HEADER ONCOPROTEIN, HYDROLASE 09-JAN-21 7LC1 TITLE CRYSTAL STRUCTURE OF KRAS4B (GMPPNP-BOUND) IN COMPLEX WITH THE RBD-PH TITLE 2 DOMAINS OF SIN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2B OF GTPASE KRAS; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT MAPKAP1; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: TORC2 SUBUNIT MAPKAP1,MITOGEN-ACTIVATED PROTEIN KINASE 2- COMPND 12 ASSOCIATED PROTEIN 1,STRESS-ACTIVATED MAP KINASE-INTERACTING PROTEIN COMPND 13 1,MSIN1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MAPKAP1, MIP1, SIN1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KRAS, RAS, K-RAS, ONCOPROTEIN, GMPPNP, GPPNHP, SIN1, MAPKAP1, PH KEYWDS 2 DOMAIN, RBD, RAS-BINDING DOMAIN, EFFECTOR, SMALL GTPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DHARMAIAH,D.K.SIMANSHU REVDAT 3 18-OCT-23 7LC1 1 REMARK REVDAT 2 25-AUG-21 7LC1 1 JRNL REVDAT 1 04-AUG-21 7LC1 0 JRNL AUTH P.CASTEL,S.DHARMAIAH,M.J.SALE,S.MESSING,G.RIZZUTO, JRNL AUTH 2 A.CUEVAS-NAVARRO,A.CHENG,M.J.TRNKA,A.URISMAN,D.ESPOSITO, JRNL AUTH 3 D.K.SIMANSHU,F.MCCORMICK JRNL TITL RAS INTERACTION WITH SIN1 IS DISPENSABLE FOR MTORC2 ASSEMBLY JRNL TITL 2 AND ACTIVITY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 34380736 JRNL DOI 10.1073/PNAS.2103261118 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 32459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5400 - 5.6600 0.98 2221 155 0.1894 0.2052 REMARK 3 2 5.6600 - 4.4900 0.99 2202 150 0.1856 0.2475 REMARK 3 3 4.4900 - 3.9300 0.98 2132 145 0.1847 0.2800 REMARK 3 4 3.9300 - 3.5700 0.97 2141 143 0.2152 0.2752 REMARK 3 5 3.5700 - 3.3100 0.99 2204 140 0.2366 0.2927 REMARK 3 6 3.3100 - 3.1200 0.99 2192 138 0.2571 0.2984 REMARK 3 7 3.1200 - 2.9600 0.99 2188 145 0.2865 0.3095 REMARK 3 8 2.9600 - 2.8300 0.99 2174 146 0.3019 0.3499 REMARK 3 9 2.8300 - 2.7200 0.99 2168 137 0.3022 0.3590 REMARK 3 10 2.7200 - 2.6300 0.98 2142 141 0.3147 0.3310 REMARK 3 11 2.6300 - 2.5500 0.98 2155 143 0.3288 0.3414 REMARK 3 12 2.5500 - 2.4700 0.99 2183 144 0.3610 0.3893 REMARK 3 13 2.4700 - 2.4100 0.99 2168 138 0.3453 0.4356 REMARK 3 14 2.4100 - 2.3500 0.99 2184 140 0.3564 0.3525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 167) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6699 6.4358 -54.4036 REMARK 3 T TENSOR REMARK 3 T11: 0.2857 T22: 0.2623 REMARK 3 T33: 0.4054 T12: -0.0474 REMARK 3 T13: -0.0164 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 4.3932 L22: 4.1585 REMARK 3 L33: 2.8274 L12: -0.5904 REMARK 3 L13: 0.3593 L23: 0.3519 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.1524 S13: -0.0283 REMARK 3 S21: -0.3306 S22: 0.0580 S23: 0.2528 REMARK 3 S31: 0.0115 S32: -0.0775 S33: -0.0127 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 278 THROUGH 500) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8245 7.2362 -35.2338 REMARK 3 T TENSOR REMARK 3 T11: 0.2983 T22: 0.4212 REMARK 3 T33: 0.4018 T12: 0.0546 REMARK 3 T13: -0.0308 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 2.3705 L22: 3.1653 REMARK 3 L33: 0.8612 L12: 1.7749 REMARK 3 L13: -0.5907 L23: -0.7087 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: -0.1199 S13: -0.0684 REMARK 3 S21: 0.0677 S22: -0.0533 S23: -0.1719 REMARK 3 S31: -0.0731 S32: -0.0897 S33: 0.0837 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 0 THROUGH 166) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1307 -5.7467 -82.2090 REMARK 3 T TENSOR REMARK 3 T11: 0.5394 T22: 0.4122 REMARK 3 T33: 0.4001 T12: 0.0294 REMARK 3 T13: 0.1214 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 3.4359 L22: 3.3637 REMARK 3 L33: 5.9659 L12: 1.6272 REMARK 3 L13: 1.9546 L23: 0.6399 REMARK 3 S TENSOR REMARK 3 S11: 0.1150 S12: -0.0133 S13: -0.0450 REMARK 3 S21: 0.3296 S22: -0.1922 S23: 0.0046 REMARK 3 S31: 0.8884 S32: 0.1563 S33: 0.0815 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 277 THROUGH 496) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1680 1.8275 -99.9015 REMARK 3 T TENSOR REMARK 3 T11: 0.4892 T22: 0.7238 REMARK 3 T33: 0.6120 T12: -0.1245 REMARK 3 T13: -0.0160 T23: -0.0657 REMARK 3 L TENSOR REMARK 3 L11: 2.8852 L22: 2.2353 REMARK 3 L33: 1.1764 L12: -2.6790 REMARK 3 L13: -2.0109 L23: 1.4528 REMARK 3 S TENSOR REMARK 3 S11: -0.0824 S12: 0.3480 S13: -0.0506 REMARK 3 S21: 0.0728 S22: -0.0542 S23: -0.0732 REMARK 3 S31: -0.0675 S32: 0.0564 S33: 0.1664 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32468 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 48.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.380 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.44 REMARK 200 R MERGE FOR SHELL (I) : 0.85300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VOQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM SULFATE, 100 MM HEPES REMARK 280 (N-2-HYDROXYETHYL PIPERAZINE-N-ETHANE SULFONIC ACID) PH 7.5, 25% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.53500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 168 REMARK 465 LYS A 169 REMARK 465 GLY B 274 REMARK 465 SER B 275 REMARK 465 LYS B 276 REMARK 465 GLU B 277 REMARK 465 ASN B 416 REMARK 465 GLN B 417 REMARK 465 LYS B 418 REMARK 465 ALA B 419 REMARK 465 SER B 420 REMARK 465 LYS B 501 REMARK 465 GLN B 502 REMARK 465 ARG B 503 REMARK 465 LYS B 504 REMARK 465 LEU B 505 REMARK 465 ASN B 506 REMARK 465 ARG B 507 REMARK 465 ARG B 508 REMARK 465 THR B 509 REMARK 465 SER B 510 REMARK 465 LYS C 167 REMARK 465 GLU C 168 REMARK 465 LYS C 169 REMARK 465 GLY D 274 REMARK 465 SER D 275 REMARK 465 LYS D 276 REMARK 465 THR D 415 REMARK 465 ASN D 416 REMARK 465 GLN D 417 REMARK 465 LYS D 418 REMARK 465 ALA D 419 REMARK 465 SER D 420 REMARK 465 TYR D 497 REMARK 465 PHE D 498 REMARK 465 ALA D 499 REMARK 465 GLN D 500 REMARK 465 LYS D 501 REMARK 465 GLN D 502 REMARK 465 ARG D 503 REMARK 465 LYS D 504 REMARK 465 LEU D 505 REMARK 465 ASN D 506 REMARK 465 ARG D 507 REMARK 465 ARG D 508 REMARK 465 THR D 509 REMARK 465 SER D 510 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 GLN A 131 CG CD OE1 NE2 REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 165 CD CE NZ REMARK 470 LYS B 317 CG CD CE NZ REMARK 470 VAL B 318 CG1 CG2 REMARK 470 SER B 319 OG REMARK 470 ARG B 353 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 395 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 407 CG OD1 OD2 REMARK 470 THR B 415 OG1 CG2 REMARK 470 LYS B 426 CG CD CE NZ REMARK 470 LYS B 428 CG CD CE NZ REMARK 470 ASP B 435 CG OD1 OD2 REMARK 470 HIS B 461 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 462 CG OD1 OD2 REMARK 470 SER B 491 OG REMARK 470 THR B 492 OG1 CG2 REMARK 470 PHE B 498 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 500 CG CD OE1 NE2 REMARK 470 GLU C 49 CG CD OE1 OE2 REMARK 470 GLU C 62 CG CD OE1 OE2 REMARK 470 GLU C 63 CG CD OE1 OE2 REMARK 470 LYS C 101 CG CD CE NZ REMARK 470 ASP C 126 CG OD1 OD2 REMARK 470 LYS C 128 CG CD CE NZ REMARK 470 ARG C 161 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 277 CG CD OE1 OE2 REMARK 470 LYS D 310 CG CD CE NZ REMARK 470 LYS D 317 CG CD CE NZ REMARK 470 VAL D 318 CG1 CG2 REMARK 470 LEU D 337 CG CD1 CD2 REMARK 470 ASN D 355 CG OD1 ND2 REMARK 470 SER D 357 OG REMARK 470 ASP D 366 CG OD1 OD2 REMARK 470 GLN D 368 CG CD OE1 NE2 REMARK 470 GLN D 401 CG CD OE1 NE2 REMARK 470 ASP D 407 CG OD1 OD2 REMARK 470 GLU D 410 CG CD OE1 OE2 REMARK 470 LYS D 422 CG CD CE NZ REMARK 470 ILE D 425 CG1 CG2 CD1 REMARK 470 LYS D 426 CG CD CE NZ REMARK 470 GLN D 427 CG CD OE1 NE2 REMARK 470 LYS D 428 CG CD CE NZ REMARK 470 ASN D 460 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -63.98 -94.07 REMARK 500 SER B 319 177.63 77.21 REMARK 500 PHE B 363 -157.95 -91.16 REMARK 500 GLU B 364 61.93 66.43 REMARK 500 ALA B 490 -165.11 -163.66 REMARK 500 SER B 491 -7.31 79.81 REMARK 500 THR B 492 -31.35 -130.39 REMARK 500 GLU C 37 140.58 -176.02 REMARK 500 THR D 297 3.36 -67.18 REMARK 500 THR D 300 150.82 -49.06 REMARK 500 PHE D 363 -155.41 -91.03 REMARK 500 GLU D 364 37.87 76.32 REMARK 500 ARG D 393 14.67 55.48 REMARK 500 LYS D 422 -0.89 67.03 REMARK 500 LYS D 428 132.39 -39.92 REMARK 500 SER D 491 -5.20 75.08 REMARK 500 THR D 492 50.65 -93.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 87.9 REMARK 620 3 GNP A 202 O3G 174.9 87.3 REMARK 620 4 GNP A 202 O1B 88.0 167.6 96.4 REMARK 620 5 HOH A 304 O 94.1 82.5 83.7 86.1 REMARK 620 6 HOH A 307 O 93.5 96.0 88.6 95.9 172.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 17 OG REMARK 620 2 THR C 35 OG1 87.5 REMARK 620 3 GNP C 202 O1G 171.7 90.1 REMARK 620 4 GNP C 202 O1B 88.3 175.7 94.1 REMARK 620 5 HOH C 301 O 80.6 89.5 91.4 90.8 REMARK 620 6 HOH C 302 O 101.8 82.2 85.8 97.6 171.3 REMARK 620 N 1 2 3 4 5 DBREF 7LC1 A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 7LC1 B 275 510 UNP Q9BPZ7 SIN1_HUMAN 275 510 DBREF 7LC1 C 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 7LC1 D 275 510 UNP Q9BPZ7 SIN1_HUMAN 275 510 SEQADV 7LC1 GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 7LC1 ALA A 25 UNP P01116 GLN 25 ENGINEERED MUTATION SEQADV 7LC1 GLY B 274 UNP Q9BPZ7 EXPRESSION TAG SEQADV 7LC1 GLY C 0 UNP P01116 EXPRESSION TAG SEQADV 7LC1 ALA C 25 UNP P01116 GLN 25 ENGINEERED MUTATION SEQADV 7LC1 GLY D 274 UNP Q9BPZ7 EXPRESSION TAG SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE ALA SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS SEQRES 1 B 237 GLY SER LYS GLU SER LEU PHE VAL ARG ILE ASN ALA ALA SEQRES 2 B 237 HIS GLY PHE SER LEU ILE GLN VAL ASP ASN THR LYS VAL SEQRES 3 B 237 THR MET LYS GLU ILE LEU LEU LYS ALA VAL LYS ARG ARG SEQRES 4 B 237 LYS GLY SER GLN LYS VAL SER GLY PRO GLN TYR ARG LEU SEQRES 5 B 237 GLU LYS GLN SER GLU PRO ASN VAL ALA VAL ASP LEU ASP SEQRES 6 B 237 SER THR LEU GLU SER GLN SER ALA TRP GLU PHE CYS LEU SEQRES 7 B 237 VAL ARG GLU ASN SER SER ARG ALA ASP GLY VAL PHE GLU SEQRES 8 B 237 GLU ASP SER GLN ILE ASP ILE ALA THR VAL GLN ASP MET SEQRES 9 B 237 LEU SER SER HIS HIS TYR LYS SER PHE LYS VAL SER MET SEQRES 10 B 237 ILE HIS ARG LEU ARG PHE THR THR ASP VAL GLN LEU GLY SEQRES 11 B 237 ILE SER GLY ASP LYS VAL GLU ILE ASP PRO VAL THR ASN SEQRES 12 B 237 GLN LYS ALA SER THR LYS PHE TRP ILE LYS GLN LYS PRO SEQRES 13 B 237 ILE SER ILE ASP SER ASP LEU LEU CYS ALA CYS ASP LEU SEQRES 14 B 237 ALA GLU GLU LYS SER PRO SER HIS ALA ILE PHE LYS LEU SEQRES 15 B 237 THR TYR LEU SER ASN HIS ASP TYR LYS HIS LEU TYR PHE SEQRES 16 B 237 GLU SER ASP ALA ALA THR VAL ASN GLU ILE VAL LEU LYS SEQRES 17 B 237 VAL ASN TYR ILE LEU GLU SER ARG ALA SER THR ALA ARG SEQRES 18 B 237 ALA ASP TYR PHE ALA GLN LYS GLN ARG LYS LEU ASN ARG SEQRES 19 B 237 ARG THR SER SEQRES 1 C 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 C 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE ALA SEQRES 3 C 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 C 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 C 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 C 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 C 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 C 170 LYS SEQRES 1 D 237 GLY SER LYS GLU SER LEU PHE VAL ARG ILE ASN ALA ALA SEQRES 2 D 237 HIS GLY PHE SER LEU ILE GLN VAL ASP ASN THR LYS VAL SEQRES 3 D 237 THR MET LYS GLU ILE LEU LEU LYS ALA VAL LYS ARG ARG SEQRES 4 D 237 LYS GLY SER GLN LYS VAL SER GLY PRO GLN TYR ARG LEU SEQRES 5 D 237 GLU LYS GLN SER GLU PRO ASN VAL ALA VAL ASP LEU ASP SEQRES 6 D 237 SER THR LEU GLU SER GLN SER ALA TRP GLU PHE CYS LEU SEQRES 7 D 237 VAL ARG GLU ASN SER SER ARG ALA ASP GLY VAL PHE GLU SEQRES 8 D 237 GLU ASP SER GLN ILE ASP ILE ALA THR VAL GLN ASP MET SEQRES 9 D 237 LEU SER SER HIS HIS TYR LYS SER PHE LYS VAL SER MET SEQRES 10 D 237 ILE HIS ARG LEU ARG PHE THR THR ASP VAL GLN LEU GLY SEQRES 11 D 237 ILE SER GLY ASP LYS VAL GLU ILE ASP PRO VAL THR ASN SEQRES 12 D 237 GLN LYS ALA SER THR LYS PHE TRP ILE LYS GLN LYS PRO SEQRES 13 D 237 ILE SER ILE ASP SER ASP LEU LEU CYS ALA CYS ASP LEU SEQRES 14 D 237 ALA GLU GLU LYS SER PRO SER HIS ALA ILE PHE LYS LEU SEQRES 15 D 237 THR TYR LEU SER ASN HIS ASP TYR LYS HIS LEU TYR PHE SEQRES 16 D 237 GLU SER ASP ALA ALA THR VAL ASN GLU ILE VAL LEU LYS SEQRES 17 D 237 VAL ASN TYR ILE LEU GLU SER ARG ALA SER THR ALA ARG SEQRES 18 D 237 ALA ASP TYR PHE ALA GLN LYS GLN ARG LYS LEU ASN ARG SEQRES 19 D 237 ARG THR SER HET MG A 201 1 HET GNP A 202 32 HET MG C 201 1 HET GNP C 202 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 5 MG 2(MG 2+) FORMUL 6 GNP 2(C10 H17 N6 O13 P3) FORMUL 9 HOH *42(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 ALA A 66 5 6 HELIX 3 AA3 MET A 67 GLY A 75 1 9 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 LYS A 104 1 13 HELIX 6 AA6 ASP A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 LYS A 167 1 17 HELIX 8 AA8 THR B 300 GLY B 314 1 15 HELIX 9 AA9 SER B 357 GLY B 361 5 5 HELIX 10 AB1 ASP B 370 SER B 379 1 10 HELIX 11 AB2 ASP B 471 GLU B 487 1 17 HELIX 12 AB3 THR B 492 GLN B 500 1 9 HELIX 13 AB4 GLY C 15 ASN C 26 1 12 HELIX 14 AB5 GLN C 61 ALA C 66 5 6 HELIX 15 AB6 MET C 67 GLY C 75 1 9 HELIX 16 AB7 ASN C 86 LYS C 104 1 19 HELIX 17 AB8 ASP C 126 GLY C 138 1 13 HELIX 18 AB9 GLY C 151 LYS C 165 1 15 HELIX 19 AC1 THR D 300 GLY D 314 1 15 HELIX 20 AC2 ASP D 370 SER D 379 1 10 HELIX 21 AC3 ASP D 471 SER D 488 1 18 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 7 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 GLY B 288 VAL B 294 0 SHEET 2 AA2 4 LEU B 279 ALA B 285 -1 N ALA B 285 O GLY B 288 SHEET 3 AA2 4 GLU B 348 ARG B 353 1 O LEU B 351 N ASN B 284 SHEET 4 AA2 4 TYR B 323 LYS B 327 -1 N GLU B 326 O CYS B 350 SHEET 1 AA3 7 ILE B 430 ASP B 433 0 SHEET 2 AA3 7 LYS B 408 PRO B 413 -1 N ILE B 411 O ILE B 430 SHEET 3 AA3 7 PHE B 396 ILE B 404 -1 N GLN B 401 O ASP B 412 SHEET 4 AA3 7 LYS B 384 HIS B 392 -1 N PHE B 386 O LEU B 402 SHEET 5 AA3 7 TYR B 463 SER B 470 -1 O GLU B 469 N SER B 389 SHEET 6 AA3 7 HIS B 450 LEU B 458 -1 N LEU B 455 O LEU B 466 SHEET 7 AA3 7 LEU B 437 SER B 447 -1 N GLU B 444 O ILE B 452 SHEET 1 AA410 PHE C 141 GLU C 143 0 SHEET 2 AA410 MET C 111 ASN C 116 1 N LEU C 113 O ILE C 142 SHEET 3 AA410 GLY C 77 ALA C 83 1 N PHE C 82 O ASN C 116 SHEET 4 AA410 GLU C 3 GLY C 10 1 N VAL C 7 O LEU C 79 SHEET 5 AA410 GLU C 49 THR C 58 1 O ASP C 54 N LEU C 6 SHEET 6 AA410 GLU C 37 ILE C 46 -1 N ASP C 38 O ASP C 57 SHEET 7 AA410 GLY D 288 VAL D 294 -1 O PHE D 289 N SER C 39 SHEET 8 AA410 LEU D 279 ALA D 285 -1 N LEU D 279 O VAL D 294 SHEET 9 AA410 GLU D 348 ARG D 353 1 O LEU D 351 N ASN D 284 SHEET 10 AA410 TYR D 323 LYS D 327 -1 N GLU D 326 O CYS D 350 SHEET 1 AA5 7 ILE D 430 ASP D 433 0 SHEET 2 AA5 7 LYS D 408 PRO D 413 -1 N VAL D 409 O ILE D 432 SHEET 3 AA5 7 PHE D 396 ILE D 404 -1 N GLN D 401 O ASP D 412 SHEET 4 AA5 7 LYS D 384 HIS D 392 -1 N LYS D 384 O ILE D 404 SHEET 5 AA5 7 TYR D 463 SER D 470 -1 O TYR D 467 N ILE D 391 SHEET 6 AA5 7 HIS D 450 LEU D 458 -1 N LEU D 455 O LEU D 466 SHEET 7 AA5 7 LEU D 437 SER D 447 -1 N ASP D 441 O LYS D 454 LINK OG SER A 17 MG MG A 201 1555 1555 1.72 LINK OG1 THR A 35 MG MG A 201 1555 1555 1.77 LINK MG MG A 201 O3G GNP A 202 1555 1555 1.97 LINK MG MG A 201 O1B GNP A 202 1555 1555 2.03 LINK MG MG A 201 O HOH A 304 1555 1555 2.05 LINK MG MG A 201 O HOH A 307 1555 1555 2.02 LINK OG SER C 17 MG MG C 201 1555 1555 1.77 LINK OG1 THR C 35 MG MG C 201 1555 1555 1.80 LINK MG MG C 201 O1G GNP C 202 1555 1555 2.17 LINK MG MG C 201 O1B GNP C 202 1555 1555 2.02 LINK MG MG C 201 O HOH C 301 1555 1555 2.02 LINK MG MG C 201 O HOH C 302 1555 1555 2.01 CRYST1 42.760 97.070 96.620 90.00 92.32 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023386 0.000000 0.000949 0.00000 SCALE2 0.000000 0.010302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010358 0.00000