HEADER HYDROLASE 08-JAN-21 7LBU TITLE CRYSTAL STRUCTURE OF THE PROPIONIBACTERIUM ACNES SURFACE SIALIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXO-ALPHA-SIALIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SIALIDASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUTIBACTERIUM ACNES; SOURCE 3 ORGANISM_COMMON: PROPIONIBACTERIUM ACNES; SOURCE 4 ORGANISM_TAXID: 1747; SOURCE 5 GENE: B1B09_09755, FD518_10685; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACNE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.Y.YU,G.VOLKERS,N.C.J.STRYNADKA REVDAT 3 18-OCT-23 7LBU 1 REMARK REVDAT 2 30-MAR-22 7LBU 1 JRNL REVDAT 1 08-DEC-21 7LBU 0 JRNL AUTH A.C.Y.YU,G.VOLKERS,S.A.K.JONGKEES,L.J.WORRALL,S.G.WITHERS, JRNL AUTH 2 N.C.J.STRYNADKA JRNL TITL CRYSTAL STRUCTURE OF THE PROPIONIBACTERIUM ACNES SURFACE JRNL TITL 2 SIALIDASE, A DRUG TARGET FOR P. ACNES-ASSOCIATED DISEASES. JRNL REF GLYCOBIOLOGY V. 32 162 2022 JRNL REFN ESSN 1460-2423 JRNL PMID 34792586 JRNL DOI 10.1093/GLYCOB/CWAB094 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 17676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 967 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1247 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2895 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.34000 REMARK 3 B13 (A**2) : 0.22000 REMARK 3 B23 (A**2) : -0.07000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.287 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.696 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2979 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4068 ; 1.913 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 381 ; 7.497 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;37.505 ;22.701 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;14.680 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;16.739 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2335 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): -19.4960 -17.2180 5.8490 REMARK 3 T TENSOR REMARK 3 T11: 0.1677 T22: 0.2118 REMARK 3 T33: 0.2774 T12: 0.0281 REMARK 3 T13: -0.0477 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 2.5798 L22: 2.1663 REMARK 3 L33: 1.0146 L12: -0.3692 REMARK 3 L13: 0.7916 L23: -0.0471 REMARK 3 S TENSOR REMARK 3 S11: 0.0859 S12: -0.0443 S13: -0.1931 REMARK 3 S21: -0.1368 S22: -0.0780 S23: 0.1806 REMARK 3 S31: 0.2918 S32: -0.1851 S33: -0.0079 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): -17.4870 -4.7860 21.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 0.1830 REMARK 3 T33: 0.1866 T12: 0.0690 REMARK 3 T13: 0.0035 T23: 0.0968 REMARK 3 L TENSOR REMARK 3 L11: 0.9993 L22: 0.9977 REMARK 3 L33: 0.8883 L12: -0.1004 REMARK 3 L13: -0.2994 L23: -0.1978 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.1405 S13: -0.1582 REMARK 3 S21: 0.2044 S22: 0.0281 S23: 0.0462 REMARK 3 S31: 0.0448 S32: 0.0272 S33: -0.0257 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3310 10.6890 19.0240 REMARK 3 T TENSOR REMARK 3 T11: 0.0862 T22: 0.1904 REMARK 3 T33: 0.1471 T12: 0.0697 REMARK 3 T13: -0.0189 T23: 0.0735 REMARK 3 L TENSOR REMARK 3 L11: 1.6935 L22: 3.4362 REMARK 3 L33: 0.8494 L12: 0.8981 REMARK 3 L13: 0.1954 L23: 0.4171 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: -0.1166 S13: 0.0166 REMARK 3 S21: 0.2550 S22: 0.0914 S23: -0.2824 REMARK 3 S31: -0.0702 S32: 0.0960 S33: -0.0558 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0620 4.7650 14.8090 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.1906 REMARK 3 T33: 0.1588 T12: 0.0341 REMARK 3 T13: 0.0027 T23: 0.0729 REMARK 3 L TENSOR REMARK 3 L11: 1.2211 L22: 5.6946 REMARK 3 L33: 0.5233 L12: -1.0458 REMARK 3 L13: 0.3567 L23: -0.9587 REMARK 3 S TENSOR REMARK 3 S11: -0.0663 S12: -0.1221 S13: 0.0428 REMARK 3 S21: -0.0055 S22: 0.0238 S23: -0.1954 REMARK 3 S31: -0.0298 S32: 0.1627 S33: 0.0425 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4430 3.2480 5.2070 REMARK 3 T TENSOR REMARK 3 T11: 0.0799 T22: 0.2203 REMARK 3 T33: 0.2101 T12: 0.0510 REMARK 3 T13: -0.0138 T23: 0.0744 REMARK 3 L TENSOR REMARK 3 L11: 2.4342 L22: 1.8913 REMARK 3 L33: 0.1670 L12: -1.1153 REMARK 3 L13: -0.4871 L23: -0.0844 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: 0.2048 S13: -0.0064 REMARK 3 S21: 0.0251 S22: -0.0019 S23: 0.0317 REMARK 3 S31: -0.0077 S32: -0.0680 S33: 0.0045 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 218 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1720 7.9060 2.6720 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.1877 REMARK 3 T33: 0.1681 T12: 0.0393 REMARK 3 T13: 0.0022 T23: 0.0718 REMARK 3 L TENSOR REMARK 3 L11: 1.1007 L22: 0.6533 REMARK 3 L33: 0.5366 L12: -0.1005 REMARK 3 L13: 0.2352 L23: 0.4236 REMARK 3 S TENSOR REMARK 3 S11: 0.0374 S12: 0.0115 S13: -0.0354 REMARK 3 S21: -0.0398 S22: -0.0161 S23: -0.0043 REMARK 3 S31: -0.1088 S32: 0.0600 S33: -0.0214 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 280 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): -25.2680 8.1940 0.6410 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.2098 REMARK 3 T33: 0.1463 T12: 0.0590 REMARK 3 T13: -0.0140 T23: 0.0681 REMARK 3 L TENSOR REMARK 3 L11: 2.9402 L22: 0.9168 REMARK 3 L33: 1.8636 L12: -0.5226 REMARK 3 L13: -0.8057 L23: -0.3993 REMARK 3 S TENSOR REMARK 3 S11: 0.2083 S12: 0.2968 S13: 0.1072 REMARK 3 S21: -0.0474 S22: -0.0824 S23: 0.0850 REMARK 3 S31: -0.1492 S32: -0.0796 S33: -0.1260 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 328 REMARK 3 ORIGIN FOR THE GROUP (A): -19.9850 -10.5950 -7.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: 0.1627 REMARK 3 T33: 0.1933 T12: 0.0762 REMARK 3 T13: -0.0051 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 8.9234 L22: 0.3424 REMARK 3 L33: 17.7716 L12: -0.5827 REMARK 3 L13: 2.3522 L23: -2.4371 REMARK 3 S TENSOR REMARK 3 S11: 0.1271 S12: 0.4100 S13: -0.3489 REMARK 3 S21: -0.0217 S22: -0.1134 S23: 0.0123 REMARK 3 S31: 0.1070 S32: 0.6878 S33: -0.0137 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 329 A 340 REMARK 3 ORIGIN FOR THE GROUP (A): -31.2200 -0.3240 3.2260 REMARK 3 T TENSOR REMARK 3 T11: 0.1459 T22: 0.1963 REMARK 3 T33: 0.2670 T12: 0.0812 REMARK 3 T13: -0.0144 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 4.3666 L22: 1.8807 REMARK 3 L33: 1.4400 L12: -2.5810 REMARK 3 L13: -1.8811 L23: 0.8570 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: -0.0514 S13: -0.6012 REMARK 3 S21: -0.1099 S22: -0.1169 S23: 0.4392 REMARK 3 S31: -0.1530 S32: -0.0648 S33: 0.0823 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 341 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): -32.8080 -0.8830 4.4700 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.2533 REMARK 3 T33: 0.2656 T12: 0.0702 REMARK 3 T13: -0.0297 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 2.8905 L22: 0.7007 REMARK 3 L33: 0.5714 L12: 0.4073 REMARK 3 L13: 0.5398 L23: -0.4740 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: 0.0975 S13: -0.2799 REMARK 3 S21: -0.0245 S22: 0.1104 S23: -0.0058 REMARK 3 S31: 0.0136 S32: -0.0582 S33: -0.0814 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 354 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): -29.9090 -5.5130 8.0140 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.1625 REMARK 3 T33: 0.2063 T12: 0.0412 REMARK 3 T13: -0.0120 T23: 0.0808 REMARK 3 L TENSOR REMARK 3 L11: 1.9298 L22: 1.3868 REMARK 3 L33: 1.7471 L12: -0.5120 REMARK 3 L13: 0.7008 L23: -0.5772 REMARK 3 S TENSOR REMARK 3 S11: 0.1229 S12: -0.0369 S13: -0.2290 REMARK 3 S21: -0.0552 S22: -0.1029 S23: 0.0874 REMARK 3 S31: 0.0935 S32: -0.2015 S33: -0.0200 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 387 A 408 REMARK 3 ORIGIN FOR THE GROUP (A): -30.9120 -11.8680 5.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.0610 T22: 0.1923 REMARK 3 T33: 0.3574 T12: 0.0135 REMARK 3 T13: -0.0324 T23: 0.0746 REMARK 3 L TENSOR REMARK 3 L11: 3.1337 L22: 1.9595 REMARK 3 L33: 5.8754 L12: 0.2494 REMARK 3 L13: 2.4099 L23: 1.5469 REMARK 3 S TENSOR REMARK 3 S11: 0.2477 S12: 0.2068 S13: -0.5038 REMARK 3 S21: -0.0181 S22: 0.1067 S23: 0.2346 REMARK 3 S31: 0.4937 S32: -0.0178 S33: -0.3543 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7LBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EUR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) POLYETHYLENE GLYCOL REMARK 280 MONOMETHYLETHER 2000, 100 MM HEPES, PH 7.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 HIS A 29 REMARK 465 MET A 30 REMARK 465 SER A 31 REMARK 465 GLY A 32 REMARK 465 ARG A 33 REMARK 465 ALA A 34 REMARK 465 PRO A 35 REMARK 465 ALA A 36 REMARK 465 PRO A 37 REMARK 465 VAL A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 THR A 41 REMARK 465 THR A 42 REMARK 465 GLN A 43 REMARK 465 PRO A 44 REMARK 465 LYS A 45 REMARK 465 LEU A 46 REMARK 465 VAL A 47 REMARK 465 THR A 48 REMARK 465 GLY A 49 REMARK 465 ASP A 50 REMARK 465 ILE A 51 REMARK 465 THR A 52 REMARK 465 SER A 53 REMARK 465 THR A 54 REMARK 465 ASP A 55 REMARK 465 GLN A 56 REMARK 465 SER A 57 REMARK 465 GLY A 58 REMARK 465 THR A 59 REMARK 465 ASN A 60 REMARK 465 LEU A 61 REMARK 465 PHE A 62 REMARK 465 PHE A 63 REMARK 465 GLY A 64 REMARK 465 LYS A 65 REMARK 465 LYS A 66 REMARK 465 ILE A 67 REMARK 465 VAL A 68 REMARK 465 ARG A 69 REMARK 465 ASN A 70 REMARK 465 ALA A 71 REMARK 465 ARG A 72 REMARK 465 GLY A 73 REMARK 465 ALA A 74 REMARK 465 ILE A 75 REMARK 465 MET A 76 REMARK 465 LYS A 77 REMARK 465 VAL A 78 REMARK 465 ASP A 79 REMARK 465 ARG A 80 REMARK 465 PRO A 461 REMARK 465 SER A 462 REMARK 465 GLY A 463 REMARK 465 ARG A 464 REMARK 465 PRO A 465 REMARK 465 THR A 466 REMARK 465 SER A 467 REMARK 465 GLY A 468 REMARK 465 LYS A 469 REMARK 465 PRO A 470 REMARK 465 THR A 471 REMARK 465 SER A 472 REMARK 465 GLY A 473 REMARK 465 THR A 474 REMARK 465 SER A 475 REMARK 465 LEU A 476 REMARK 465 PRO A 477 REMARK 465 PRO A 478 REMARK 465 THR A 479 REMARK 465 ALA A 480 REMARK 465 THR A 481 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 114 CG HIS A 114 CD2 0.056 REMARK 500 HIS A 201 CG HIS A 201 CD2 0.055 REMARK 500 HIS A 222 CG HIS A 222 CD2 0.058 REMARK 500 HIS A 302 CG HIS A 302 CD2 0.058 REMARK 500 TRP A 438 CE2 TRP A 438 CD2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 326 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 122 82.20 73.66 REMARK 500 ALA A 144 31.04 -82.61 REMARK 500 ASP A 185 78.02 59.79 REMARK 500 TYR A 205 -91.97 -114.61 REMARK 500 ASP A 312 -158.84 -151.27 REMARK 500 GLU A 313 118.87 -39.92 REMARK 500 THR A 362 77.46 69.66 REMARK 500 THR A 393 -20.28 -140.17 REMARK 500 ARG A 395 59.30 -90.84 REMARK 500 ASN A 397 67.41 66.29 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7LBU A 31 481 UNP A0A2B7IY20_CUTAC DBREF2 7LBU A A0A2B7IY20 31 481 SEQADV 7LBU GLY A 27 UNP A0A2B7IY2 EXPRESSION TAG SEQADV 7LBU SER A 28 UNP A0A2B7IY2 EXPRESSION TAG SEQADV 7LBU HIS A 29 UNP A0A2B7IY2 EXPRESSION TAG SEQADV 7LBU MET A 30 UNP A0A2B7IY2 EXPRESSION TAG SEQRES 1 A 455 GLY SER HIS MET SER GLY ARG ALA PRO ALA PRO VAL ALA SEQRES 2 A 455 ALA THR THR GLN PRO LYS LEU VAL THR GLY ASP ILE THR SEQRES 3 A 455 SER THR ASP GLN SER GLY THR ASN LEU PHE PHE GLY LYS SEQRES 4 A 455 LYS ILE VAL ARG ASN ALA ARG GLY ALA ILE MET LYS VAL SEQRES 5 A 455 ASP ARG THR TRP PRO ALA ALA VAL PRO ALA PRO LEU PRO SEQRES 6 A 455 ASP VAL ARG ALA ASP SER SER THR ARG MET LEU LEU GLY SEQRES 7 A 455 PRO VAL VAL ASP LEU ALA VAL ASN GLU HIS PRO GLU GLY SEQRES 8 A 455 VAL PHE TYR ARG ILE PRO ALA LEU ALA THR ALA SER ASN SEQRES 9 A 455 GLY ASP LEU LEU ALA SER TYR ASP LEU ARG PRO GLY SER SEQRES 10 A 455 ALA GLY ASP ALA PRO ASN PRO ASN SER ILE VAL GLN ARG SEQRES 11 A 455 ARG SER ARG ASP ASN GLY ARG THR TRP GLY PRO GLN THR SEQRES 12 A 455 VAL ILE HIS ALA GLY THR PRO GLY ARG ARG LYS VAL GLY SEQRES 13 A 455 TYR SER ASP PRO SER TYR LEU VAL ASP PRO ALA THR GLY SEQRES 14 A 455 ARG ILE LEU ASN PHE HIS VAL LYS SER TYR ASP ARG GLY SEQRES 15 A 455 PHE ALA THR SER GLU VAL GLY THR ASP PRO ASP ASP ARG SEQRES 16 A 455 HIS VAL LEU HIS ALA GLU VAL SER THR SER THR ASP ASN SEQRES 17 A 455 GLY HIS THR TRP THR HIS ARG ASP ILE THR ARG GLU ILE SEQRES 18 A 455 THR SER ASP PRO THR THR ARG THR ARG PHE VAL ALA SER SEQRES 19 A 455 GLY GLN GLY ILE ALA LEU LEU HIS GLY PRO HIS ALA GLY SEQRES 20 A 455 ARG LEU ILE ALA GLN MET THR VAL ARG ASN SER VAL GLY SEQRES 21 A 455 GLN GLN ALA GLN SER ILE TYR SER ASP ASP HIS GLY ILE SEQRES 22 A 455 THR TRP HIS ALA GLY ASN PRO VAL GLY ARG MET MET ASP SEQRES 23 A 455 GLU ASN LYS VAL VAL GLU LEU SER ASP GLY THR LEU MET SEQRES 24 A 455 LEU ASN SER ARG ASP ALA ALA ARG SER GLY ARG ARG LYS SEQRES 25 A 455 VAL ALA TYR SER GLN ASP GLY GLY LEU THR TRP GLY PRO SEQRES 26 A 455 VAL LYS LEU VAL ASP ASP LEU ILE ASP PRO THR ASN ASN SEQRES 27 A 455 ALA GLN ILE ILE ARG ALA TYR PRO ASN ALA ARG ALA GLY SEQRES 28 A 455 SER ALA LYS ALA ARG ILE LEU LEU PHE THR ASN ALA ARG SEQRES 29 A 455 ASN ALA THR GLU ARG VAL ASN GLY THR LEU SER VAL SER SEQRES 30 A 455 CYS ASP ASP GLY ARG THR TRP VAL SER HIS GLN THR TYR SEQRES 31 A 455 MET PRO GLY GLU VAL GLY TYR THR THR ALA ALA VAL GLN SEQRES 32 A 455 SER ASP GLY ALA LEU GLY VAL LEU TRP GLU ARG ASP GLY SEQRES 33 A 455 ILE ARG TYR SER THR ILE PRO MET GLY TRP LEU ASN SER SEQRES 34 A 455 VAL CYS PRO LEU ALA PRO SER GLY ARG PRO THR SER GLY SEQRES 35 A 455 LYS PRO THR SER GLY THR SER LEU PRO PRO THR ALA THR HET PO4 A 601 5 HET ACT A 602 4 HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *165(H2 O) HELIX 1 AA1 HIS A 268 ALA A 272 5 5 HELIX 2 AA2 ALA A 379 ARG A 382 5 4 HELIX 3 AA3 MET A 450 VAL A 456 5 7 SHEET 1 AA1 4 VAL A 107 VAL A 111 0 SHEET 2 AA1 4 GLY A 442 ILE A 448 -1 O TYR A 445 N VAL A 107 SHEET 3 AA1 4 LEU A 434 GLU A 439 -1 N LEU A 434 O ILE A 448 SHEET 4 AA1 4 THR A 425 VAL A 428 -1 N ALA A 427 O GLY A 435 SHEET 1 AA2 4 VAL A 118 THR A 127 0 SHEET 2 AA2 4 LEU A 133 PRO A 141 -1 O ARG A 140 N PHE A 119 SHEET 3 AA2 4 SER A 152 SER A 158 -1 O SER A 158 N LEU A 133 SHEET 4 AA2 4 THR A 169 HIS A 172 -1 O HIS A 172 N ILE A 153 SHEET 1 AA3 5 THR A 239 ASP A 242 0 SHEET 2 AA3 5 HIS A 225 SER A 231 -1 N VAL A 228 O ARG A 241 SHEET 3 AA3 5 ILE A 197 SER A 204 -1 N ASN A 199 O SER A 229 SHEET 4 AA3 5 GLY A 182 VAL A 190 -1 N SER A 184 O VAL A 202 SHEET 5 AA3 5 GLY A 261 GLN A 262 1 O GLY A 261 N TYR A 188 SHEET 1 AA4 3 THR A 255 VAL A 258 0 SHEET 2 AA4 3 LEU A 275 ARG A 282 -1 O THR A 280 N PHE A 257 SHEET 3 AA4 3 ILE A 264 ALA A 265 -1 N ILE A 264 O ILE A 276 SHEET 1 AA5 4 THR A 255 VAL A 258 0 SHEET 2 AA5 4 LEU A 275 ARG A 282 -1 O THR A 280 N PHE A 257 SHEET 3 AA5 4 GLN A 287 SER A 294 -1 O GLN A 290 N MET A 279 SHEET 4 AA5 4 HIS A 302 ALA A 303 -1 O HIS A 302 N TYR A 293 SHEET 1 AA6 4 MET A 311 GLU A 318 0 SHEET 2 AA6 4 LEU A 324 ASP A 330 -1 O ASN A 327 N LYS A 315 SHEET 3 AA6 4 ARG A 336 SER A 342 -1 O ALA A 340 N LEU A 326 SHEET 4 AA6 4 LYS A 353 ILE A 359 -1 O LYS A 353 N VAL A 339 SHEET 1 AA7 4 GLN A 366 ARG A 369 0 SHEET 2 AA7 4 LEU A 384 ALA A 389 -1 O LEU A 385 N ILE A 368 SHEET 3 AA7 4 VAL A 396 SER A 403 -1 O SER A 401 N PHE A 386 SHEET 4 AA7 4 SER A 412 GLU A 420 -1 O GLN A 414 N LEU A 400 SSBOND 1 CYS A 404 CYS A 457 1555 1555 2.07 CISPEP 1 HIS A 114 PRO A 115 0 -0.58 CISPEP 2 ALA A 147 PRO A 148 0 11.70 CRYST1 43.973 46.847 49.600 116.51 98.94 91.69 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022741 0.000673 0.004368 0.00000 SCALE2 0.000000 0.021355 0.010962 0.00000 SCALE3 0.000000 0.000000 0.022941 0.00000