HEADER PROTEIN BINDING 27-JAN-21 7LIO TITLE X-RAY STRUCTURE OF SPOP MATH DOMAIN (S119D) IN COMPLEX WITH A 53BP1 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECKLE-TYPE POZ PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MATH DOMAIN; COMPND 5 SYNONYM: HIB HOMOLOG 1,ROADKILL HOMOLOG 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TP53-BINDING PROTEIN 1 PEPTIDE; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: P53BP1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPOP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS SPOP, 53BP1, DNA DAMAGE RESPONSE, HOMOLOGOUS RECOMBINATION, UBIQUITIN KEYWDS 2 LIGASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.V.BOTUYAN,G.CUI,G.MER REVDAT 3 18-OCT-23 7LIO 1 REMARK REVDAT 2 30-JUN-21 7LIO 1 JRNL REVDAT 1 14-APR-21 7LIO 0 JRNL AUTH D.WANG,J.MA,M.V.BOTUYAN,G.CUI,Y.YAN,D.DING,Y.ZHOU, JRNL AUTH 2 E.W.KRUEGER,J.PEI,X.WU,L.WANG,H.PEI,M.A.MCNIVEN,D.YE,G.MER, JRNL AUTH 3 H.HUANG JRNL TITL ATM-PHOSPHORYLATED SPOP CONTRIBUTES TO 53BP1 EXCLUSION FROM JRNL TITL 2 CHROMATIN DURING DNA REPLICATION. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34144977 JRNL DOI 10.1126/SCIADV.ABD9208 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 14508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6500 - 6.4700 0.95 1366 152 0.2409 0.3019 REMARK 3 2 6.4700 - 5.1400 1.00 1352 150 0.2036 0.2195 REMARK 3 3 5.1400 - 4.4900 1.00 1317 147 0.1693 0.2172 REMARK 3 4 4.4900 - 4.0800 1.00 1316 145 0.1976 0.2523 REMARK 3 5 4.0800 - 3.7900 1.00 1303 146 0.2378 0.2716 REMARK 3 6 3.7900 - 3.5600 1.00 1297 143 0.2552 0.3172 REMARK 3 7 3.5600 - 3.3900 1.00 1306 146 0.2640 0.3571 REMARK 3 8 3.3900 - 3.2400 1.00 1282 142 0.3014 0.3617 REMARK 3 9 3.2400 - 3.1100 1.00 1289 143 0.3194 0.3654 REMARK 3 10 3.1100 - 3.0100 0.95 1229 137 0.3629 0.3640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.955 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 100.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2186 REMARK 3 ANGLE : 0.981 2969 REMARK 3 CHIRALITY : 0.070 340 REMARK 3 PLANARITY : 0.004 377 REMARK 3 DIHEDRAL : 13.197 732 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6007 22.9574 -17.1090 REMARK 3 T TENSOR REMARK 3 T11: 0.2870 T22: 1.0136 REMARK 3 T33: 0.9441 T12: 0.0728 REMARK 3 T13: 0.0694 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 3.8105 L22: 4.9057 REMARK 3 L33: 9.1026 L12: -0.1693 REMARK 3 L13: -5.5143 L23: -2.6027 REMARK 3 S TENSOR REMARK 3 S11: 0.5307 S12: -1.2149 S13: 1.4976 REMARK 3 S21: 0.3388 S22: -0.0073 S23: 0.1565 REMARK 3 S31: -0.9796 S32: 1.1527 S33: -0.3822 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4809 25.4714 -14.2740 REMARK 3 T TENSOR REMARK 3 T11: 0.4908 T22: 0.7536 REMARK 3 T33: 0.7318 T12: 0.0974 REMARK 3 T13: -0.0230 T23: 0.0792 REMARK 3 L TENSOR REMARK 3 L11: 6.9926 L22: 7.0089 REMARK 3 L33: 5.5133 L12: 3.0565 REMARK 3 L13: 2.1599 L23: -2.0050 REMARK 3 S TENSOR REMARK 3 S11: -0.0440 S12: -1.6538 S13: 0.4469 REMARK 3 S21: 0.4367 S22: -0.0636 S23: -0.3685 REMARK 3 S31: 0.2505 S32: 0.0480 S33: 0.1742 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2371 15.9208 -10.3001 REMARK 3 T TENSOR REMARK 3 T11: 0.7550 T22: 0.8762 REMARK 3 T33: 1.0971 T12: -0.0333 REMARK 3 T13: -0.0993 T23: 0.2696 REMARK 3 L TENSOR REMARK 3 L11: 7.1262 L22: 7.5752 REMARK 3 L33: 7.2143 L12: -4.7398 REMARK 3 L13: -1.0178 L23: 2.3386 REMARK 3 S TENSOR REMARK 3 S11: 0.1417 S12: -1.2006 S13: 0.6280 REMARK 3 S21: 1.1745 S22: 0.3413 S23: -1.6548 REMARK 3 S31: 0.9377 S32: 1.2637 S33: -0.2643 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.9332 13.4194 -15.0936 REMARK 3 T TENSOR REMARK 3 T11: 0.6125 T22: 1.3523 REMARK 3 T33: 1.2669 T12: -0.0124 REMARK 3 T13: 0.1082 T23: 0.4156 REMARK 3 L TENSOR REMARK 3 L11: 2.0095 L22: 6.1183 REMARK 3 L33: 9.0556 L12: 0.6050 REMARK 3 L13: 4.1457 L23: 0.2617 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: -1.6269 S13: -0.8628 REMARK 3 S21: 0.3407 S22: 0.1718 S23: 0.2427 REMARK 3 S31: 0.8956 S32: -1.8885 S33: -0.1102 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0436 11.5724 -15.0480 REMARK 3 T TENSOR REMARK 3 T11: 0.4477 T22: 0.9698 REMARK 3 T33: 0.9990 T12: 0.1718 REMARK 3 T13: 0.1125 T23: 0.3417 REMARK 3 L TENSOR REMARK 3 L11: 4.3419 L22: 9.1087 REMARK 3 L33: 8.7289 L12: 3.6791 REMARK 3 L13: -6.0534 L23: -6.2327 REMARK 3 S TENSOR REMARK 3 S11: 0.4844 S12: -1.7444 S13: -0.8249 REMARK 3 S21: 0.1601 S22: 1.6942 S23: 1.7251 REMARK 3 S31: 0.6617 S32: 0.0474 S33: -1.2018 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4547 15.5483 -30.6973 REMARK 3 T TENSOR REMARK 3 T11: 0.7204 T22: 0.6526 REMARK 3 T33: 1.1422 T12: -0.0576 REMARK 3 T13: 0.0059 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 2.1233 L22: 2.7118 REMARK 3 L33: 2.5756 L12: -1.3059 REMARK 3 L13: -1.0773 L23: 2.6475 REMARK 3 S TENSOR REMARK 3 S11: 0.5181 S12: -0.2708 S13: -0.3580 REMARK 3 S21: -1.1957 S22: 0.9231 S23: -0.8448 REMARK 3 S31: 0.5307 S32: 0.4284 S33: -1.3487 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.8119 20.6318 -20.6762 REMARK 3 T TENSOR REMARK 3 T11: 0.3933 T22: 0.6650 REMARK 3 T33: 0.7857 T12: -0.0665 REMARK 3 T13: -0.0457 T23: 0.0913 REMARK 3 L TENSOR REMARK 3 L11: 6.0793 L22: 8.5217 REMARK 3 L33: 4.4877 L12: -2.3016 REMARK 3 L13: -2.8832 L23: -0.8119 REMARK 3 S TENSOR REMARK 3 S11: 0.1906 S12: 0.4323 S13: -0.0112 REMARK 3 S21: 0.2931 S22: 0.7347 S23: 0.5033 REMARK 3 S31: -0.8840 S32: -1.2853 S33: -1.1546 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1638 THROUGH 1644 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.2177 7.0450 -9.3882 REMARK 3 T TENSOR REMARK 3 T11: 0.9599 T22: 0.6984 REMARK 3 T33: 2.4224 T12: 0.5744 REMARK 3 T13: 0.3737 T23: 1.0213 REMARK 3 L TENSOR REMARK 3 L11: 7.8435 L22: 9.4400 REMARK 3 L33: 6.1990 L12: -2.7951 REMARK 3 L13: 1.6225 L23: 0.2001 REMARK 3 S TENSOR REMARK 3 S11: 1.1388 S12: -0.5977 S13: -0.7860 REMARK 3 S21: 0.9421 S22: 0.6795 S23: 1.4759 REMARK 3 S31: -0.4224 S32: -1.4906 S33: -1.3406 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.8484 24.1136 -17.8015 REMARK 3 T TENSOR REMARK 3 T11: 0.4557 T22: 0.9135 REMARK 3 T33: 1.0995 T12: 0.0554 REMARK 3 T13: 0.1931 T23: 0.1126 REMARK 3 L TENSOR REMARK 3 L11: 6.0709 L22: 3.1256 REMARK 3 L33: 7.0405 L12: 3.8894 REMARK 3 L13: -7.1297 L23: -3.6621 REMARK 3 S TENSOR REMARK 3 S11: 0.4335 S12: -0.9743 S13: 0.3912 REMARK 3 S21: 0.6057 S22: -0.1471 S23: -0.4906 REMARK 3 S31: -0.0867 S32: 0.5448 S33: -0.3478 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.6054 23.4397 -27.7197 REMARK 3 T TENSOR REMARK 3 T11: 0.7369 T22: 1.0375 REMARK 3 T33: 0.8605 T12: 0.0815 REMARK 3 T13: 0.0937 T23: 0.1641 REMARK 3 L TENSOR REMARK 3 L11: 5.9431 L22: 3.3333 REMARK 3 L33: 8.5460 L12: -1.2135 REMARK 3 L13: 0.9391 L23: 4.9736 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: 0.9009 S13: 0.1805 REMARK 3 S21: -1.1983 S22: -0.7384 S23: 0.6210 REMARK 3 S31: -0.1037 S32: -1.6508 S33: 0.5701 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.6516 17.8194 -27.4206 REMARK 3 T TENSOR REMARK 3 T11: 1.1002 T22: 1.1710 REMARK 3 T33: 1.0716 T12: 0.1432 REMARK 3 T13: 0.3900 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 9.2604 L22: 7.4993 REMARK 3 L33: 6.3232 L12: 5.1347 REMARK 3 L13: -6.4470 L23: -6.3623 REMARK 3 S TENSOR REMARK 3 S11: -1.6098 S12: 0.6761 S13: -0.7084 REMARK 3 S21: -1.4500 S22: 0.1625 S23: -1.5868 REMARK 3 S31: 1.8663 S32: 0.4444 S33: 1.2176 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 139 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.7538 7.8827 -18.9037 REMARK 3 T TENSOR REMARK 3 T11: 1.3759 T22: 0.9038 REMARK 3 T33: 2.1558 T12: -0.0626 REMARK 3 T13: 0.4796 T23: -0.3963 REMARK 3 L TENSOR REMARK 3 L11: 7.2826 L22: 6.5701 REMARK 3 L33: 2.0053 L12: -6.0020 REMARK 3 L13: -1.2208 L23: 5.0207 REMARK 3 S TENSOR REMARK 3 S11: -0.2192 S12: 0.6325 S13: -2.9891 REMARK 3 S21: -4.1269 S22: -1.5499 S23: 0.7404 REMARK 3 S31: 0.4757 S32: -2.7365 S33: 1.6513 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 144 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.6626 14.1666 -16.4881 REMARK 3 T TENSOR REMARK 3 T11: 0.9330 T22: 1.0699 REMARK 3 T33: 1.2238 T12: 0.3259 REMARK 3 T13: 0.3389 T23: 0.3022 REMARK 3 L TENSOR REMARK 3 L11: 4.6188 L22: 6.7668 REMARK 3 L33: 5.1067 L12: 5.3770 REMARK 3 L13: -2.5459 L23: -4.6323 REMARK 3 S TENSOR REMARK 3 S11: -0.9981 S12: -0.6000 S13: -2.6152 REMARK 3 S21: -0.8334 S22: -0.4831 S23: -1.7789 REMARK 3 S31: 2.2608 S32: 1.8125 S33: 1.6476 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1639 THROUGH 1645 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.4540 19.8039 -35.5915 REMARK 3 T TENSOR REMARK 3 T11: 1.2634 T22: 2.0689 REMARK 3 T33: 1.0578 T12: -0.2223 REMARK 3 T13: 0.2388 T23: -0.9039 REMARK 3 L TENSOR REMARK 3 L11: 5.1431 L22: 8.2192 REMARK 3 L33: 2.0003 L12: 3.4267 REMARK 3 L13: -1.8248 L23: 2.9959 REMARK 3 S TENSOR REMARK 3 S11: 0.1871 S12: 1.3117 S13: 0.5021 REMARK 3 S21: 0.1082 S22: -2.0829 S23: 1.4101 REMARK 3 S31: -2.3204 S32: -3.6553 S33: 1.9506 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14508 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.010 REMARK 200 RESOLUTION RANGE LOW (A) : 48.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 31.50 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.09500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.16_3549 REMARK 200 STARTING MODEL: 7LIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SPOP MATH (S119D) WAS AT A REMARK 280 CONCENTRATION OF 20 MG/ML WITH A 1:5 PROTEIN:53BP1 PEPTIDE MOLAR REMARK 280 RATIO. CRYSTALS WERE GROWN BY THE HANGING DROP METHOD, MIXING 2 REMARK 280 UL OF THE PROTEIN SAMPLE IN 20 MM TRIS-HCL, PH 7.6, 150 MM NACL, REMARK 280 5 MM DTT AND 2 UL OF THE RESERVOIR SOLUTION FOR THE DROP. THE REMARK 280 RESERVOIR SOLUTION WAS 0.5 ML OF 2 M (NH4)2SO4., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.07450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.79600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.79600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.53725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.79600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.79600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.61175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.79600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.79600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.53725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.79600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.79600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.61175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.07450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 HIS A 27 REMARK 465 MET A 28 REMARK 465 GLN A 165 REMARK 465 ASP A 166 REMARK 465 PRO C 1636 REMARK 465 ALA C 1637 REMARK 465 SER C 1645 REMARK 465 SER C 1646 REMARK 465 THR C 1647 REMARK 465 THR C 1648 REMARK 465 PRO C 1649 REMARK 465 THR C 1650 REMARK 465 GLY B 24 REMARK 465 PRO B 25 REMARK 465 GLY B 26 REMARK 465 HIS B 27 REMARK 465 MET B 28 REMARK 465 GLN B 165 REMARK 465 ASP B 166 REMARK 465 PRO D 1636 REMARK 465 ALA D 1637 REMARK 465 THR D 1638 REMARK 465 SER D 1646 REMARK 465 THR D 1647 REMARK 465 THR D 1648 REMARK 465 PRO D 1649 REMARK 465 THR D 1650 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 53 CE NZ REMARK 470 ASN A 62 CG OD1 ND2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LEU A 65 CG CD1 CD2 REMARK 470 LYS A 66 CD CE NZ REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 GLU A 79 CD OE1 OE2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 SER A 96 OG REMARK 470 ARG A 99 CZ NH1 NH2 REMARK 470 LYS A 101 CD CE NZ REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 ARG A 124 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 135 CD CE NZ REMARK 470 ARG B 45 CG CD NE CZ NH1 NH2 REMARK 470 MET B 48 CG SD CE REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 LYS B 53 CE NZ REMARK 470 ASN B 62 CG OD1 ND2 REMARK 470 ASP B 63 CG OD1 OD2 REMARK 470 LYS B 66 CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 ARG B 99 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 101 CD CE NZ REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 GLU B 112 CG CD OE1 OE2 REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 ARG B 121 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 124 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 129 CD CE NZ REMARK 470 LYS B 134 CD CE NZ REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 79 10.73 59.76 REMARK 500 REMARK 500 REMARK: NULL DBREF 7LIO A 29 166 UNP O43791 SPOP_HUMAN 29 166 DBREF 7LIO C 1636 1650 UNP Q12888 TP53B_HUMAN 1636 1650 DBREF 7LIO B 29 166 UNP O43791 SPOP_HUMAN 29 166 DBREF 7LIO D 1636 1650 UNP Q12888 TP53B_HUMAN 1636 1650 SEQADV 7LIO GLY A 24 UNP O43791 EXPRESSION TAG SEQADV 7LIO PRO A 25 UNP O43791 EXPRESSION TAG SEQADV 7LIO GLY A 26 UNP O43791 EXPRESSION TAG SEQADV 7LIO HIS A 27 UNP O43791 EXPRESSION TAG SEQADV 7LIO MET A 28 UNP O43791 EXPRESSION TAG SEQADV 7LIO ASP A 119 UNP O43791 SER 119 ENGINEERED MUTATION SEQADV 7LIO GLY B 24 UNP O43791 EXPRESSION TAG SEQADV 7LIO PRO B 25 UNP O43791 EXPRESSION TAG SEQADV 7LIO GLY B 26 UNP O43791 EXPRESSION TAG SEQADV 7LIO HIS B 27 UNP O43791 EXPRESSION TAG SEQADV 7LIO MET B 28 UNP O43791 EXPRESSION TAG SEQADV 7LIO ASP B 119 UNP O43791 SER 119 ENGINEERED MUTATION SEQRES 1 A 143 GLY PRO GLY HIS MET VAL VAL LYS PHE SER TYR MET TRP SEQRES 2 A 143 THR ILE ASN ASN PHE SER PHE CYS ARG GLU GLU MET GLY SEQRES 3 A 143 GLU VAL ILE LYS SER SER THR PHE SER SER GLY ALA ASN SEQRES 4 A 143 ASP LYS LEU LYS TRP CYS LEU ARG VAL ASN PRO LYS GLY SEQRES 5 A 143 LEU ASP GLU GLU SER LYS ASP TYR LEU SER LEU TYR LEU SEQRES 6 A 143 LEU LEU VAL SER CYS PRO LYS SER GLU VAL ARG ALA LYS SEQRES 7 A 143 PHE LYS PHE SER ILE LEU ASN ALA LYS GLY GLU GLU THR SEQRES 8 A 143 LYS ALA MET GLU ASP GLN ARG ALA TYR ARG PHE VAL GLN SEQRES 9 A 143 GLY LYS ASP TRP GLY PHE LYS LYS PHE ILE ARG ARG ASP SEQRES 10 A 143 PHE LEU LEU ASP GLU ALA ASN GLY LEU LEU PRO ASP ASP SEQRES 11 A 143 LYS LEU THR LEU PHE CYS GLU VAL SER VAL VAL GLN ASP SEQRES 1 C 15 PRO ALA THR PRO THR ALA SER SER SER SER SER THR THR SEQRES 2 C 15 PRO THR SEQRES 1 B 143 GLY PRO GLY HIS MET VAL VAL LYS PHE SER TYR MET TRP SEQRES 2 B 143 THR ILE ASN ASN PHE SER PHE CYS ARG GLU GLU MET GLY SEQRES 3 B 143 GLU VAL ILE LYS SER SER THR PHE SER SER GLY ALA ASN SEQRES 4 B 143 ASP LYS LEU LYS TRP CYS LEU ARG VAL ASN PRO LYS GLY SEQRES 5 B 143 LEU ASP GLU GLU SER LYS ASP TYR LEU SER LEU TYR LEU SEQRES 6 B 143 LEU LEU VAL SER CYS PRO LYS SER GLU VAL ARG ALA LYS SEQRES 7 B 143 PHE LYS PHE SER ILE LEU ASN ALA LYS GLY GLU GLU THR SEQRES 8 B 143 LYS ALA MET GLU ASP GLN ARG ALA TYR ARG PHE VAL GLN SEQRES 9 B 143 GLY LYS ASP TRP GLY PHE LYS LYS PHE ILE ARG ARG ASP SEQRES 10 B 143 PHE LEU LEU ASP GLU ALA ASN GLY LEU LEU PRO ASP ASP SEQRES 11 B 143 LYS LEU THR LEU PHE CYS GLU VAL SER VAL VAL GLN ASP SEQRES 1 D 15 PRO ALA THR PRO THR ALA SER SER SER SER SER THR THR SEQRES 2 D 15 PRO THR HELIX 1 AA1 ARG A 139 ASP A 144 1 6 HELIX 2 AA2 GLU A 145 GLY A 148 5 4 HELIX 3 AA3 LEU A 150 ASP A 152 5 3 HELIX 4 AA4 ARG B 139 ASP B 144 1 6 HELIX 5 AA5 LEU B 150 ASP B 152 5 3 SHEET 1 AA1 4 VAL A 30 ASN A 39 0 SHEET 2 AA1 4 LYS A 154 VAL A 163 -1 O LEU A 155 N ILE A 38 SHEET 3 AA1 4 VAL A 98 LEU A 107 -1 N SER A 105 O PHE A 158 SHEET 4 AA1 4 GLU A 113 GLU A 118 -1 O MET A 117 N PHE A 104 SHEET 1 AA2 4 VAL A 30 ASN A 39 0 SHEET 2 AA2 4 LYS A 154 VAL A 163 -1 O LEU A 155 N ILE A 38 SHEET 3 AA2 4 VAL A 98 LEU A 107 -1 N SER A 105 O PHE A 158 SHEET 4 AA2 4 TYR A 123 PHE A 125 -1 O PHE A 125 N VAL A 98 SHEET 1 AA3 3 ILE A 52 LYS A 53 0 SHEET 2 AA3 3 LYS A 66 ASN A 72 -1 O VAL A 71 N ILE A 52 SHEET 3 AA3 3 PHE A 57 SER A 58 -1 N PHE A 57 O TRP A 67 SHEET 1 AA4 4 ILE A 52 LYS A 53 0 SHEET 2 AA4 4 LYS A 66 ASN A 72 -1 O VAL A 71 N ILE A 52 SHEET 3 AA4 4 TYR A 83 SER A 92 -1 O SER A 85 N ASN A 72 SHEET 4 AA4 4 ASP A 130 ARG A 138 -1 O TRP A 131 N LEU A 88 SHEET 1 AA5 4 VAL B 30 ASN B 39 0 SHEET 2 AA5 4 LYS B 154 VAL B 164 -1 O LEU B 157 N TRP B 36 SHEET 3 AA5 4 VAL B 98 LEU B 107 -1 N LYS B 101 O SER B 162 SHEET 4 AA5 4 GLU B 113 GLU B 118 -1 O MET B 117 N PHE B 104 SHEET 1 AA6 4 VAL B 30 ASN B 39 0 SHEET 2 AA6 4 LYS B 154 VAL B 164 -1 O LEU B 157 N TRP B 36 SHEET 3 AA6 4 VAL B 98 LEU B 107 -1 N LYS B 101 O SER B 162 SHEET 4 AA6 4 TYR B 123 PHE B 125 -1 O PHE B 125 N VAL B 98 SHEET 1 AA7 3 ILE B 52 LYS B 53 0 SHEET 2 AA7 3 LYS B 66 ASN B 72 -1 O VAL B 71 N ILE B 52 SHEET 3 AA7 3 PHE B 57 SER B 58 -1 N PHE B 57 O TRP B 67 SHEET 1 AA8 4 ILE B 52 LYS B 53 0 SHEET 2 AA8 4 LYS B 66 ASN B 72 -1 O VAL B 71 N ILE B 52 SHEET 3 AA8 4 TYR B 83 SER B 92 -1 O LEU B 89 N CYS B 68 SHEET 4 AA8 4 ASP B 130 ARG B 138 -1 O ILE B 137 N LEU B 84 CRYST1 103.592 103.592 130.149 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009653 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007684 0.00000