HEADER RNA BINDING PROTEIN 29-JAN-21 7LJP TITLE STRUCTURE OF THERMOTOGA MARITIMA SMPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SSRA-BINDING PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: SMALL PROTEIN B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: SMPB, TM_0254; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS TRANSFER-MESSENGER RNA, TMRNA, TRANS-TRANSLATION, OLIGONUCLEOTIDE KEYWDS 2 BINDING FOLD, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.W.CHAN,A.MONDRAGON REVDAT 2 18-OCT-23 7LJP 1 REMARK REVDAT 1 09-FEB-22 7LJP 0 JRNL AUTH C.W.CHAN,A.MONDRAGON JRNL TITL CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA SMPB REVEALS ITS JRNL TITL 2 C-TERMINAL TAIL DOMAIN IN A HELICAL CONFORMATION MIMICKING JRNL TITL 3 THAT OF A RIBOSOME-BOUND STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3100 - 5.4000 1.00 2913 140 0.2262 0.2626 REMARK 3 2 5.4000 - 4.2800 1.00 2702 153 0.1615 0.1809 REMARK 3 3 4.2800 - 3.7400 1.00 2658 149 0.1562 0.1745 REMARK 3 4 3.7400 - 3.4000 1.00 2623 145 0.1760 0.2167 REMARK 3 5 3.4000 - 3.1600 1.00 2609 151 0.1874 0.2231 REMARK 3 6 3.1600 - 2.9700 1.00 2599 135 0.1859 0.1958 REMARK 3 7 2.9700 - 2.8200 1.00 2587 143 0.2028 0.2316 REMARK 3 8 2.8200 - 2.7000 1.00 2602 126 0.2021 0.2567 REMARK 3 9 2.7000 - 2.6000 1.00 2567 139 0.1992 0.2283 REMARK 3 10 2.6000 - 2.5100 1.00 2573 118 0.1867 0.2468 REMARK 3 11 2.5100 - 2.4300 1.00 2558 125 0.1829 0.2192 REMARK 3 12 2.4300 - 2.3600 1.00 2590 127 0.1840 0.2579 REMARK 3 13 2.3600 - 2.3000 1.00 2553 142 0.1792 0.2222 REMARK 3 14 2.3000 - 2.2400 1.00 2548 131 0.1799 0.2137 REMARK 3 15 2.2400 - 2.1900 1.00 2556 129 0.1775 0.2296 REMARK 3 16 2.1900 - 2.1400 1.00 2538 141 0.1817 0.2181 REMARK 3 17 2.1400 - 2.1000 1.00 2533 134 0.1862 0.2309 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.192 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3596 REMARK 3 ANGLE : 1.166 4815 REMARK 3 CHIRALITY : 0.083 511 REMARK 3 PLANARITY : 0.008 591 REMARK 3 DIHEDRAL : 15.829 1429 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID -2 THROUGH 132) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8407 -15.5836 10.1220 REMARK 3 T TENSOR REMARK 3 T11: 0.2708 T22: 0.2243 REMARK 3 T33: 0.2393 T12: -0.0225 REMARK 3 T13: -0.0383 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 1.4220 L22: 1.2150 REMARK 3 L33: 0.6338 L12: 0.5104 REMARK 3 L13: 0.2019 L23: -0.1889 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: 0.0793 S13: 0.0136 REMARK 3 S21: -0.0371 S22: 0.0654 S23: 0.1454 REMARK 3 S31: 0.0188 S32: -0.0957 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 0 THROUGH 132) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8796 -29.1899 10.3798 REMARK 3 T TENSOR REMARK 3 T11: 0.2843 T22: 0.3027 REMARK 3 T33: 0.3487 T12: 0.0252 REMARK 3 T13: 0.0013 T23: -0.1253 REMARK 3 L TENSOR REMARK 3 L11: 0.7597 L22: 0.9836 REMARK 3 L33: 1.4147 L12: -0.8261 REMARK 3 L13: -0.3062 L23: 1.1540 REMARK 3 S TENSOR REMARK 3 S11: 0.1276 S12: -0.0656 S13: 0.0084 REMARK 3 S21: -0.0153 S22: 0.0583 S23: -0.3935 REMARK 3 S31: 0.0130 S32: 0.1327 S33: 0.0050 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 0 THROUGH 150) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4257 -35.4532 15.8445 REMARK 3 T TENSOR REMARK 3 T11: 0.3656 T22: 0.3908 REMARK 3 T33: 0.3098 T12: -0.1548 REMARK 3 T13: 0.0644 T23: -0.1572 REMARK 3 L TENSOR REMARK 3 L11: 1.3501 L22: 1.4225 REMARK 3 L33: 0.8936 L12: 0.6052 REMARK 3 L13: 0.3025 L23: 0.1402 REMARK 3 S TENSOR REMARK 3 S11: 0.2420 S12: -0.4422 S13: 0.1675 REMARK 3 S21: 0.3175 S22: -0.3057 S23: 0.1625 REMARK 3 S31: 0.0228 S32: -0.2407 S33: -0.0466 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 0 through 8 or REMARK 3 resid 11 through 41 or resid 43 through REMARK 3 90 or resid 92 or resid 94 through 98 or REMARK 3 resid 100 through 132)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 0 through 8 or REMARK 3 resid 11 through 41 or resid 43 through REMARK 3 90 or resid 92 or resid 94 through 98 or REMARK 3 resid 100 through 132)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 0 through 8 or REMARK 3 resid 11 through 41 or resid 43 through REMARK 3 90 or resid 92 or resid 94 through 98 or REMARK 3 resid 100 through 132)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46791 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 55.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.50 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P6V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH 6.25, 2.0 M AMMONIUM REMARK 280 SULFATE, 10% V/V 1,4-DIOXANE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 205.29533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.64767 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 153.97150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.32383 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 256.61917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 205.29533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 102.64767 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.32383 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 153.97150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 256.61917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 356 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 364 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 326 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 133 REMARK 465 LYS A 134 REMARK 465 TYR A 135 REMARK 465 ASP A 136 REMARK 465 LYS A 137 REMARK 465 ARG A 138 REMARK 465 GLU A 139 REMARK 465 ALA A 140 REMARK 465 ILE A 141 REMARK 465 LYS A 142 REMARK 465 LYS A 143 REMARK 465 ARG A 144 REMARK 465 GLU A 145 REMARK 465 MET A 146 REMARK 465 GLU A 147 REMARK 465 ARG A 148 REMARK 465 LYS A 149 REMARK 465 ILE A 150 REMARK 465 ARG A 151 REMARK 465 GLU A 152 REMARK 465 TYR A 153 REMARK 465 MET A 154 REMARK 465 LYS A 155 REMARK 465 TYR A 156 REMARK 465 SER A 157 REMARK 465 ARG A 158 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 LYS B 133 REMARK 465 LYS B 134 REMARK 465 TYR B 135 REMARK 465 ASP B 136 REMARK 465 LYS B 137 REMARK 465 ARG B 138 REMARK 465 GLU B 139 REMARK 465 ALA B 140 REMARK 465 ILE B 141 REMARK 465 LYS B 142 REMARK 465 LYS B 143 REMARK 465 ARG B 144 REMARK 465 GLU B 145 REMARK 465 MET B 146 REMARK 465 GLU B 147 REMARK 465 ARG B 148 REMARK 465 LYS B 149 REMARK 465 ILE B 150 REMARK 465 ARG B 151 REMARK 465 GLU B 152 REMARK 465 TYR B 153 REMARK 465 MET B 154 REMARK 465 LYS B 155 REMARK 465 TYR B 156 REMARK 465 SER B 157 REMARK 465 ARG B 158 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ARG C 151 REMARK 465 GLU C 152 REMARK 465 TYR C 153 REMARK 465 MET C 154 REMARK 465 LYS C 155 REMARK 465 TYR C 156 REMARK 465 SER C 157 REMARK 465 ARG C 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 322 O HOH B 347 2.10 REMARK 500 O HOH A 363 O HOH A 365 2.14 REMARK 500 O4 SO4 B 204 O HOH B 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DIO C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 206 DBREF 7LJP A 9 158 UNP P56944 SSRP_THEMA 1 150 DBREF 7LJP B 9 158 UNP P56944 SSRP_THEMA 1 150 DBREF 7LJP C 9 158 UNP P56944 SSRP_THEMA 1 150 SEQADV 7LJP SER A -2 UNP P56944 EXPRESSION TAG SEQADV 7LJP ASN A -1 UNP P56944 EXPRESSION TAG SEQADV 7LJP ALA A 0 UNP P56944 EXPRESSION TAG SEQADV 7LJP MET A 1 UNP P56944 EXPRESSION TAG SEQADV 7LJP LYS A 2 UNP P56944 EXPRESSION TAG SEQADV 7LJP VAL A 3 UNP P56944 EXPRESSION TAG SEQADV 7LJP SER A 4 UNP P56944 EXPRESSION TAG SEQADV 7LJP GLY A 5 UNP P56944 EXPRESSION TAG SEQADV 7LJP TRP A 6 UNP P56944 EXPRESSION TAG SEQADV 7LJP GLY A 7 UNP P56944 EXPRESSION TAG SEQADV 7LJP GLU A 8 UNP P56944 EXPRESSION TAG SEQADV 7LJP SER B -2 UNP P56944 EXPRESSION TAG SEQADV 7LJP ASN B -1 UNP P56944 EXPRESSION TAG SEQADV 7LJP ALA B 0 UNP P56944 EXPRESSION TAG SEQADV 7LJP MET B 1 UNP P56944 EXPRESSION TAG SEQADV 7LJP LYS B 2 UNP P56944 EXPRESSION TAG SEQADV 7LJP VAL B 3 UNP P56944 EXPRESSION TAG SEQADV 7LJP SER B 4 UNP P56944 EXPRESSION TAG SEQADV 7LJP GLY B 5 UNP P56944 EXPRESSION TAG SEQADV 7LJP TRP B 6 UNP P56944 EXPRESSION TAG SEQADV 7LJP GLY B 7 UNP P56944 EXPRESSION TAG SEQADV 7LJP GLU B 8 UNP P56944 EXPRESSION TAG SEQADV 7LJP SER C -2 UNP P56944 EXPRESSION TAG SEQADV 7LJP ASN C -1 UNP P56944 EXPRESSION TAG SEQADV 7LJP ALA C 0 UNP P56944 EXPRESSION TAG SEQADV 7LJP MET C 1 UNP P56944 EXPRESSION TAG SEQADV 7LJP LYS C 2 UNP P56944 EXPRESSION TAG SEQADV 7LJP VAL C 3 UNP P56944 EXPRESSION TAG SEQADV 7LJP SER C 4 UNP P56944 EXPRESSION TAG SEQADV 7LJP GLY C 5 UNP P56944 EXPRESSION TAG SEQADV 7LJP TRP C 6 UNP P56944 EXPRESSION TAG SEQADV 7LJP GLY C 7 UNP P56944 EXPRESSION TAG SEQADV 7LJP GLU C 8 UNP P56944 EXPRESSION TAG SEQRES 1 A 161 SER ASN ALA MET LYS VAL SER GLY TRP GLY GLU MET VAL SEQRES 2 A 161 LYS VAL VAL ALA THR ASN LYS LYS ALA TYR THR ASP TYR SEQRES 3 A 161 GLU ILE LEU GLU THR TYR GLU ALA GLY ILE VAL LEU THR SEQRES 4 A 161 GLY THR GLU VAL LYS SER LEU ARG ASN GLY SER VAL ASN SEQRES 5 A 161 PHE LYS ASP SER PHE CYS ARG PHE LYS ASN GLY GLU LEU SEQRES 6 A 161 TYR LEU LEU ASN LEU HIS ILE PRO PRO TYR SER HIS GLY SEQRES 7 A 161 GLY VAL TYR ASN HIS ASP PRO GLU ARG PRO ARG LYS LEU SEQRES 8 A 161 LEU LEU HIS LYS ARG GLU LEU LYS ARG LEU MET GLY LYS SEQRES 9 A 161 VAL GLN GLU GLU GLY VAL THR ILE VAL PRO LEU LYS ILE SEQRES 10 A 161 TYR PHE ASN ASP ARG GLY ILE ALA LYS VAL GLU ILE ALA SEQRES 11 A 161 VAL ALA ARG GLY LYS LYS LYS TYR ASP LYS ARG GLU ALA SEQRES 12 A 161 ILE LYS LYS ARG GLU MET GLU ARG LYS ILE ARG GLU TYR SEQRES 13 A 161 MET LYS TYR SER ARG SEQRES 1 B 161 SER ASN ALA MET LYS VAL SER GLY TRP GLY GLU MET VAL SEQRES 2 B 161 LYS VAL VAL ALA THR ASN LYS LYS ALA TYR THR ASP TYR SEQRES 3 B 161 GLU ILE LEU GLU THR TYR GLU ALA GLY ILE VAL LEU THR SEQRES 4 B 161 GLY THR GLU VAL LYS SER LEU ARG ASN GLY SER VAL ASN SEQRES 5 B 161 PHE LYS ASP SER PHE CYS ARG PHE LYS ASN GLY GLU LEU SEQRES 6 B 161 TYR LEU LEU ASN LEU HIS ILE PRO PRO TYR SER HIS GLY SEQRES 7 B 161 GLY VAL TYR ASN HIS ASP PRO GLU ARG PRO ARG LYS LEU SEQRES 8 B 161 LEU LEU HIS LYS ARG GLU LEU LYS ARG LEU MET GLY LYS SEQRES 9 B 161 VAL GLN GLU GLU GLY VAL THR ILE VAL PRO LEU LYS ILE SEQRES 10 B 161 TYR PHE ASN ASP ARG GLY ILE ALA LYS VAL GLU ILE ALA SEQRES 11 B 161 VAL ALA ARG GLY LYS LYS LYS TYR ASP LYS ARG GLU ALA SEQRES 12 B 161 ILE LYS LYS ARG GLU MET GLU ARG LYS ILE ARG GLU TYR SEQRES 13 B 161 MET LYS TYR SER ARG SEQRES 1 C 161 SER ASN ALA MET LYS VAL SER GLY TRP GLY GLU MET VAL SEQRES 2 C 161 LYS VAL VAL ALA THR ASN LYS LYS ALA TYR THR ASP TYR SEQRES 3 C 161 GLU ILE LEU GLU THR TYR GLU ALA GLY ILE VAL LEU THR SEQRES 4 C 161 GLY THR GLU VAL LYS SER LEU ARG ASN GLY SER VAL ASN SEQRES 5 C 161 PHE LYS ASP SER PHE CYS ARG PHE LYS ASN GLY GLU LEU SEQRES 6 C 161 TYR LEU LEU ASN LEU HIS ILE PRO PRO TYR SER HIS GLY SEQRES 7 C 161 GLY VAL TYR ASN HIS ASP PRO GLU ARG PRO ARG LYS LEU SEQRES 8 C 161 LEU LEU HIS LYS ARG GLU LEU LYS ARG LEU MET GLY LYS SEQRES 9 C 161 VAL GLN GLU GLU GLY VAL THR ILE VAL PRO LEU LYS ILE SEQRES 10 C 161 TYR PHE ASN ASP ARG GLY ILE ALA LYS VAL GLU ILE ALA SEQRES 11 C 161 VAL ALA ARG GLY LYS LYS LYS TYR ASP LYS ARG GLU ALA SEQRES 12 C 161 ILE LYS LYS ARG GLU MET GLU ARG LYS ILE ARG GLU TYR SEQRES 13 C 161 MET LYS TYR SER ARG HET DIO A 201 6 HET DIO A 202 6 HET DIO A 203 6 HET DIO A 204 6 HET DIO A 205 6 HET SO4 A 206 5 HET SO4 A 207 5 HET SO4 A 208 5 HET GOL A 209 6 HET DIO B 201 6 HET DIO B 202 6 HET SO4 B 203 5 HET SO4 B 204 10 HET GOL B 205 6 HET GOL B 206 6 HET GOL B 207 6 HET DIO C 201 6 HET DIO C 202 6 HET DIO C 203 6 HET SO4 C 204 5 HET SO4 C 205 5 HET GOL C 206 6 HETNAM DIO 1,4-DIETHYLENE DIOXIDE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 DIO 10(C4 H8 O2) FORMUL 9 SO4 7(O4 S 2-) FORMUL 12 GOL 5(C3 H8 O3) FORMUL 26 HOH *168(H2 O) HELIX 1 AA1 ASN A 16 ASP A 22 1 7 HELIX 2 AA2 THR A 36 ASN A 45 1 10 HELIX 3 AA3 GLY A 75 ASN A 79 5 5 HELIX 4 AA4 HIS A 91 VAL A 102 1 12 HELIX 5 AA5 ASN B 16 ASP B 22 1 7 HELIX 6 AA6 THR B 36 ASN B 45 1 10 HELIX 7 AA7 GLY B 75 ASN B 79 5 5 HELIX 8 AA8 HIS B 91 VAL B 102 1 12 HELIX 9 AA9 ASN C 16 ASP C 22 1 7 HELIX 10 AB1 THR C 36 ASN C 45 1 10 HELIX 11 AB2 HIS C 91 VAL C 102 1 12 HELIX 12 AB3 LYS C 133 ILE C 150 1 18 SHEET 1 AA113 PHE A 54 LYS A 58 0 SHEET 2 AA113 GLU A 61 LEU A 65 -1 O LEU A 65 N PHE A 54 SHEET 3 AA113 ARG A 86 LEU A 89 -1 O LEU A 88 N LEU A 62 SHEET 4 AA113 TYR A 23 ILE A 33 -1 N GLY A 32 O LEU A 89 SHEET 5 AA113 ALA A 122 GLY A 131 -1 O ARG A 130 N GLU A 24 SHEET 6 AA113 VAL A 107 PHE A 116 -1 N LEU A 112 O GLU A 125 SHEET 7 AA113 MET A 9 THR A 15 -1 N LYS A 11 O PHE A 116 SHEET 8 AA113 ASN A -1 VAL A 3 -1 N ALA A 0 O VAL A 12 SHEET 9 AA113 TYR C 23 GLY C 32 1 O THR C 28 N MET A 1 SHEET 10 AA113 ALA C 122 GLY C 131 -1 O ARG C 130 N GLU C 24 SHEET 11 AA113 VAL C 107 PHE C 116 -1 N LEU C 112 O GLU C 125 SHEET 12 AA113 MET C 9 THR C 15 -1 N LYS C 11 O PHE C 116 SHEET 13 AA113 MET C 1 VAL C 3 -1 N LYS C 2 O VAL C 10 SHEET 1 AA2 8 MET B 1 VAL B 3 0 SHEET 2 AA2 8 MET B 9 THR B 15 -1 O VAL B 10 N LYS B 2 SHEET 3 AA2 8 VAL B 107 ASN B 117 -1 O PHE B 116 N LYS B 11 SHEET 4 AA2 8 ALA B 122 GLY B 131 -1 O GLU B 125 N LEU B 112 SHEET 5 AA2 8 TYR B 23 ILE B 33 -1 N GLU B 24 O ARG B 130 SHEET 6 AA2 8 ARG B 86 LEU B 89 -1 O LEU B 89 N GLY B 32 SHEET 7 AA2 8 GLU B 61 LEU B 65 -1 N LEU B 64 O ARG B 86 SHEET 8 AA2 8 PHE B 54 LYS B 58 -1 N PHE B 54 O LEU B 65 SHEET 1 AA3 3 PHE C 54 LYS C 58 0 SHEET 2 AA3 3 GLU C 61 LEU C 65 -1 O LEU C 65 N PHE C 54 SHEET 3 AA3 3 ARG C 86 LEU C 88 -1 O ARG C 86 N LEU C 64 SITE 1 AC1 4 HIS A 74 TYR A 78 HIS B 74 DIO B 201 SITE 1 AC2 7 ILE A 33 ILE A 121 GOL A 209 HOH A 310 SITE 2 AC2 7 ILE B 121 DIO B 202 HOH B 316 SITE 1 AC3 6 MET A 9 LYS A 11 ASN A 117 SO4 A 206 SITE 2 AC3 6 HOH A 339 SO4 C 204 SITE 1 AC4 4 PHE A 57 MET A 99 GLN A 103 HOH A 307 SITE 1 AC5 4 THR A 36 GLY A 37 THR B 36 GLY B 37 SITE 1 AC6 4 LYS A 11 ARG A 44 DIO A 203 ARG C 97 SITE 1 AC7 3 LYS A 41 ARG A 44 HOH A 321 SITE 1 AC8 7 GLU A 8 ASN A 117 ASP A 118 ARG A 119 SITE 2 AC8 7 HOH A 317 HIS B 91 SO4 B 204 SITE 1 AC9 7 ILE A 33 LEU A 35 GLY A 120 ILE A 121 SITE 2 AC9 7 ALA A 122 DIO A 202 HOH A 331 SITE 1 AD1 4 TYR A 78 DIO A 201 HOH A 342 GLY B 37 SITE 1 AD2 7 VAL A 34 DIO A 202 ILE B 33 GLY B 120 SITE 2 AD2 7 ILE B 121 ALA B 122 HOH B 303 SITE 1 AD3 3 ARG B 93 ARG B 97 LYS C 41 SITE 1 AD4 10 ASN A 117 ARG A 119 ILE A 121 LYS A 123 SITE 2 AD4 10 SO4 A 208 HOH A 329 ARG B 119 LYS B 123 SITE 3 AD4 10 HOH B 301 HOH B 323 SITE 1 AD5 9 GLY B 5 TRP B 6 THR B 28 GLU B 125 SITE 2 AD5 9 GOL B 207 HOH B 343 VAL C 34 ARG C 84 SITE 3 AD5 9 HOH C 342 SITE 1 AD6 4 ARG B 97 LYS B 101 LYS C 41 ARG C 44 SITE 1 AD7 7 LYS B 2 SER B 4 GLY B 5 LYS B 113 SITE 2 AD7 7 TYR B 115 GLU B 125 GOL B 205 SITE 1 AD8 6 ARG B 93 ARG B 97 HOH B 310 GLY C 37 SITE 2 AD8 6 LYS C 41 VAL C 77 SITE 1 AD9 4 CYS C 55 THR C 108 ILE C 109 HOH C 303 SITE 1 AE1 2 HIS C 91 LYS C 92 SITE 1 AE2 6 MET A 9 DIO A 203 LYS B 92 ARG C 93 SITE 2 AE2 6 ARG C 97 HOH C 305 SITE 1 AE3 4 ARG C 56 LYS C 58 GLU C 105 GLY C 106 SITE 1 AE4 4 LYS A 17 TYR C 20 LYS C 113 GLU C 125 CRYST1 92.539 92.539 307.943 90.00 90.00 120.00 P 65 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010806 0.006239 0.000000 0.00000 SCALE2 0.000000 0.012478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003247 0.00000 MTRIX1 1 -0.879327 0.138451 0.455647 35.58937 1 MTRIX2 1 0.293159 -0.596644 0.747044 -47.86088 1 MTRIX3 1 0.375288 0.790473 0.484057 14.69127 1 MTRIX1 2 0.238438 0.026169 -0.970805 -2.84962 1 MTRIX2 2 -0.543324 -0.824961 -0.155683 -44.04794 1 MTRIX3 2 -0.804951 0.564583 -0.182484 30.25074 1