HEADER IMMUNE SYSTEM 17-JAN-21 7LFL TITLE MODEL OF MHC CLASS IB H2-M3 WITH MOUSE ND1 N-TERMINAL HEPTAPEPTIDE, TITLE 2 VAL MUTANT, MONOCLINIC CELL, REFINED AT 1.60 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTOCOMPATIBILITY 2, M REGION LOCUS 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MHC CLASS IB ANTIGEN H2-M3, MHC CLASS I ANTIGEN H-2M3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HEPTAPEPTIDE FROM NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: FIRST SEVEN AMINO-TERMINAL RESIDUES; COMPND 15 SYNONYM: NADH DEHYDROGENASE SUBUNIT 1; COMPND 16 EC: 7.1.1.2; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 OTHER_DETAILS: THE N-TERMINAL METHIONINE IS N-FORMYLMETHIONINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-M3, H-2M3; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRMHA-3; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: B2M; SOURCE 15 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PRMHA-3; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 22 ORGANISM_COMMON: MOUSE; SOURCE 23 ORGANISM_TAXID: 10090 KEYWDS HISTOCOMPATIBILITY ANTIGEN/PEPTIDE, HISTOCOMPATIBILITY ANTIGEN- KEYWDS 2 PEPTIDE COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.R.TOMCHICK,J.DEISENHOFER,S.SHEN REVDAT 2 28-DEC-22 7LFL 1 JRNL REVDAT 1 14-JUL-21 7LFL 0 JRNL AUTH A.STRAND,S.T.SHEN,D.R.TOMCHICK,J.WANG,C.R.WANG,J.DEISENHOFER JRNL TITL STRUCTURE AND DYNAMICS OF MAJOR HISTOCOMPATIBILITY CLASS IB JRNL TITL 2 MOLECULE H2-M3 COMPLEXED WITH MITOCHONDRIAL-DERIVED JRNL TITL 3 PEPTIDES. JRNL REF J.BIOMOL.STRUCT.DYN. V. 40 10300 2022 JRNL REFN ESSN 1538-0254 JRNL PMID 34176438 JRNL DOI 10.1080/07391102.2021.1942214 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.R.WANG,A.R.CASTANO,P.A.PETERSON,C.SLAUGHTER,K.F.LINDAHL, REMARK 1 AUTH 2 J.DEISENHOFER REMARK 1 TITL NONCLASSICAL BINDING OF FORMYLATED PEPTIDE IN CRYSTAL REMARK 1 TITL 2 STRUCTURE OF THE MHC CLASS IB MOLECULE H2-M3 REMARK 1 REF CELL V. 82 655 1995 REMARK 1 PMID 7664344 REMARK 1 DOI 10.1016/0092-8674(95)90037-3 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.R.WANG,B.E.LOVELAND,K.F.LINDAHL REMARK 1 TITL H2-M3 ENCODES THE MHC CLASS I MOLECULE PRESENTING THE REMARK 1 TITL 2 MATERNALLY TRANSMITTED ANTIGEN OF THE MOUSE REMARK 1 REF CELL V. 66 335 1991 REMARK 1 PMID 1855254 REMARK 1 DOI 10.1016/0092-8674(91)90623-7 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2-3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 48328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.010 REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.6500 - 3.0600 0.92 6633 139 0.1908 0.2298 REMARK 3 2 3.0600 - 2.4300 1.00 7115 145 0.2023 0.2341 REMARK 3 3 2.4300 - 2.1200 1.00 7090 141 0.1882 0.2248 REMARK 3 4 2.1200 - 1.9300 1.00 7075 150 0.1901 0.2484 REMARK 3 5 1.9300 - 1.7900 1.00 7052 142 0.2204 0.2522 REMARK 3 6 1.7900 - 1.6800 0.96 6766 132 0.2424 0.3109 REMARK 3 7 1.6800 - 1.6000 0.80 5624 124 0.2800 0.2815 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.188 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.446 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3209 REMARK 3 ANGLE : 0.690 4354 REMARK 3 CHIRALITY : 0.047 455 REMARK 3 PLANARITY : 0.004 565 REMARK 3 DIHEDRAL : 16.501 1201 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6351 -9.0984 21.3152 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.1333 REMARK 3 T33: 0.1718 T12: -0.0366 REMARK 3 T13: 0.0187 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 5.2681 L22: 1.9076 REMARK 3 L33: 4.9268 L12: 0.2396 REMARK 3 L13: 1.8171 L23: -0.3354 REMARK 3 S TENSOR REMARK 3 S11: 0.1705 S12: -0.1516 S13: -0.4253 REMARK 3 S21: -0.1301 S22: -0.1223 S23: 0.0065 REMARK 3 S31: 0.4313 S32: 0.0157 S33: -0.0680 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2270 -7.4697 22.4539 REMARK 3 T TENSOR REMARK 3 T11: 0.1812 T22: 0.2724 REMARK 3 T33: 0.2711 T12: -0.0661 REMARK 3 T13: 0.0213 T23: -0.0864 REMARK 3 L TENSOR REMARK 3 L11: 8.1788 L22: 8.4296 REMARK 3 L33: 8.1944 L12: -6.0128 REMARK 3 L13: 6.5283 L23: -6.2117 REMARK 3 S TENSOR REMARK 3 S11: 0.1773 S12: -0.3813 S13: -0.4223 REMARK 3 S21: -0.1783 S22: 0.0153 S23: 0.7107 REMARK 3 S31: 0.2153 S32: -0.5757 S33: -0.3992 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7402 7.1200 23.1366 REMARK 3 T TENSOR REMARK 3 T11: 0.2435 T22: 0.2279 REMARK 3 T33: 0.3927 T12: -0.0478 REMARK 3 T13: -0.0234 T23: -0.1079 REMARK 3 L TENSOR REMARK 3 L11: 2.4805 L22: 2.1081 REMARK 3 L33: 4.0625 L12: -0.5699 REMARK 3 L13: 1.1557 L23: -0.7604 REMARK 3 S TENSOR REMARK 3 S11: -0.1376 S12: -0.1064 S13: 0.7395 REMARK 3 S21: 0.0413 S22: -0.2540 S23: 0.3394 REMARK 3 S31: -0.5185 S32: 0.0570 S33: 0.3122 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8973 8.4579 29.8379 REMARK 3 T TENSOR REMARK 3 T11: 0.2937 T22: 0.4157 REMARK 3 T33: 0.5333 T12: -0.0262 REMARK 3 T13: 0.0326 T23: -0.2495 REMARK 3 L TENSOR REMARK 3 L11: 4.1048 L22: 3.5574 REMARK 3 L33: 4.3746 L12: -1.6390 REMARK 3 L13: 1.6252 L23: -0.9450 REMARK 3 S TENSOR REMARK 3 S11: -0.1557 S12: -0.5646 S13: 0.8455 REMARK 3 S21: 0.2224 S22: -0.1584 S23: 0.3500 REMARK 3 S31: -0.4300 S32: -0.5482 S33: 0.3122 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7588 4.2874 18.7018 REMARK 3 T TENSOR REMARK 3 T11: 0.1541 T22: 0.0986 REMARK 3 T33: 0.1368 T12: -0.0059 REMARK 3 T13: -0.0301 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 4.5763 L22: 1.7409 REMARK 3 L33: 3.2079 L12: 1.4964 REMARK 3 L13: -1.9123 L23: -0.7300 REMARK 3 S TENSOR REMARK 3 S11: 0.0620 S12: -0.1504 S13: 0.1618 REMARK 3 S21: -0.0589 S22: -0.0497 S23: -0.0145 REMARK 3 S31: -0.0158 S32: 0.0659 S33: 0.0642 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2479 10.5719 15.5467 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.1253 REMARK 3 T33: 0.1941 T12: 0.0047 REMARK 3 T13: 0.0072 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 4.9658 L22: 2.5880 REMARK 3 L33: 4.9284 L12: 1.8366 REMARK 3 L13: -0.2293 L23: -0.2714 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: -0.0533 S13: 0.3771 REMARK 3 S21: -0.0766 S22: -0.0068 S23: -0.1105 REMARK 3 S31: -0.3076 S32: 0.5338 S33: 0.0380 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2014 0.9621 5.1463 REMARK 3 T TENSOR REMARK 3 T11: 0.3157 T22: 0.3000 REMARK 3 T33: 0.2397 T12: -0.0810 REMARK 3 T13: 0.0080 T23: 0.0787 REMARK 3 L TENSOR REMARK 3 L11: 2.0105 L22: 4.8597 REMARK 3 L33: 9.1288 L12: 0.7168 REMARK 3 L13: 3.9048 L23: -1.2502 REMARK 3 S TENSOR REMARK 3 S11: -0.5062 S12: 0.5455 S13: 0.2715 REMARK 3 S21: -0.0729 S22: 0.6128 S23: 0.3411 REMARK 3 S31: -0.7959 S32: -0.4454 S33: 0.0259 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8660 -10.1095 8.9944 REMARK 3 T TENSOR REMARK 3 T11: 0.3555 T22: 0.3535 REMARK 3 T33: 0.5918 T12: 0.0939 REMARK 3 T13: -0.0113 T23: -0.0750 REMARK 3 L TENSOR REMARK 3 L11: 0.3474 L22: 6.4811 REMARK 3 L33: 6.9394 L12: -1.4668 REMARK 3 L13: -0.9382 L23: 5.0330 REMARK 3 S TENSOR REMARK 3 S11: -0.2775 S12: -0.6706 S13: -1.2583 REMARK 3 S21: 0.7072 S22: 0.5071 S23: -1.2581 REMARK 3 S31: 1.3472 S32: 1.6324 S33: -0.1597 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1441 -4.5982 8.1197 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.1883 REMARK 3 T33: 0.2208 T12: -0.0733 REMARK 3 T13: 0.0198 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 3.1764 L22: 5.7149 REMARK 3 L33: 4.1390 L12: -4.0150 REMARK 3 L13: 1.5192 L23: -2.0488 REMARK 3 S TENSOR REMARK 3 S11: 0.1266 S12: 0.4520 S13: -0.1580 REMARK 3 S21: -0.4342 S22: -0.1273 S23: -0.0842 REMARK 3 S31: 0.1151 S32: 0.0212 S33: 0.0062 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5738 -6.6501 2.1056 REMARK 3 T TENSOR REMARK 3 T11: 0.2817 T22: 0.3072 REMARK 3 T33: 0.2163 T12: -0.1040 REMARK 3 T13: -0.0096 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 2.5812 L22: 9.4218 REMARK 3 L33: 9.3510 L12: -4.4722 REMARK 3 L13: -4.6117 L23: 7.0799 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: 0.6100 S13: -0.0414 REMARK 3 S21: -0.4850 S22: 0.0551 S23: -0.0260 REMARK 3 S31: -0.0735 S32: -0.4122 S33: 0.3197 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1416 -14.4077 -5.1806 REMARK 3 T TENSOR REMARK 3 T11: 0.4729 T22: 0.4765 REMARK 3 T33: 0.3413 T12: -0.0731 REMARK 3 T13: -0.0224 T23: -0.2163 REMARK 3 L TENSOR REMARK 3 L11: 4.5946 L22: 6.2607 REMARK 3 L33: 7.3473 L12: -1.0131 REMARK 3 L13: -3.3845 L23: -4.6667 REMARK 3 S TENSOR REMARK 3 S11: 0.1722 S12: 0.9276 S13: -0.5524 REMARK 3 S21: -1.1796 S22: 0.4374 S23: -0.0286 REMARK 3 S31: 0.5757 S32: -0.3178 S33: 0.1689 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4228 -15.7264 5.9984 REMARK 3 T TENSOR REMARK 3 T11: 0.4140 T22: 0.2930 REMARK 3 T33: 0.4837 T12: -0.1020 REMARK 3 T13: 0.0442 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 4.2619 L22: 5.8057 REMARK 3 L33: 4.7015 L12: -3.5115 REMARK 3 L13: -0.4696 L23: 4.0538 REMARK 3 S TENSOR REMARK 3 S11: -0.2772 S12: 0.1408 S13: -1.3091 REMARK 3 S21: -0.3165 S22: 0.3225 S23: 0.1551 REMARK 3 S31: 0.6393 S32: 0.2568 S33: -0.3116 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2684 -5.6282 8.7885 REMARK 3 T TENSOR REMARK 3 T11: 0.2087 T22: 0.1465 REMARK 3 T33: 0.1632 T12: -0.0619 REMARK 3 T13: -0.0098 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 8.7253 L22: 3.6691 REMARK 3 L33: 3.0307 L12: -3.4209 REMARK 3 L13: -2.6694 L23: 1.3865 REMARK 3 S TENSOR REMARK 3 S11: -0.2278 S12: 0.0364 S13: 0.0376 REMARK 3 S21: -0.0411 S22: 0.2296 S23: -0.3535 REMARK 3 S31: 0.2441 S32: 0.1341 S33: -0.1044 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5487 -3.0119 -2.9306 REMARK 3 T TENSOR REMARK 3 T11: 0.3752 T22: 0.5080 REMARK 3 T33: 0.2144 T12: -0.0964 REMARK 3 T13: -0.0396 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 3.5344 L22: 3.0553 REMARK 3 L33: 3.6497 L12: -2.1039 REMARK 3 L13: 3.3032 L23: -2.6331 REMARK 3 S TENSOR REMARK 3 S11: 0.0442 S12: 0.9843 S13: -0.3733 REMARK 3 S21: -0.6689 S22: 0.2720 S23: 0.3862 REMARK 3 S31: 0.1745 S32: -0.3824 S33: -0.1174 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1467 -1.8234 -0.1169 REMARK 3 T TENSOR REMARK 3 T11: 0.3585 T22: 0.3032 REMARK 3 T33: 0.1879 T12: -0.0982 REMARK 3 T13: 0.1091 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 3.2932 L22: 4.3500 REMARK 3 L33: 7.7653 L12: 2.4720 REMARK 3 L13: 3.6784 L23: -0.0832 REMARK 3 S TENSOR REMARK 3 S11: -0.4681 S12: 0.7543 S13: -0.2808 REMARK 3 S21: -0.5430 S22: 0.6849 S23: -0.2359 REMARK 3 S31: -0.1092 S32: 0.5545 S33: -0.1197 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2396 0.7355 25.1342 REMARK 3 T TENSOR REMARK 3 T11: 0.2104 T22: 0.3758 REMARK 3 T33: 0.2249 T12: -0.0318 REMARK 3 T13: 0.0767 T23: -0.1280 REMARK 3 L TENSOR REMARK 3 L11: 7.8070 L22: 7.6559 REMARK 3 L33: 1.8730 L12: -2.4862 REMARK 3 L13: 3.8040 L23: -1.0382 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.2120 S13: 0.6927 REMARK 3 S21: -0.1259 S22: -0.2300 S23: 0.7206 REMARK 3 S31: -0.3961 S32: -0.4592 S33: -0.0505 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LFL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000253733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48328 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 22.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.67700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 20% (W/V) PEG 4000, 30% REMARK 280 (V/V) ETHYLENE GLYCOL, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.00450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.00450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 ILE B 1 REMARK 465 GLN B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -126.47 52.43 REMARK 500 SER A 131 -24.43 -149.38 REMARK 500 GLN A 180 57.68 -97.81 REMARK 500 ASP A 220 -99.54 54.69 REMARK 500 TRP B 60 -4.58 78.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 7LFL A 1 276 UNP Q31093 Q31093_MOUSE 25 301 DBREF 7LFL B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 7LFL C 1 7 UNP P03888 NU1M_MOUSE 1 7 SEQADV 7LFL A UNP Q31093 GLY 299 DELETION SEQADV 7LFL HIS A 277 UNP Q31093 EXPRESSION TAG SEQADV 7LFL HIS A 278 UNP Q31093 EXPRESSION TAG SEQADV 7LFL HIS A 279 UNP Q31093 EXPRESSION TAG SEQADV 7LFL HIS A 280 UNP Q31093 EXPRESSION TAG SEQADV 7LFL HIS A 281 UNP Q31093 EXPRESSION TAG SEQADV 7LFL HIS A 282 UNP Q31093 EXPRESSION TAG SEQADV 7LFL ASP B 85 UNP P01887 ALA 105 VARIANT SEQADV 7LFL VAL C 6 UNP P03888 ILE 6 ENGINEERED MUTATION SEQRES 1 A 282 GLY SER HIS SER LEU ARG TYR PHE HIS THR ALA VAL SER SEQRES 2 A 282 ARG PRO GLY ARG GLY GLU PRO GLN TYR ILE SER VAL GLY SEQRES 3 A 282 TYR VAL ASP ASP VAL GLN PHE GLN ARG CYS ASP SER ILE SEQRES 4 A 282 GLU GLU ILE PRO ARG MET GLU PRO ARG ALA PRO TRP MET SEQRES 5 A 282 GLU LYS GLU ARG PRO GLU TYR TRP LYS GLU LEU LYS LEU SEQRES 6 A 282 LYS VAL LYS ASN ILE ALA GLN SER ALA ARG ALA ASN LEU SEQRES 7 A 282 ARG THR LEU LEU ARG TYR TYR ASN GLN SER GLU GLY GLY SEQRES 8 A 282 SER HIS ILE LEU GLN TRP MET VAL SER CYS GLU VAL GLY SEQRES 9 A 282 PRO ASP MET ARG LEU LEU GLY ALA HIS TYR GLN ALA ALA SEQRES 10 A 282 TYR ASP GLY SER ASP TYR ILE THR LEU ASN GLU ASP LEU SEQRES 11 A 282 SER SER TRP THR ALA VAL ASP MET VAL SER GLN ILE THR SEQRES 12 A 282 LYS SER ARG LEU GLU SER ALA GLY THR ALA GLU TYR PHE SEQRES 13 A 282 ARG ALA TYR VAL GLU GLY GLU CYS LEU GLU LEU LEU HIS SEQRES 14 A 282 ARG PHE LEU ARG ASN GLY LYS GLU ILE LEU GLN ARG ALA SEQRES 15 A 282 ASP PRO PRO LYS ALA HIS VAL ALA HIS HIS PRO ARG PRO SEQRES 16 A 282 LYS GLY ASP VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 282 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LYS ASP GLU SEQRES 18 A 282 GLU ASP LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 282 PRO SER GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 282 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS TYR SEQRES 21 A 282 VAL HIS HIS GLU GLY LEU THR GLU PRO LEU ALA LEU LYS SEQRES 22 A 282 TRP ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 7 FME PHE PHE ILE ASN VAL LEU MODRES 7LFL FME C 1 MET MODIFIED RESIDUE HET FME C 1 20 HET NAG A2001 27 HETNAM FME N-FORMYLMETHIONINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 FME C6 H11 N O3 S FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *190(H2 O) HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 ARG A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 GLY A 151 1 15 HELIX 4 AA4 THR A 152 GLY A 162 1 11 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 THR A 225 MET A 228 5 4 HELIX 8 AA8 GLU A 253 GLN A 255 5 3 SHEET 1 AA1 8 ILE A 42 PRO A 47 0 SHEET 2 AA1 8 VAL A 31 ILE A 39 -1 N ASP A 37 O ARG A 44 SHEET 3 AA1 8 TYR A 22 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 ILE A 94 VAL A 103 -1 O VAL A 99 N TYR A 7 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N GLU A 102 SHEET 7 AA1 8 SER A 121 LEU A 126 -1 O ILE A 124 N ALA A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N THR A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 VAL A 199 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 VAL A 249 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 VAL A 199 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 VAL A 249 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 LYS A 219 -1 N LYS A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 HIS A 262 -1 O TYR A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 GLN B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 AA5 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 AA6 4 GLN B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 LYS B 44 LYS B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 AA7 4 TYR B 78 LYS B 83 -1 O ARG B 81 N GLN B 38 SHEET 4 AA7 4 LYS B 91 TYR B 94 -1 O LYS B 91 N VAL B 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 LINK ND2 ASN A 86 C1 NAG A2001 1555 1555 1.45 LINK C FME C 1 N PHE C 2 1555 1555 1.33 CISPEP 1 TYR A 209 PRO A 210 0 -0.77 CISPEP 2 HIS B 31 PRO B 32 0 3.42 CRYST1 116.376 66.009 55.216 90.00 113.33 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008593 0.000000 0.003707 0.00000 SCALE2 0.000000 0.015149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019724 0.00000