRILLARIS; SOURCE 3 ORGANISM_TAXID: 66527; SOURCE 4 STRAIN: CDC:V039: BABOON/SAN DIEGO/1986; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: BAMAA.19955.B.B2 KEYWDS SSGCID, DNA TOPOISOMERASE II, BALAMUTHIA MANDRILLARIS, ATPASE DOMAIN, KEYWDS 2 TRANSDUCER DOMAINS, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 18-OCT-23 7L6S 1 REMARK REVDAT 2 20-JAN-21 7L6S 1 TITLE REVDAT 1 13-JAN-21 7L6S 0 JRNL AUTH J.ABENDROTH,D.FOX III,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF THE ATPASE AND TRANSDUCER DOMAINS OF JRNL TITL 2 DNA TOPOISOMERASE II FROM BALAMUTHIA MANDRILLARIS LEPTO ID: JRNL TITL 3 CDC:V039: BABOON/SAN DIEGO/1986 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC4 4035 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.510 REMARK 3 FREE R VALUE TEST SET COUNT : 2066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7400 - 4.8100 1.00 2527 133 0.1640 0.1756 REMARK 3 2 4.8100 - 3.8200 1.00 2431 126 0.1361 0.1574 REMARK 3 3 3.8200 - 3.3300 1.00 2394 130 0.1565 0.1897 REMARK 3 4 3.3300 - 3.0300 1.00 2381 126 0.1742 0.2374 REMARK 3 5 3.0300 - 2.8100 1.00 2361 143 0.1712 0.1855 REMARK 3 6 2.8100 - 2.6500 1.00 2357 146 0.1675 0.2008 REMARK 3 7 2.6500 - 2.5100 1.00 2361 113 0.1749 0.2007 REMARK 3 8 2.5100 - 2.4000 1.00 2330 145 0.1744 0.2187 REMARK 3 9 2.4000 - 2.3100 1.00 2339 152 0.1808 0.2008 REMARK 3 10 2.3100 - 2.2300 1.00 2307 163 0.1730 0.2046 REMARK 3 11 2.2300 - 2.1600 1.00 2359 132 0.1769 0.1834 REMARK 3 12 2.1600 - 2.1000 1.00 2319 151 0.1916 0.2241 REMARK 3 13 2.1000 - 2.0500 1.00 2323 131 0.2077 0.2266 REMARK 3 14 2.0500 - 2.0000 1.00 2323 137 0.2268 0.2750 REMARK 3 15 2.0000 - 1.9500 1.00 2325 138 0.2686 0.3051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.197 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.341 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3269 REMARK 3 ANGLE : 0.800 4455 REMARK 3 CHIRALITY : 0.055 502 REMARK 3 PLANARITY : 0.007 594 REMARK 3 DIHEDRAL : 12.956 1229 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4453 28.3893 -16.7743 REMARK 3 T TENSOR REMARK 3 T11: 0.2226 T22: 0.2173 REMARK 3 T33: 0.2182 T12: -0.0278 REMARK 3 T13: 0.0195 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 2.4604 L22: 1.5860 REMARK 3 L33: 2.7542 L12: 0.4581 REMARK 3 L13: 0.4793 L23: -0.2970 REMARK 3 S TENSOR REMARK 3 S11: -0.1655 S12: 0.2296 S13: 0.0777 REMARK 3 S21: -0.0997 S22: 0.0764 S23: -0.1909 REMARK 3 S31: -0.5441 S32: 0.3969 S33: 0.0379 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8300 19.7624 -4.2358 REMARK 3 T TENSOR REMARK 3 T11: 0.1686 T22: 0.2492 REMARK 3 T33: 0.2880 T12: -0.0076 REMARK 3 T13: -0.0291 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 2.5725 L22: 2.2086 REMARK 3 L33: 1.8458 L12: -0.1482 REMARK 3 L13: 0.8480 L23: 0.1073 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: -0.0285 S13: -0.2912 REMARK 3 S21: 0.1904 S22: 0.0108 S23: -0.3847 REMARK 3 S31: -0.0293 S32: 0.2870 S33: 0.0335 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 366 THROUGH 519 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0919 49.9221 -1.5331 REMARK 3 T TENSOR REMARK 3 T11: 0.3199 T22: 0.2875 REMARK 3 T33: 0.1922 T12: 0.0027 REMARK 3 T13: -0.0310 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 2.4051 L22: 4.6882 REMARK 3 L33: 0.8298 L12: -0.6649 REMARK 3 L13: -0.9599 L23: -0.3144 REMARK 3 S TENSOR REMARK 3 S11: 0.1237 S12: -0.2124 S13: 0.4514 REMARK 3 S21: 0.4172 S22: -0.0295 S23: -0.1799 REMARK 3 S31: -0.2522 S32: 0.0191 S33: -0.0841 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7L6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1000253798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : BERYIILUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37513 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.719 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.81 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: PDB ENTRY 1ZXM (AS PER MORDA) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 MG/ML BAMAA.19955.B.B2.PW38788 IN REMARK 280 MICROLYTICS MCSG1 SCREEN, CONDITION A1 (20% W/V PEG2000, 100 MM REMARK 280 HEPES FREE ACID / NAOH, PH 7.5) + 3 MM MAGNESIUM CHLORIDE/AMPPNP, REMARK 280 TRAY 315297 A1, CRYOPROTECTANT: 20% ETHYLENE GLYCOL + MAGNESIUM REMARK 280 CHLORIDE/AMPPNP, PUCK CGP8-1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.84500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.84500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.88500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.62500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.88500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.62500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.84500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.88500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 93.62500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.84500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.88500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 93.62500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -30.84500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 103 REMARK 465 ALA A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 SER A 111 REMARK 465 SER A 112 REMARK 465 ALA A 113 REMARK 465 ALA A 114 REMARK 465 ASP A 115 REMARK 465 ARG A 116 REMARK 465 ALA A 117 REMARK 465 ALA A 118 REMARK 465 PRO A 376 REMARK 465 ASP A 377 REMARK 465 VAL A 378 REMARK 465 VAL A 379 REMARK 465 GLU A 380 REMARK 465 ALA A 520 REMARK 465 LEU A 521 REMARK 465 ASN A 522 REMARK 465 ARG A 523 REMARK 465 ALA A 524 REMARK 465 SER A 525 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 LYS A 367 CG CD CE NZ REMARK 470 ASN A 375 CG OD1 ND2 REMARK 470 LEU A 400 CG CD1 CD2 REMARK 470 ASP A 401 CG OD1 OD2 REMARK 470 GLN A 403 CG CD OE1 NE2 REMARK 470 LYS A 446 CG CD CE NZ REMARK 470 ARG A 504 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 507 CG CD OE1 OE2 REMARK 470 GLU A 508 CG CD OE1 OE2 REMARK 470 TRP A 512 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 512 CZ3 CH2 REMARK 470 LEU A 515 CG CD1 CD2 REMARK 470 LYS A 516 CG CD CE NZ REMARK 470 LYS A 518 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 193 -7.85 -59.91 REMARK 500 ARG A 255 -31.00 -140.46 REMARK 500 ASP A 325 -127.08 35.56 REMARK 500 HIS A 374 50.45 -150.46 REMARK 500 ASN A 467 61.44 35.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 184 OD1 REMARK 620 2 ANP A 600 O3G 165.9 REMARK 620 3 ANP A 600 O1B 98.3 89.3 REMARK 620 4 ANP A 600 O2A 90.1 101.8 90.6 REMARK 620 5 HOH A 712 O 86.5 86.4 174.8 87.5 REMARK 620 6 HOH A 781 O 79.6 88.3 92.2 169.6 90.5 REMARK 620 N 1 2 3 4 5 DBREF 7L6S A 103 525 PDB 7L6S 7L6S 103 525 SEQRES 1 A 423 MET ALA HIS HIS HIS HIS HIS HIS SER SER ALA ALA ASP SEQRES 2 A 423 ARG ALA ALA LYS THR PRO GLU GLU LEU TYR GLN LYS LYS SEQRES 3 A 423 THR PRO ILE GLU HIS VAL LEU LEU ARG PRO ASP THR TYR SEQRES 4 A 423 LEU GLY SER VAL LEU ARG THR THR GLU PRO GLY MET TRP SEQRES 5 A 423 VAL TYR ASP PRO ASP SER ARG ARG MET VAL GLU ARG GLU SEQRES 6 A 423 CYS THR TYR VAL PRO ALA LEU TYR LYS ILE PHE ASP GLU SEQRES 7 A 423 ILE LEU VAL ASN ALA ALA ASP ASN LYS GLN ARG ASP PRO SEQRES 8 A 423 ASN THR SER THR ILE GLU VAL ASN ILE ASP ALA ASP THR SEQRES 9 A 423 ASN THR ILE SER VAL PHE ASN ASP GLY ARG GLY ILE PRO SEQRES 10 A 423 VAL HIS VAL HIS LYS THR GLU GLY MET TYR LEU PRO GLU SEQRES 11 A 423 MET LEU PHE GLY HIS LEU LEU THR SER SER ASN TYR ASP SEQRES 12 A 423 ASP SER GLU ALA LYS VAL THR GLY GLY ARG ASN GLY TYR SEQRES 13 A 423 GLY ALA LYS LEU THR ASN ILE TYR SER LYS GLU PHE THR SEQRES 14 A 423 VAL GLU THR VAL ASP CYS GLU ARG GLY LEU ARG PHE GLN SEQRES 15 A 423 GLN THR TRP ARG ASP ASN MET SER VAL ARG GLU GLU PRO SEQRES 16 A 423 LEU ILE THR PRO LEU SER PRO GLU GLU LYS ALA HIS GLY SEQRES 17 A 423 ASP TYR THR LYS ILE THR PHE ARG PRO ASP LEU SER ARG SEQRES 18 A 423 LEU ASP SER MET HIS SER LEU ARG ASP GLY ASP ILE ILE SEQRES 19 A 423 GLY VAL MET SER ARG ARG ALA PHE ASP VAL ALA ALA CYS SEQRES 20 A 423 ASN GLU GLY LEU ASP VAL TYR LEU ASN GLY GLU LYS LEU SEQRES 21 A 423 PRO SER GLY PHE LYS GLY TYR VAL GLN LEU TYR HIS ASN SEQRES 22 A 423 PRO ASP VAL VAL GLU ASP ALA PHE VAL PHE GLU GLN VAL SEQRES 23 A 423 ASN ASP ARG TRP GLN ILE VAL VAL GLY PRO SER LEU ASP SEQRES 24 A 423 GLY GLN PHE THR GLN GLN SER PHE VAL ASN SER ILE HIS SEQRES 25 A 423 THR ARG ARG GLY GLY THR HIS VAL THR TYR ILE LEU ASP SEQRES 26 A 423 GLN LEU THR LYS HIS ILE VAL ALA SER ILE ARG ARG ASP SEQRES 27 A 423 HIS PRO ASP LEU THR LYS ILE VAL GLN PRO ALA LEU VAL SEQRES 28 A 423 ARG ASN HIS LEU SER LEU PHE ILE ASN ALA LEU ILE GLU SEQRES 29 A 423 ASN PRO SER PHE ASP SER GLN THR LYS GLU THR LEU THR SEQRES 30 A 423 THR GLN PRO SER ARG PHE GLY SER LYS CYS LYS LEU SER SEQRES 31 A 423 ASP GLU PHE LEU GLU ARG VAL VAL GLN ARG THR ARG ILE SEQRES 32 A 423 VAL GLU GLU VAL THR ARG TRP ALA GLU LEU LYS GLN LYS SEQRES 33 A 423 ASP ALA LEU ASN ARG ALA SER HET ANP A 600 31 HET MG A 601 1 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MG MG 2+ FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 HOH *295(H2 O) HELIX 1 AA1 THR A 120 TYR A 125 1 6 HELIX 2 AA2 THR A 129 ARG A 137 1 9 HELIX 3 AA3 PRO A 138 GLY A 143 1 6 HELIX 4 AA4 VAL A 171 ASP A 192 1 22 HELIX 5 AA5 LEU A 230 HIS A 237 1 8 HELIX 6 AA6 TYR A 258 TYR A 266 1 9 HELIX 7 AA7 SER A 303 GLY A 310 1 8 HELIX 8 AA8 LEU A 321 LEU A 324 5 4 HELIX 9 AA9 ASP A 334 ASN A 350 1 17 HELIX 10 AB1 GLY A 365 TYR A 373 1 9 HELIX 11 AB2 THR A 420 HIS A 441 1 22 HELIX 12 AB3 PRO A 442 THR A 445 5 4 HELIX 13 AB4 GLN A 449 ASN A 455 1 7 HELIX 14 AB5 GLN A 481 PHE A 485 5 5 HELIX 15 AB6 SER A 492 THR A 503 1 12 HELIX 16 AB7 ARG A 504 LYS A 518 1 15 SHEET 1 AA1 2 THR A 148 ASP A 157 0 SHEET 2 AA1 2 ARG A 162 TYR A 170 -1 O ARG A 162 N ASP A 157 SHEET 1 AA2 3 VAL A 293 ARG A 294 0 SHEET 2 AA2 3 LEU A 281 ARG A 288 -1 N ARG A 288 O VAL A 293 SHEET 3 AA2 3 LEU A 298 PRO A 301 -1 O LEU A 298 N GLN A 284 SHEET 1 AA3 8 VAL A 293 ARG A 294 0 SHEET 2 AA3 8 LEU A 281 ARG A 288 -1 N ARG A 288 O VAL A 293 SHEET 3 AA3 8 SER A 267 ASP A 276 -1 N THR A 274 O PHE A 283 SHEET 4 AA3 8 TYR A 312 PRO A 319 -1 O THR A 316 N THR A 271 SHEET 5 AA3 8 THR A 208 ASP A 214 -1 N ILE A 209 O PHE A 317 SHEET 6 AA3 8 THR A 197 ASP A 203 -1 N ASP A 203 O THR A 208 SHEET 7 AA3 8 ASP A 354 LEU A 357 1 O TYR A 356 N VAL A 200 SHEET 8 AA3 8 GLU A 360 LYS A 361 -1 O GLU A 360 N LEU A 357 SHEET 1 AA4 2 VAL A 222 HIS A 223 0 SHEET 2 AA4 2 MET A 228 TYR A 229 -1 O MET A 228 N HIS A 223 SHEET 1 AA5 5 VAL A 384 ASN A 389 0 SHEET 2 AA5 5 TRP A 392 PRO A 398 -1 O VAL A 396 N VAL A 384 SHEET 3 AA5 5 LEU A 457 ALA A 463 -1 O SER A 458 N GLY A 397 SHEET 4 AA5 5 THR A 405 VAL A 410 1 N GLN A 407 O LEU A 459 SHEET 5 AA5 5 ILE A 413 HIS A 414 -1 O ILE A 413 N VAL A 410 SHEET 1 AA6 2 GLY A 418 GLY A 419 0 SHEET 2 AA6 2 THR A 477 LEU A 478 1 O LEU A 478 N GLY A 418 LINK OD1 ASN A 184 MG MG A 601 1555 1555 2.05 LINK O3G ANP A 600 MG MG A 601 1555 1555 2.08 LINK O1B ANP A 600 MG MG A 601 1555 1555 2.18 LINK O2A ANP A 600 MG MG A 601 1555 1555 2.11 LINK MG MG A 601 O HOH A 712 1555 1555 2.13 LINK MG MG A 601 O HOH A 781 1555 1555 2.18 CRYST1 87.770 187.250 61.690 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011393 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016210 0.00000