HEADER TRANSFERASE 05-JAN-21 7L9U TITLE CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE TITLE 2 UMAA FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH A 12-MER PEG COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE UMAA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYTUD.00149.B.B1; COMPND 5 SYNONYM: SAM-DEPENDENT METHYLTRANSFERASE UMAA; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 ATCC: 25618; SOURCE 6 GENE: UMAA, RV0469, LH57_02505; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MYTUD.00149.B.B1 KEYWDS SSGCID, S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE, SAM- KEYWDS 2 DEPENDENT METHYLTRANSFERASE, UMAA, MYCOBACTERIUM TUBERCULOSIS, KEYWDS 3 SHORT-CHAIN FATTY ACID MODIFICATION, STRUCTURAL GENOMICS, SEATTLE KEYWDS 4 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 06-MAR-24 7L9U 1 REMARK REVDAT 1 10-FEB-21 7L9U 0 JRNL AUTH J.ABENDROTH,M.J.WEISS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE-DEPENDENT JRNL TITL 2 METHYLTRANSFERASE UMAA FROM MYCOBACTERIUM TUBERCULOSIS IN JRNL TITL 3 COMPLEX WITH A 12-MER PEG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC4 4035 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.640 REMARK 3 FREE R VALUE TEST SET COUNT : 2055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4600 - 3.8200 0.98 2877 162 0.1408 0.1374 REMARK 3 2 3.8200 - 3.0300 1.00 2848 138 0.1421 0.1629 REMARK 3 3 3.0300 - 2.6500 1.00 2815 152 0.1638 0.1846 REMARK 3 4 2.6500 - 2.4100 1.00 2818 150 0.1690 0.1901 REMARK 3 5 2.4100 - 2.2400 1.00 2790 143 0.1567 0.1819 REMARK 3 6 2.2400 - 2.1000 1.00 2807 168 0.1585 0.1967 REMARK 3 7 2.1000 - 2.0000 1.00 2805 134 0.1622 0.1891 REMARK 3 8 2.0000 - 1.9100 1.00 2736 164 0.1687 0.2396 REMARK 3 9 1.9100 - 1.8400 1.00 2836 123 0.1843 0.2149 REMARK 3 10 1.8400 - 1.7700 1.00 2810 116 0.1683 0.1860 REMARK 3 11 1.7700 - 1.7200 1.00 2833 109 0.1719 0.1946 REMARK 3 12 1.7200 - 1.6700 1.00 2803 145 0.1683 0.2067 REMARK 3 13 1.6700 - 1.6300 1.00 2789 125 0.1830 0.1965 REMARK 3 14 1.6300 - 1.5900 1.00 2805 110 0.2047 0.2383 REMARK 3 15 1.5900 - 1.5500 1.00 2826 116 0.2410 0.2823 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.155 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2405 REMARK 3 ANGLE : 0.978 3243 REMARK 3 CHIRALITY : 0.055 347 REMARK 3 PLANARITY : 0.008 419 REMARK 3 DIHEDRAL : 15.739 898 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5461 14.3135 9.1434 REMARK 3 T TENSOR REMARK 3 T11: 0.3335 T22: 0.3902 REMARK 3 T33: 0.6391 T12: -0.1212 REMARK 3 T13: 0.1416 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 1.9680 L22: 0.1021 REMARK 3 L33: 0.8618 L12: 0.2374 REMARK 3 L13: 0.8915 L23: 0.1358 REMARK 3 S TENSOR REMARK 3 S11: 0.1713 S12: 0.2692 S13: 0.1926 REMARK 3 S21: -0.4051 S22: 0.0410 S23: -0.8988 REMARK 3 S31: -0.3795 S32: 0.6629 S33: -0.1158 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9668 11.4470 3.1638 REMARK 3 T TENSOR REMARK 3 T11: 0.1460 T22: 0.1586 REMARK 3 T33: 0.1609 T12: -0.0263 REMARK 3 T13: 0.0127 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.1778 L22: 1.7742 REMARK 3 L33: 2.8549 L12: -0.7060 REMARK 3 L13: 0.3904 L23: -0.2350 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: 0.0038 S13: -0.0046 REMARK 3 S21: 0.0212 S22: 0.0108 S23: -0.0063 REMARK 3 S31: 0.0280 S32: -0.1996 S33: 0.0383 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6184 12.0281 -8.2640 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.2432 REMARK 3 T33: 0.2097 T12: -0.0064 REMARK 3 T13: 0.0668 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.2512 L22: 2.2301 REMARK 3 L33: 2.6533 L12: -0.4255 REMARK 3 L13: 0.1908 L23: -0.1593 REMARK 3 S TENSOR REMARK 3 S11: 0.0834 S12: 0.2354 S13: 0.1656 REMARK 3 S21: -0.2632 S22: -0.1186 S23: -0.3595 REMARK 3 S31: -0.0222 S32: 0.1895 S33: 0.0377 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7783 30.6638 6.5572 REMARK 3 T TENSOR REMARK 3 T11: 0.2593 T22: 0.1757 REMARK 3 T33: 0.3253 T12: -0.0268 REMARK 3 T13: 0.0291 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.6302 L22: 1.7450 REMARK 3 L33: 3.4011 L12: 0.0757 REMARK 3 L13: 1.3204 L23: 0.7147 REMARK 3 S TENSOR REMARK 3 S11: -0.1365 S12: -0.0287 S13: 0.4042 REMARK 3 S21: -0.0178 S22: 0.0598 S23: -0.1640 REMARK 3 S31: -0.5779 S32: 0.0058 S33: 0.0572 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1778 32.2264 -3.1715 REMARK 3 T TENSOR REMARK 3 T11: 0.2797 T22: 0.2521 REMARK 3 T33: 0.4834 T12: -0.0260 REMARK 3 T13: 0.0046 T23: 0.0931 REMARK 3 L TENSOR REMARK 3 L11: 0.7106 L22: 1.4629 REMARK 3 L33: 4.1246 L12: -0.3413 REMARK 3 L13: 1.8257 L23: -0.4779 REMARK 3 S TENSOR REMARK 3 S11: -0.2439 S12: 0.4191 S13: 0.5970 REMARK 3 S21: -0.2815 S22: -0.1653 S23: -0.7714 REMARK 3 S31: -0.3909 S32: 0.1799 S33: 0.0974 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2405 19.6482 11.3389 REMARK 3 T TENSOR REMARK 3 T11: 0.1850 T22: 0.1394 REMARK 3 T33: 0.2014 T12: -0.0195 REMARK 3 T13: 0.0056 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.8671 L22: 2.3396 REMARK 3 L33: 1.4789 L12: -0.8316 REMARK 3 L13: 0.9130 L23: -1.0550 REMARK 3 S TENSOR REMARK 3 S11: -0.0990 S12: -0.0456 S13: 0.1959 REMARK 3 S21: 0.2280 S22: -0.0010 S23: -0.2568 REMARK 3 S31: -0.1687 S32: 0.0363 S33: 0.1235 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7L9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000253937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-20; 10-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : APS; ROTATING ANODE REMARK 200 BEAMLINE : 21-ID-F; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872; 1.5418 REMARK 200 MONOCHROMATOR : DIAMOND [111]; NULL REMARK 200 OPTICS : BERYLLIUM LENSES; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300; RIGAKU SATURN REMARK 200 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44265 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.337 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.60600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, PARROT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYTICS MCSG1 SCREEN, CONDITION REMARK 280 C9: 32% (W/V) PEG 4000, 800MM LITHIUM CHLORIDE, 100MM TRIS BASE/ REMARK 280 HCL PH 8.50: MYTUD.00149.B.B1.PW38903, TRAY 318922C9, CRYO: 15% REMARK 280 EG, PUCK YNM8-4. FOR PHASING, A CRYSTAL FROM THE SAME SCREEN AND REMARK 280 WELL SET UP WITH 5MM AMPPNP/MGCL2 WAS INCUBATED FOR 20SEC IN A REMARK 280 SOLUTION OF 10% SATURATED NAI IN EG + 90% RESERVOIR, FOLLOWED BY REMARK 280 A 20SEC SOAK IN 20% OF SATURATED NAI IN EG + 80% RESERVOIR: TRAY REMARK 280 318925C9, CRYO: 20% EG + NAI: PUCK ZXC1-11. ANOMALOUS DATA WERE REMARK 280 COLLECTED AT THE HOME SOURCE AT CUKALPHA RADIATION., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.17333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.58667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.58667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.17333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 553 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 PHE A 199 REMARK 465 PRO A 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 7 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 40 O2 EDO A 302 2.11 REMARK 500 O HOH A 669 O HOH A 670 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 597 O HOH A 631 1556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 218 14.17 80.73 REMARK 500 GLN A 253 -101.65 -123.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 711 DISTANCE = 5.87 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 12P A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYTUD.00149.B RELATED DB: TARGETTRACK DBREF 7L9U A 1 286 UNP Q6MX39 UMAA_MYCTU 1 286 SEQADV 7L9U MET A -7 UNP Q6MX39 INITIATING METHIONINE SEQADV 7L9U ALA A -6 UNP Q6MX39 EXPRESSION TAG SEQADV 7L9U HIS A -5 UNP Q6MX39 EXPRESSION TAG SEQADV 7L9U HIS A -4 UNP Q6MX39 EXPRESSION TAG SEQADV 7L9U HIS A -3 UNP Q6MX39 EXPRESSION TAG SEQADV 7L9U HIS A -2 UNP Q6MX39 EXPRESSION TAG SEQADV 7L9U HIS A -1 UNP Q6MX39 EXPRESSION TAG SEQADV 7L9U HIS A 0 UNP Q6MX39 EXPRESSION TAG SEQRES 1 A 294 MET ALA HIS HIS HIS HIS HIS HIS MET THR GLU LEU ARG SEQRES 2 A 294 PRO PHE TYR GLU GLU SER GLN SER ILE TYR ASP VAL SER SEQRES 3 A 294 ASP GLU PHE PHE SER LEU PHE LEU ASP PRO THR MET ALA SEQRES 4 A 294 TYR THR CYS ALA TYR PHE GLU ARG GLU ASP MET THR LEU SEQRES 5 A 294 GLU GLU ALA GLN ASN ALA LYS PHE ASP LEU ALA LEU ASP SEQRES 6 A 294 LYS LEU HIS LEU GLU PRO GLY MET THR LEU LEU ASP ILE SEQRES 7 A 294 GLY CYS GLY TRP GLY GLY GLY LEU GLN ARG ALA ILE GLU SEQRES 8 A 294 ASN TYR ASP VAL ASN VAL ILE GLY ILE THR LEU SER ARG SEQRES 9 A 294 ASN GLN PHE GLU TYR SER LYS ALA LYS LEU ALA LYS ILE SEQRES 10 A 294 PRO THR GLU ARG SER VAL GLN VAL ARG LEU GLN GLY TRP SEQRES 11 A 294 ASP GLU PHE THR ASP LYS VAL ASP ARG ILE VAL SER ILE SEQRES 12 A 294 GLY ALA PHE GLU ALA PHE LYS MET GLU ARG TYR ALA ALA SEQRES 13 A 294 PHE PHE GLU ARG SER TYR ASP ILE LEU PRO ASP ASP GLY SEQRES 14 A 294 ARG MET LEU LEU HIS THR ILE LEU THR TYR THR GLN LYS SEQRES 15 A 294 GLN MET HIS GLU MET GLY VAL LYS VAL THR MET SER ASP SEQRES 16 A 294 VAL ARG PHE MET LYS PHE ILE GLY GLU GLU ILE PHE PRO SEQRES 17 A 294 GLY GLY GLN LEU PRO ALA GLN GLU ASP ILE PHE LYS PHE SEQRES 18 A 294 ALA GLN ALA ALA ASP PHE SER VAL GLU LYS VAL GLN LEU SEQRES 19 A 294 LEU GLN GLN HIS TYR ALA ARG THR LEU ASN ILE TRP ALA SEQRES 20 A 294 ALA ASN LEU GLU ALA ASN LYS ASP ARG ALA ILE ALA LEU SEQRES 21 A 294 GLN SER GLU GLU ILE TYR ASN LYS TYR MET HIS TYR LEU SEQRES 22 A 294 THR GLY CYS GLU HIS PHE PHE ARG LYS GLY ILE SER ASN SEQRES 23 A 294 VAL GLY GLN PHE THR LEU THR LYS HET 12P A 301 37 HET EDO A 302 4 HET NO3 A 303 4 HET NO3 A 304 4 HET CL A 305 1 HETNAM 12P DODECAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM NO3 NITRATE ION HETNAM CL CHLORIDE ION HETSYN 12P POLYETHYLENE GLYCOL PEG400 HETSYN EDO ETHYLENE GLYCOL FORMUL 2 12P C24 H50 O13 FORMUL 3 EDO C2 H6 O2 FORMUL 4 NO3 2(N O3 1-) FORMUL 6 CL CL 1- FORMUL 7 HOH *311(H2 O) HELIX 1 AA1 SER A 13 VAL A 17 5 5 HELIX 2 AA2 SER A 18 SER A 23 1 6 HELIX 3 AA3 THR A 43 LYS A 58 1 16 HELIX 4 AA4 GLY A 75 TYR A 85 1 11 HELIX 5 AA5 SER A 95 LYS A 108 1 14 HELIX 6 AA6 GLY A 121 PHE A 125 5 5 HELIX 7 AA7 ALA A 137 PHE A 141 5 5 HELIX 8 AA8 LYS A 142 GLU A 144 5 3 HELIX 9 AA9 ARG A 145 LEU A 157 1 13 HELIX 10 AB1 THR A 172 GLY A 180 1 9 HELIX 11 AB2 THR A 184 ILE A 198 1 15 HELIX 12 AB3 ALA A 206 ALA A 217 1 12 HELIX 13 AB4 LEU A 227 ASN A 245 1 19 HELIX 14 AB5 ASN A 245 GLN A 253 1 9 HELIX 15 AB6 SER A 254 LYS A 274 1 21 SHEET 1 AA1 7 VAL A 115 LEU A 119 0 SHEET 2 AA1 7 ASN A 88 THR A 93 1 N GLY A 91 O GLN A 116 SHEET 3 AA1 7 THR A 66 ILE A 70 1 N ASP A 69 O ILE A 90 SHEET 4 AA1 7 ARG A 131 ILE A 135 1 O VAL A 133 N LEU A 68 SHEET 5 AA1 7 ARG A 162 THR A 170 1 O HIS A 166 N SER A 134 SHEET 6 AA1 7 SER A 277 THR A 285 -1 O PHE A 282 N LEU A 165 SHEET 7 AA1 7 SER A 220 LEU A 226 -1 N SER A 220 O THR A 285 SITE 1 AC1 18 ILE A 14 TYR A 15 PHE A 22 TYR A 32 SITE 2 AC1 18 SER A 95 GLN A 98 MET A 185 ILE A 198 SITE 3 AC1 18 TYR A 231 TYR A 261 TYR A 264 CYS A 268 SITE 4 AC1 18 PHE A 271 PHE A 272 SER A 277 HOH A 536 SITE 5 AC1 18 HOH A 570 HOH A 600 SITE 1 AC2 3 GLU A 40 HIS A 230 ARG A 233 SITE 1 AC3 6 THR A 33 CYS A 34 GLY A 136 GLU A 139 SITE 2 AC3 6 HIS A 166 TYR A 231 SITE 1 AC4 5 ARG A 233 ASN A 236 ARG A 273 HOH A 412 SITE 2 AC4 5 HOH A 476 SITE 1 AC5 2 SER A 18 GLN A 253 CRYST1 103.020 103.020 49.760 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009707 0.005604 0.000000 0.00000 SCALE2 0.000000 0.011209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020096 0.00000