HEADER HYDROLASE 20-JAN-21 7LGP TITLE DAPE ENZYME FROM SHIGELLA FLEXNERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SDAP DESUCCINYLASE,N-SUCCINYL-LL-2,6-DIAMINOHEPTANEDIOATE COMPND 5 AMIDOHYDROLASE; COMPND 6 EC: 3.5.1.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 2A STR. 301; SOURCE 3 ORGANISM_TAXID: 198214; SOURCE 4 GENE: DAPE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS DAPE, M20 PEPTIDASE, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,M.ENDRES,D.P.BECKER,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 18-OCT-23 7LGP 1 REMARK REVDAT 1 27-JAN-21 7LGP 0 JRNL AUTH J.OSIPIUK,M.ENDRES,D.P.BECKER,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL DAPE ENZYME FROM SHIGELLA FLEXNERI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 91019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4855 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6515 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 332 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5811 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 621 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 1.53000 REMARK 3 B12 (A**2) : -0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.564 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6282 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5965 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8620 ; 1.561 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13720 ; 1.406 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 844 ; 6.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 374 ;33.577 ;22.299 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1047 ;13.314 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;19.206 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 826 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7422 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1534 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 509 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8864 16.0398 45.1513 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.0530 REMARK 3 T33: 0.0856 T12: -0.0124 REMARK 3 T13: 0.0100 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.4513 L22: 0.3570 REMARK 3 L33: 0.4421 L12: 0.0664 REMARK 3 L13: -0.3777 L23: -0.0186 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: 0.0446 S13: -0.0243 REMARK 3 S21: 0.0408 S22: -0.0296 S23: 0.1367 REMARK 3 S31: 0.0053 S32: -0.0576 S33: 0.0329 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 511 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5217 10.9074 -10.9370 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.0199 REMARK 3 T33: 0.0133 T12: -0.0070 REMARK 3 T13: -0.0172 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.1741 L22: 0.2340 REMARK 3 L33: 1.3165 L12: -0.0526 REMARK 3 L13: -0.1270 L23: 0.5295 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: 0.0164 S13: -0.0112 REMARK 3 S21: -0.0523 S22: -0.0213 S23: 0.0166 REMARK 3 S31: -0.0245 S32: -0.0590 S33: 0.0120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7LGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95874 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 47.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 1.26700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 4O23 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8 M AMMONIUM SULFATE, 150 MM TRIS REMARK 280 BUFFER PH 8.0, 10 MM SODIUM POTASSIUM TARTRATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 90.07050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.00223 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 66.69700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 90.07050 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 52.00223 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 66.69700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 90.07050 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 52.00223 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.69700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 90.07050 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 52.00223 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.69700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 90.07050 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 52.00223 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 66.69700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 90.07050 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 52.00223 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 66.69700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 104.00445 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 133.39400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 104.00445 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 133.39400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 104.00445 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 133.39400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 104.00445 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 133.39400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 104.00445 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 133.39400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 104.00445 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 133.39400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -268.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER B -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 605 O HOH A 861 2.18 REMARK 500 O HOH B 629 O HOH B 832 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 46 -124.27 53.42 REMARK 500 MET A 100 36.53 -147.13 REMARK 500 ALA A 135 -132.61 -107.41 REMARK 500 GLU A 167 -39.07 -132.02 REMARK 500 ASN A 223 -158.57 -157.29 REMARK 500 GLU A 313 -51.22 74.98 REMARK 500 GLU A 313 -46.89 71.54 REMARK 500 ALA B 46 -114.55 55.79 REMARK 500 MET B 100 42.47 -145.71 REMARK 500 ALA B 135 -127.24 -105.22 REMARK 500 ASN B 223 -159.59 -153.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 509 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 57 O REMARK 620 2 THR A 122 O 84.5 REMARK 620 3 HOH A 760 O 81.3 91.4 REMARK 620 4 HOH A 830 O 78.7 82.1 159.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 66 NE2 REMARK 620 2 ASP A 99 OD1 98.4 REMARK 620 3 GLU A 162 OE1 120.0 104.7 REMARK 620 4 HOH A 672 O 111.6 110.3 110.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 510 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 57 O REMARK 620 2 THR B 122 O 74.2 REMARK 620 3 HOH B 617 O 71.1 69.9 REMARK 620 4 HOH B 650 O 88.2 161.6 110.1 REMARK 620 5 HOH B 766 O 87.3 83.1 148.9 90.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 66 NE2 REMARK 620 2 ASP B 99 OD1 103.5 REMARK 620 3 GLU B 162 OE1 120.2 108.0 REMARK 620 4 HOH B 619 O 105.2 108.2 111.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 511 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 223 O REMARK 620 2 PHE B 226 O 83.4 REMARK 620 3 HOH B 816 O 82.9 162.3 REMARK 620 4 HOH B 846 O 112.8 87.9 107.7 REMARK 620 5 HOH B 857 O 178.7 95.6 98.0 67.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90245 RELATED DB: TARGETTRACK DBREF 7LGP A 1 375 UNP D2AGR7 D2AGR7_SHIF2 1 375 DBREF 7LGP B 1 375 UNP D2AGR7 D2AGR7_SHIF2 1 375 SEQADV 7LGP SER A -2 UNP D2AGR7 EXPRESSION TAG SEQADV 7LGP ASN A -1 UNP D2AGR7 EXPRESSION TAG SEQADV 7LGP ALA A 0 UNP D2AGR7 EXPRESSION TAG SEQADV 7LGP SER B -2 UNP D2AGR7 EXPRESSION TAG SEQADV 7LGP ASN B -1 UNP D2AGR7 EXPRESSION TAG SEQADV 7LGP ALA B 0 UNP D2AGR7 EXPRESSION TAG SEQRES 1 A 378 SER ASN ALA MET SER CYS PRO VAL ILE GLU LEU THR GLN SEQRES 2 A 378 GLN LEU ILE ARG ARG PRO SER LEU SER PRO ASP ASP ALA SEQRES 3 A 378 GLY CYS GLN ALA LEU LEU ILE GLU ARG LEU GLN ALA ILE SEQRES 4 A 378 GLY PHE THR VAL GLU ARG MET ASP PHE ALA ASP THR GLN SEQRES 5 A 378 ASN PHE TRP ALA TRP ARG GLY GLN GLY GLU THR LEU ALA SEQRES 6 A 378 PHE ALA GLY HIS THR ASP VAL VAL PRO PRO GLY ASP ALA SEQRES 7 A 378 ASP ARG TRP ILE ASN PRO PRO PHE GLU PRO THR ILE ARG SEQRES 8 A 378 ASP GLY MET LEU PHE GLY ARG GLY ALA ALA ASP MET LYS SEQRES 9 A 378 GLY SER LEU ALA ALA MET VAL VAL ALA ALA GLU ARG PHE SEQRES 10 A 378 VAL ALA GLN HIS PRO ASN HIS THR GLY ARG LEU ALA PHE SEQRES 11 A 378 LEU ILE THR SER ASP GLU GLU ALA SER ALA HIS ASN GLY SEQRES 12 A 378 THR VAL LYS VAL VAL GLU ALA LEU MET ALA ARG ASN GLU SEQRES 13 A 378 ARG LEU ASP TYR CYS LEU VAL GLY GLU PRO SER SER ILE SEQRES 14 A 378 GLU VAL VAL GLY ASP VAL VAL LYS ASN GLY ARG ARG GLY SEQRES 15 A 378 SER LEU THR CYS ASN LEU THR ILE HIS GLY VAL GLN GLY SEQRES 16 A 378 HIS VAL ALA TYR PRO HIS LEU ALA ASP ASN PRO VAL HIS SEQRES 17 A 378 ARG ALA ALA PRO PHE LEU ASN GLU LEU VAL ALA ILE GLU SEQRES 18 A 378 TRP ASP GLN GLY ASN GLU PHE PHE PRO ALA THR SER MET SEQRES 19 A 378 GLN ILE ALA ASN ILE GLN ALA GLY THR GLY SER ASN ASN SEQRES 20 A 378 VAL ILE PRO GLY GLU LEU PHE VAL GLN PHE ASN PHE ARG SEQRES 21 A 378 PHE SER THR GLU LEU THR ASP GLU MET ILE LYS ALA GLN SEQRES 22 A 378 VAL LEU ALA LEU LEU GLU LYS HIS GLN LEU ARG TYR THR SEQRES 23 A 378 VAL ASP TRP TRP LEU SER GLY GLN PRO PHE LEU THR ALA SEQRES 24 A 378 ARG GLY LYS LEU VAL ASP ALA VAL VAL ASN ALA VAL GLU SEQRES 25 A 378 HIS TYR ASN GLU ILE LYS PRO GLN LEU LEU THR THR GLY SEQRES 26 A 378 GLY THR SER ASP GLY ARG PHE ILE ALA ARG MET GLY ALA SEQRES 27 A 378 GLN VAL VAL GLU LEU GLY PRO VAL ASN ALA THR ILE HIS SEQRES 28 A 378 LYS ILE ASN GLU CYS VAL ASN ALA ALA ASP LEU GLN LEU SEQRES 29 A 378 LEU ALA ARG MET TYR GLN ARG ILE MET GLU GLN LEU VAL SEQRES 30 A 378 ALA SEQRES 1 B 378 SER ASN ALA MET SER CYS PRO VAL ILE GLU LEU THR GLN SEQRES 2 B 378 GLN LEU ILE ARG ARG PRO SER LEU SER PRO ASP ASP ALA SEQRES 3 B 378 GLY CYS GLN ALA LEU LEU ILE GLU ARG LEU GLN ALA ILE SEQRES 4 B 378 GLY PHE THR VAL GLU ARG MET ASP PHE ALA ASP THR GLN SEQRES 5 B 378 ASN PHE TRP ALA TRP ARG GLY GLN GLY GLU THR LEU ALA SEQRES 6 B 378 PHE ALA GLY HIS THR ASP VAL VAL PRO PRO GLY ASP ALA SEQRES 7 B 378 ASP ARG TRP ILE ASN PRO PRO PHE GLU PRO THR ILE ARG SEQRES 8 B 378 ASP GLY MET LEU PHE GLY ARG GLY ALA ALA ASP MET LYS SEQRES 9 B 378 GLY SER LEU ALA ALA MET VAL VAL ALA ALA GLU ARG PHE SEQRES 10 B 378 VAL ALA GLN HIS PRO ASN HIS THR GLY ARG LEU ALA PHE SEQRES 11 B 378 LEU ILE THR SER ASP GLU GLU ALA SER ALA HIS ASN GLY SEQRES 12 B 378 THR VAL LYS VAL VAL GLU ALA LEU MET ALA ARG ASN GLU SEQRES 13 B 378 ARG LEU ASP TYR CYS LEU VAL GLY GLU PRO SER SER ILE SEQRES 14 B 378 GLU VAL VAL GLY ASP VAL VAL LYS ASN GLY ARG ARG GLY SEQRES 15 B 378 SER LEU THR CYS ASN LEU THR ILE HIS GLY VAL GLN GLY SEQRES 16 B 378 HIS VAL ALA TYR PRO HIS LEU ALA ASP ASN PRO VAL HIS SEQRES 17 B 378 ARG ALA ALA PRO PHE LEU ASN GLU LEU VAL ALA ILE GLU SEQRES 18 B 378 TRP ASP GLN GLY ASN GLU PHE PHE PRO ALA THR SER MET SEQRES 19 B 378 GLN ILE ALA ASN ILE GLN ALA GLY THR GLY SER ASN ASN SEQRES 20 B 378 VAL ILE PRO GLY GLU LEU PHE VAL GLN PHE ASN PHE ARG SEQRES 21 B 378 PHE SER THR GLU LEU THR ASP GLU MET ILE LYS ALA GLN SEQRES 22 B 378 VAL LEU ALA LEU LEU GLU LYS HIS GLN LEU ARG TYR THR SEQRES 23 B 378 VAL ASP TRP TRP LEU SER GLY GLN PRO PHE LEU THR ALA SEQRES 24 B 378 ARG GLY LYS LEU VAL ASP ALA VAL VAL ASN ALA VAL GLU SEQRES 25 B 378 HIS TYR ASN GLU ILE LYS PRO GLN LEU LEU THR THR GLY SEQRES 26 B 378 GLY THR SER ASP GLY ARG PHE ILE ALA ARG MET GLY ALA SEQRES 27 B 378 GLN VAL VAL GLU LEU GLY PRO VAL ASN ALA THR ILE HIS SEQRES 28 B 378 LYS ILE ASN GLU CYS VAL ASN ALA ALA ASP LEU GLN LEU SEQRES 29 B 378 LEU ALA ARG MET TYR GLN ARG ILE MET GLU GLN LEU VAL SEQRES 30 B 378 ALA HET ZN A 501 1 HET CL A 502 1 HET CL A 503 1 HET CL A 504 1 HET CL A 505 1 HET CL A 506 1 HET CL A 507 1 HET CL A 508 1 HET NA A 509 1 HET ZN B 501 1 HET CL B 502 1 HET CL B 503 1 HET CL B 504 1 HET CL B 505 1 HET CL B 506 1 HET CL B 507 1 HET CL B 508 1 HET CL B 509 1 HET NA B 510 1 HET NA B 511 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CL 15(CL 1-) FORMUL 11 NA 3(NA 1+) FORMUL 23 HOH *621(H2 O) HELIX 1 AA1 CYS A 3 ARG A 15 1 13 HELIX 2 AA2 GLY A 24 ALA A 35 1 12 HELIX 3 AA3 ASP A 74 TRP A 78 5 5 HELIX 4 AA4 MET A 100 HIS A 118 1 19 HELIX 5 AA5 GLY A 140 ARG A 151 1 12 HELIX 6 AA6 TYR A 196 ALA A 200 5 5 HELIX 7 AA7 ASN A 202 ILE A 217 1 16 HELIX 8 AA8 THR A 263 HIS A 278 1 16 HELIX 9 AA9 GLY A 298 GLU A 313 1 16 HELIX 10 AB1 ASP A 326 ALA A 331 1 6 HELIX 11 AB2 ARG A 332 GLY A 334 5 3 HELIX 12 AB3 ALA A 356 ALA A 375 1 20 HELIX 13 AB4 CYS B 3 ARG B 14 1 12 HELIX 14 AB5 GLY B 24 ILE B 36 1 13 HELIX 15 AB6 ASP B 74 TRP B 78 5 5 HELIX 16 AB7 MET B 100 HIS B 118 1 19 HELIX 17 AB8 GLY B 140 ARG B 151 1 12 HELIX 18 AB9 TYR B 196 ALA B 200 5 5 HELIX 19 AC1 ASN B 202 ILE B 217 1 16 HELIX 20 AC2 THR B 263 HIS B 278 1 16 HELIX 21 AC3 GLY B 298 GLU B 313 1 16 HELIX 22 AC4 ASP B 326 ARG B 332 1 7 HELIX 23 AC5 ALA B 356 ALA B 375 1 20 SHEET 1 AA1 6 THR A 39 ARG A 42 0 SHEET 2 AA1 6 ASN A 50 ARG A 55 -1 O TRP A 52 N GLU A 41 SHEET 3 AA1 6 ARG A 124 THR A 130 -1 O PHE A 127 N ALA A 53 SHEET 4 AA1 6 THR A 60 HIS A 66 1 N PHE A 63 O ALA A 126 SHEET 5 AA1 6 TYR A 157 VAL A 160 1 O TYR A 157 N ALA A 62 SHEET 6 AA1 6 GLN A 336 GLU A 339 1 O VAL A 338 N VAL A 160 SHEET 1 AA2 3 THR A 86 ARG A 88 0 SHEET 2 AA2 3 MET A 91 PHE A 93 -1 O PHE A 93 N THR A 86 SHEET 3 AA2 3 CYS A 353 ASN A 355 -1 O VAL A 354 N LEU A 92 SHEET 1 AA3 2 VAL A 172 LYS A 174 0 SHEET 2 AA3 2 GLN A 317 LEU A 319 1 O GLN A 317 N VAL A 173 SHEET 1 AA4 2 GLY A 176 ARG A 177 0 SHEET 2 AA4 2 PHE A 293 LEU A 294 -1 O PHE A 293 N ARG A 177 SHEET 1 AA5 8 TYR A 282 GLY A 290 0 SHEET 2 AA5 8 GLY A 179 HIS A 188 -1 N THR A 186 O THR A 283 SHEET 3 AA5 8 GLU A 249 PHE A 258 -1 O PHE A 254 N CYS A 183 SHEET 4 AA5 8 SER A 230 ALA A 238 -1 N ASN A 235 O GLN A 253 SHEET 5 AA5 8 SER B 230 ALA B 238 -1 O ALA B 238 N ILE A 236 SHEET 6 AA5 8 GLU B 249 PHE B 258 -1 O PHE B 251 N GLN B 237 SHEET 7 AA5 8 GLY B 179 HIS B 188 -1 N LEU B 185 O VAL B 252 SHEET 8 AA5 8 TYR B 282 GLY B 290 -1 O THR B 283 N THR B 186 SHEET 1 AA6 2 GLY A 192 HIS A 193 0 SHEET 2 AA6 2 VAL A 245 ILE A 246 -1 O ILE A 246 N GLY A 192 SHEET 1 AA7 6 THR B 39 ARG B 42 0 SHEET 2 AA7 6 ASN B 50 ARG B 55 -1 O TRP B 52 N GLU B 41 SHEET 3 AA7 6 ARG B 124 THR B 130 -1 O PHE B 127 N ALA B 53 SHEET 4 AA7 6 THR B 60 HIS B 66 1 N PHE B 63 O ALA B 126 SHEET 5 AA7 6 TYR B 157 VAL B 160 1 O TYR B 157 N ALA B 62 SHEET 6 AA7 6 GLN B 336 GLU B 339 1 O VAL B 338 N VAL B 160 SHEET 1 AA8 3 THR B 86 ARG B 88 0 SHEET 2 AA8 3 MET B 91 PHE B 93 -1 O PHE B 93 N THR B 86 SHEET 3 AA8 3 CYS B 353 ASN B 355 -1 O VAL B 354 N LEU B 92 SHEET 1 AA9 2 VAL B 172 LYS B 174 0 SHEET 2 AA9 2 GLN B 317 LEU B 319 1 O GLN B 317 N VAL B 173 SHEET 1 AB1 2 GLY B 176 ARG B 177 0 SHEET 2 AB1 2 PHE B 293 LEU B 294 -1 O PHE B 293 N ARG B 177 SHEET 1 AB2 2 GLY B 192 HIS B 193 0 SHEET 2 AB2 2 VAL B 245 ILE B 246 -1 O ILE B 246 N GLY B 192 LINK O GLN A 57 NA NA A 509 1555 1555 2.49 LINK NE2 HIS A 66 ZN ZN A 501 1555 1555 2.02 LINK OD1 ASP A 99 ZN ZN A 501 1555 1555 1.95 LINK O THR A 122 NA NA A 509 1555 1555 2.37 LINK OE1 GLU A 162 ZN ZN A 501 1555 1555 2.01 LINK ZN ZN A 501 O HOH A 672 1555 1555 2.02 LINK NA NA A 509 O HOH A 760 1555 1555 2.35 LINK NA NA A 509 O HOH A 830 1555 1555 2.27 LINK O GLN B 57 NA NA B 510 1555 1555 2.80 LINK NE2 HIS B 66 ZN ZN B 501 1555 1555 2.10 LINK OD1 ASP B 99 ZN ZN B 501 1555 1555 1.93 LINK O THR B 122 NA NA B 510 1555 1555 2.50 LINK OE1 GLU B 162 ZN ZN B 501 1555 1555 1.96 LINK O ASN B 223 NA NA B 511 1555 1555 2.26 LINK O PHE B 226 NA NA B 511 1555 1555 2.53 LINK ZN ZN B 501 O HOH B 619 1555 1555 2.13 LINK NA NA B 510 O HOH B 617 1555 16544 2.30 LINK NA NA B 510 O HOH B 650 1555 1555 2.24 LINK NA NA B 510 O HOH B 766 1555 1555 2.73 LINK NA NA B 511 O HOH B 816 1555 1555 2.48 LINK NA NA B 511 O HOH B 846 1555 1555 2.70 LINK NA NA B 511 O HOH B 857 1555 1555 2.66 CISPEP 1 SER A 19 PRO A 20 0 -2.72 CISPEP 2 ASP A 99 MET A 100 0 -3.54 CISPEP 3 SER B 19 PRO B 20 0 -5.74 CISPEP 4 ASP B 99 MET B 100 0 -4.96 CRYST1 180.141 180.141 200.091 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005551 0.003205 0.000000 0.00000 SCALE2 0.000000 0.006410 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004998 0.00000