HEADER HYDROLASE 19-JAN-21 7LG7 TITLE CRYSTAL STRUCTURE OF COV-2 NSP3 MACRODOMAIN COMPLEX WITH PARG345 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MACRODOMAIN; COMPND 5 SYNONYM: NSP3, PL2-PRO, PAPAIN-LIKE PROTEASE, PAPAIN-LIKE PROTEINASE, COMPND 6 PL-PRO; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 KEYWDS HYDROLASE, SARS-COV-2, MACRODOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR A.ARVAI,C.A.BROSEY,S.BOMMAGANI,T.LINK,D.E.JONES,Z.AHMED,J.A.TAINER REVDAT 4 18-OCT-23 7LG7 1 REMARK REVDAT 3 16-JUN-21 7LG7 1 JRNL REVDAT 2 10-MAR-21 7LG7 1 JRNL REVDAT 1 17-FEB-21 7LG7 0 JRNL AUTH C.A.BROSEY,J.H.HOUL,P.KATSONIS,L.P.F.BALAPITI-MODARAGE, JRNL AUTH 2 S.BOMMAGANI,A.ARVAI,D.MOIANI,A.BACOLLA,T.LINK,L.S.WARDEN, JRNL AUTH 3 O.LICHTARGE,D.E.JONES,Z.AHMED,J.A.TAINER JRNL TITL TARGETING SARS-COV-2 NSP3 MACRODOMAIN STRUCTURE WITH JRNL TITL 2 INSIGHTS FROM HUMAN POLY(ADP-RIBOSE) GLYCOHYDROLASE (PARG) JRNL TITL 3 STRUCTURES WITH INHIBITORS. JRNL REF PROG.BIOPHYS.MOL.BIOL. V. 163 171 2021 JRNL REFN ISSN 0079-6107 JRNL PMID 33636189 JRNL DOI 10.1016/J.PBIOMOLBIO.2021.02.002 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 12690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3400 - 3.9300 1.00 2714 146 0.1375 0.1453 REMARK 3 2 3.9300 - 3.1200 0.98 2585 136 0.1650 0.2022 REMARK 3 3 3.1200 - 2.7300 0.94 2471 123 0.2312 0.2731 REMARK 3 4 2.7300 - 2.4800 0.87 2258 118 0.2780 0.3329 REMARK 3 5 2.4800 - 2.3000 0.78 2032 107 0.3212 0.4342 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.20 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0330 -28.6591 22.3098 REMARK 3 T TENSOR REMARK 3 T11: 0.4959 T22: 0.5279 REMARK 3 T33: 0.5238 T12: 0.0093 REMARK 3 T13: 0.0471 T23: -0.0998 REMARK 3 L TENSOR REMARK 3 L11: 5.0199 L22: 2.9232 REMARK 3 L33: 2.7481 L12: 0.5028 REMARK 3 L13: 0.7315 L23: 1.7619 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.7451 S13: 0.7081 REMARK 3 S21: 0.5447 S22: -0.1783 S23: 0.2443 REMARK 3 S31: -0.1704 S32: -0.4524 S33: 0.1599 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8681 -32.8727 16.5732 REMARK 3 T TENSOR REMARK 3 T11: 0.4163 T22: 0.4614 REMARK 3 T33: 0.5027 T12: -0.1068 REMARK 3 T13: 0.0212 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 6.4231 L22: 7.8064 REMARK 3 L33: 3.9189 L12: 2.5288 REMARK 3 L13: 2.8147 L23: 5.3756 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: -0.4527 S13: 0.2661 REMARK 3 S21: 0.2251 S22: -0.1144 S23: -0.3640 REMARK 3 S31: -0.4624 S32: -0.1756 S33: -0.0084 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9785 -35.4282 4.6583 REMARK 3 T TENSOR REMARK 3 T11: 0.3357 T22: 0.3510 REMARK 3 T33: 0.4289 T12: 0.0301 REMARK 3 T13: 0.0410 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 3.9819 L22: 5.5436 REMARK 3 L33: 3.3315 L12: 0.0744 REMARK 3 L13: -0.9565 L23: 0.3945 REMARK 3 S TENSOR REMARK 3 S11: -0.1936 S12: 0.1569 S13: -0.1688 REMARK 3 S21: 0.0528 S22: -0.0766 S23: -0.5481 REMARK 3 S31: 0.1395 S32: 0.2408 S33: 0.2262 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1220 -41.5494 10.7019 REMARK 3 T TENSOR REMARK 3 T11: 0.3408 T22: 0.3936 REMARK 3 T33: 0.3660 T12: -0.0099 REMARK 3 T13: 0.0200 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 4.3558 L22: 6.4640 REMARK 3 L33: 1.1237 L12: 2.3676 REMARK 3 L13: 0.0932 L23: -0.0615 REMARK 3 S TENSOR REMARK 3 S11: 0.0501 S12: -0.1529 S13: -0.5800 REMARK 3 S21: 0.4902 S22: -0.0430 S23: -0.7791 REMARK 3 S31: 0.1633 S32: 0.0535 S33: -0.0225 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9960 -47.7815 18.3566 REMARK 3 T TENSOR REMARK 3 T11: 0.5237 T22: 0.5458 REMARK 3 T33: 0.5027 T12: -0.0934 REMARK 3 T13: -0.0274 T23: 0.2089 REMARK 3 L TENSOR REMARK 3 L11: 2.3917 L22: 0.9028 REMARK 3 L33: 6.1760 L12: -1.0229 REMARK 3 L13: 2.4885 L23: 0.2282 REMARK 3 S TENSOR REMARK 3 S11: 0.4785 S12: -0.9130 S13: -0.5994 REMARK 3 S21: 0.9290 S22: -0.4592 S23: -0.5236 REMARK 3 S31: 0.5003 S32: -0.2646 S33: -0.0134 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9541 -40.2577 17.8752 REMARK 3 T TENSOR REMARK 3 T11: 0.3842 T22: 0.5209 REMARK 3 T33: 0.3152 T12: -0.0444 REMARK 3 T13: 0.0431 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 3.4002 L22: 3.8369 REMARK 3 L33: 2.9491 L12: 1.0227 REMARK 3 L13: 0.6705 L23: 0.8013 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: -0.5678 S13: 0.0744 REMARK 3 S21: 0.4527 S22: -0.2795 S23: 0.1375 REMARK 3 S31: 0.0590 S32: -0.2999 S33: 0.1792 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7942 -34.6207 16.1278 REMARK 3 T TENSOR REMARK 3 T11: 0.4352 T22: 0.8120 REMARK 3 T33: 0.7383 T12: -0.0568 REMARK 3 T13: 0.0934 T23: -0.2047 REMARK 3 L TENSOR REMARK 3 L11: 2.5662 L22: 2.9443 REMARK 3 L33: 9.6290 L12: -2.5488 REMARK 3 L13: -1.1105 L23: 3.0043 REMARK 3 S TENSOR REMARK 3 S11: 0.2804 S12: -0.8075 S13: -0.1636 REMARK 3 S21: 0.3112 S22: -0.5072 S23: 2.1556 REMARK 3 S31: 0.1454 S32: -1.0961 S33: 0.0373 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) AND SI(220) DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13824 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 38.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.13710 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 2.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6W02 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% ASO4,0.4% BME,50 MM MES 6.0,200 MM REMARK 280 IMIDAZOLE /MALATE 8.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 13.88633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.77267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.77267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 13.88633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 168 REMARK 465 LEU A 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 86 -131.72 56.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XYJ A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KG3 RELATED DB: PDB REMARK 900 RELATED ID: 7KXB RELATED DB: PDB REMARK 900 RELATED ID: 7KG1 RELATED DB: PDB REMARK 900 RELATED ID: 7KG8 RELATED DB: PDB REMARK 900 RELATED ID: 7KFP RELATED DB: PDB REMARK 900 RELATED ID: 7KG0 RELATED DB: PDB REMARK 900 RELATED ID: 7KG7 RELATED DB: PDB REMARK 900 RELATED ID: 7KG6 RELATED DB: PDB DBREF 7LG7 A 3 169 UNP P0DTD1 R1AB_SARS2 1025 1191 SEQADV 7LG7 GLY A 1 UNP P0DTD1 EXPRESSION TAG SEQADV 7LG7 PRO A 2 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 169 GLY PRO VAL ASN SER PHE SER GLY TYR LEU LYS LEU THR SEQRES 2 A 169 ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU GLU SEQRES 3 A 169 ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA ALA SEQRES 4 A 169 ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY ALA SEQRES 5 A 169 LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SER SEQRES 6 A 169 ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL GLY SEQRES 7 A 169 GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS HIS SEQRES 8 A 169 CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY GLU SEQRES 9 A 169 ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE ASN SEQRES 10 A 169 GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA GLY SEQRES 11 A 169 ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL CYS SEQRES 12 A 169 VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL PHE SEQRES 13 A 169 ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE LEU HET XYJ A 201 30 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HETNAM XYJ 3-[(1,3-DIMETHYL-2,6-DIOXO-2,3,6,9-TETRAHYDRO-1H-PURIN- HETNAM 2 XYJ 8-YL)SULFANYL]-N-{[2-(MORPHOLIN-4-YL) HETNAM 3 XYJ ETHYL]SULFONYL}PROPANAMIDE HETNAM SO4 SULFATE ION FORMUL 2 XYJ C16 H24 N6 O6 S2 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *50(H2 O) HELIX 1 AA1 ASP A 22 LYS A 31 1 10 HELIX 2 AA2 GLY A 47 THR A 57 1 11 HELIX 3 AA3 ASN A 59 GLY A 73 1 15 HELIX 4 AA4 GLN A 107 ASN A 115 1 9 HELIX 5 AA5 PHE A 116 HIS A 119 5 4 HELIX 6 AA6 ASP A 135 VAL A 147 1 13 HELIX 7 AA7 ASP A 157 SER A 167 1 11 SHEET 1 AA1 4 LEU A 10 LYS A 11 0 SHEET 2 AA1 4 VAL A 16 ASN A 20 -1 O ILE A 18 N LEU A 10 SHEET 3 AA1 4 ASN A 150 VAL A 155 1 O LEU A 153 N TYR A 17 SHEET 4 AA1 4 VAL A 121 ALA A 124 1 N LEU A 122 O TYR A 152 SHEET 1 AA2 3 VAL A 34 ALA A 39 0 SHEET 2 AA2 3 HIS A 91 VAL A 96 1 O VAL A 95 N ALA A 39 SHEET 3 AA2 3 SER A 80 SER A 84 -1 N LEU A 83 O CYS A 92 SITE 1 AC1 17 ASP A 22 ILE A 23 ALA A 38 ASN A 40 SITE 2 AC1 17 LYS A 44 VAL A 49 ALA A 50 LEU A 126 SITE 3 AC1 17 SER A 128 GLY A 130 ILE A 131 PHE A 132 SITE 4 AC1 17 ALA A 154 PHE A 156 HOH A 307 HOH A 310 SITE 5 AC1 17 HOH A 330 SITE 1 AC2 2 GLY A 47 GLY A 48 SITE 1 AC3 2 SER A 7 GLY A 8 SITE 1 AC4 4 LYS A 55 ASN A 58 ASN A 59 TYR A 68 SITE 1 AC5 5 SER A 84 HIS A 86 LYS A 90 HIS A 91 SITE 2 AC5 5 HOH A 333 CRYST1 113.097 113.097 41.659 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008842 0.005105 0.000000 0.00000 SCALE2 0.000000 0.010210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024004 0.00000