HEADER TRANSFERASE 03-FEB-21 7LL3
TITLE S-ADENOSYLMETHIONINE SYNTHETASE CO-CRYSTALLIZED WITH UPPNHP
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE SYNTHASE;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: ADOMET SYNTHASE,MAT,METHIONINE ADENOSYLTRANSFERASE;
COMPND 5 EC: 2.5.1.6;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI 908573;
SOURCE 3 ORGANISM_TAXID: 1268998;
SOURCE 4 GENE: METK, HMPREF1611_00479;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28B
KEYWDS S-ADENOSYLMETHIONINE SYNTHETASE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR L.L.TAN,C.J.JACKSON
REVDAT 3 18-OCT-23 7LL3 1 REMARK
REVDAT 2 02-MAR-22 7LL3 1 JRNL
REVDAT 1 31-MAR-21 7LL3 0
JRNL AUTH M.GADE,L.L.TAN,A.M.DAMRY,M.SANDHU,J.S.BROCK,A.DELANEY,
JRNL AUTH 2 A.VILLAR-BRIONES,C.J.JACKSON,P.LAURINO
JRNL TITL SUBSTRATE DYNAMICS CONTRIBUTE TO ENZYMATIC SPECIFICITY IN
JRNL TITL 2 HUMAN AND BACTERIAL METHIONINE ADENOSYLTRANSFERASES.
JRNL REF JACS AU V. 1 2349 2021
JRNL REFN ESSN 2691-3704
JRNL PMID 34977903
JRNL DOI 10.1021/JACSAU.1C00464
REMARK 2
REMARK 2 RESOLUTION. 2.24 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.98
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 63580
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.213
REMARK 3 R VALUE (WORKING SET) : 0.211
REMARK 3 FREE R VALUE : 0.234
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020
REMARK 3 FREE R VALUE TEST SET COUNT : 3190
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 43.9800 - 6.3600 1.00 2944 128 0.2016 0.2107
REMARK 3 2 6.3600 - 5.0500 1.00 2715 174 0.1988 0.2182
REMARK 3 3 5.0500 - 4.4200 1.00 2669 152 0.1661 0.1816
REMARK 3 4 4.4200 - 4.0100 1.00 2698 130 0.1763 0.1892
REMARK 3 5 4.0100 - 3.7300 1.00 2645 146 0.1891 0.2118
REMARK 3 6 3.7200 - 3.5100 1.00 2656 129 0.2105 0.2401
REMARK 3 7 3.5100 - 3.3300 1.00 2634 128 0.2249 0.2620
REMARK 3 8 3.3300 - 3.1800 1.00 2602 151 0.2362 0.2888
REMARK 3 9 3.1800 - 3.0600 1.00 2658 110 0.2459 0.2617
REMARK 3 10 3.0600 - 2.9600 1.00 2607 135 0.2532 0.2286
REMARK 3 11 2.9600 - 2.8600 1.00 2606 131 0.2475 0.2941
REMARK 3 12 2.8600 - 2.7800 1.00 2601 141 0.2406 0.3321
REMARK 3 13 2.7800 - 2.7100 1.00 2570 158 0.2424 0.2663
REMARK 3 14 2.7100 - 2.6400 1.00 2603 128 0.2527 0.2977
REMARK 3 15 2.6400 - 2.5800 1.00 2565 150 0.2530 0.2833
REMARK 3 16 2.5800 - 2.5300 1.00 2588 144 0.2603 0.3183
REMARK 3 17 2.5300 - 2.4800 1.00 2560 149 0.2768 0.3264
REMARK 3 18 2.4800 - 2.4300 1.00 2602 132 0.2839 0.3351
REMARK 3 19 2.4300 - 2.3900 1.00 2573 133 0.2975 0.3565
REMARK 3 20 2.3900 - 2.3500 1.00 2581 147 0.3050 0.3179
REMARK 3 21 2.3500 - 2.3100 1.00 2548 142 0.3044 0.3165
REMARK 3 22 2.3100 - 2.2700 1.00 2591 136 0.3410 0.4117
REMARK 3 23 2.2700 - 2.2400 1.00 2574 116 0.3798 0.4086
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.338
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.383
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 67.56
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.25
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.004 6052
REMARK 3 ANGLE : 0.588 8220
REMARK 3 CHIRALITY : 0.045 911
REMARK 3 PLANARITY : 0.004 1068
REMARK 3 DIHEDRAL : 18.050 2246
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 89 )
REMARK 3 ORIGIN FOR THE GROUP (A): -27.2554 40.2196 16.6878
REMARK 3 T TENSOR
REMARK 3 T11: 0.5607 T22: 0.6724
REMARK 3 T33: 0.4867 T12: 0.0752
REMARK 3 T13: 0.0958 T23: 0.1864
REMARK 3 L TENSOR
REMARK 3 L11: 2.8634 L22: 4.3818
REMARK 3 L33: 1.0728 L12: -0.8810
REMARK 3 L13: -0.0428 L23: 0.1440
REMARK 3 S TENSOR
REMARK 3 S11: 0.0239 S12: 0.4012 S13: 0.0178
REMARK 3 S21: -0.4082 S22: -0.4386 S23: -0.2800
REMARK 3 S31: 0.0386 S32: 0.1771 S33: 0.3925
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 119 )
REMARK 3 ORIGIN FOR THE GROUP (A): -7.7277 44.1545 6.9757
REMARK 3 T TENSOR
REMARK 3 T11: 0.9336 T22: 0.5729
REMARK 3 T33: 0.5924 T12: -0.0166
REMARK 3 T13: 0.1932 T23: 0.1102
REMARK 3 L TENSOR
REMARK 3 L11: 7.1445 L22: 5.7811
REMARK 3 L33: 2.6019 L12: -6.4451
REMARK 3 L13: -4.2669 L23: 3.9853
REMARK 3 S TENSOR
REMARK 3 S11: 0.2929 S12: 0.5968 S13: 0.3027
REMARK 3 S21: -0.7383 S22: 0.0893 S23: -0.7650
REMARK 3 S31: 0.2072 S32: -0.1814 S33: -0.6292
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 259 )
REMARK 3 ORIGIN FOR THE GROUP (A): -29.0721 22.1799 26.7588
REMARK 3 T TENSOR
REMARK 3 T11: 0.6574 T22: 0.6169
REMARK 3 T33: 0.6486 T12: 0.0664
REMARK 3 T13: 0.1946 T23: 0.2187
REMARK 3 L TENSOR
REMARK 3 L11: 2.3844 L22: 2.0234
REMARK 3 L33: 1.5049 L12: 0.4423
REMARK 3 L13: -0.1342 L23: 0.3125
REMARK 3 S TENSOR
REMARK 3 S11: -0.2572 S12: -0.1081 S13: -0.6566
REMARK 3 S21: -0.2916 S22: 0.0038 S23: 0.1458
REMARK 3 S31: 0.4692 S32: -0.0457 S33: 0.2398
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 382 )
REMARK 3 ORIGIN FOR THE GROUP (A): -8.8390 23.3874 10.3562
REMARK 3 T TENSOR
REMARK 3 T11: 0.7861 T22: 0.6900
REMARK 3 T33: 0.6812 T12: 0.0433
REMARK 3 T13: 0.2509 T23: 0.1051
REMARK 3 L TENSOR
REMARK 3 L11: 2.2455 L22: 3.1759
REMARK 3 L33: 3.3020 L12: 0.4024
REMARK 3 L13: -1.7074 L23: -0.7477
REMARK 3 S TENSOR
REMARK 3 S11: -0.1689 S12: 0.2293 S13: -0.4034
REMARK 3 S21: -0.2244 S22: 0.2171 S23: -0.1946
REMARK 3 S31: 0.2121 S32: -0.0935 S33: -0.0691
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 110 )
REMARK 3 ORIGIN FOR THE GROUP (A): -17.8440 49.4372 35.9065
REMARK 3 T TENSOR
REMARK 3 T11: 0.7285 T22: 0.8522
REMARK 3 T33: 0.8542 T12: -0.1157
REMARK 3 T13: -0.2879 T23: 0.3695
REMARK 3 L TENSOR
REMARK 3 L11: 2.3763 L22: 4.5711
REMARK 3 L33: 5.0813 L12: -0.8694
REMARK 3 L13: 0.9311 L23: -2.8203
REMARK 3 S TENSOR
REMARK 3 S11: -0.5527 S12: 0.2681 S13: 0.5844
REMARK 3 S21: 0.6162 S22: -0.5007 S23: -0.8520
REMARK 3 S31: -0.8433 S32: 0.7096 S33: 0.4098
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 383 )
REMARK 3 ORIGIN FOR THE GROUP (A): -3.4580 33.9115 35.2666
REMARK 3 T TENSOR
REMARK 3 T11: 0.4732 T22: 1.2814
REMARK 3 T33: 1.2405 T12: 0.0302
REMARK 3 T13: 0.0979 T23: 0.6664
REMARK 3 L TENSOR
REMARK 3 L11: 2.5483 L22: 4.2452
REMARK 3 L33: 1.6587 L12: -2.1583
REMARK 3 L13: 0.6645 L23: -0.4029
REMARK 3 S TENSOR
REMARK 3 S11: -0.0274 S12: 0.3490 S13: 0.6201
REMARK 3 S21: -0.1244 S22: -0.6961 S23: -1.7266
REMARK 3 S31: 0.0285 S32: 0.9516 S33: 0.2725
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7LL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-21.
REMARK 100 THE DEPOSITION ID IS D_1000254613.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 28-AUG-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON
REMARK 200 BEAMLINE : MX2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63722
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240
REMARK 200 RESOLUTION RANGE LOW (A) : 43.980
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 32.80
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 1P7L
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 67.65
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 8000, 0.1 M BIS-TRIS PH 6.5,
REMARK 280 20% ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE
REMARK 280 292.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290 7555 Y,X,-Z+1/3
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z+2/3
REMARK 290 10555 -Y,-X,-Z+5/6
REMARK 290 11555 -X+Y,Y,-Z+1/2
REMARK 290 12555 X,X-Y,-Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.46967
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 192.93933
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 144.70450
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 241.17417
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.23483
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.46967
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 192.93933
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 241.17417
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 144.70450
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.23483
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 17540 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 51660 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -61.82750
REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 107.08837
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.23483
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 870 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 0
REMARK 465 GLN A 98
REMARK 465 SER A 99
REMARK 465 PRO A 100
REMARK 465 ASP A 101
REMARK 465 ILE A 102
REMARK 465 ASN A 103
REMARK 465 LYS A 383
REMARK 465 MET B 0
REMARK 465 ALA B 1
REMARK 465 LYS B 2
REMARK 465 HIS B 3
REMARK 465 LEU B 4
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OE2 GLU B 55 O HOH B 801 2.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 THR A 47 113.00 -35.31
REMARK 500 ALA A 94 44.59 -140.59
REMARK 500 ASP A 238 113.64 -169.96
REMARK 500 ASP A 238 116.12 -169.96
REMARK 500 THR A 250 -97.49 -115.05
REMARK 500 THR B 47 107.98 -50.17
REMARK 500 LYS B 97 -152.44 -92.05
REMARK 500 ILE B 102 -70.72 -135.18
REMARK 500 VAL B 106 -71.15 -61.22
REMARK 500 ASP B 107 -35.26 83.09
REMARK 500 ASN B 128 30.88 -84.90
REMARK 500 ARG B 147 3.18 -67.52
REMARK 500 GLN B 148 2.14 -65.63
REMARK 500 PRO B 158 -133.75 4.12
REMARK 500 ASP B 173 -68.70 -101.43
REMARK 500 ALA B 182 126.30 -173.28
REMARK 500 GLU B 192 31.82 -87.03
REMARK 500 GLU B 192 37.84 -87.56
REMARK 500 ILE B 193 138.45 -171.66
REMARK 500 LEU B 211 168.92 70.87
REMARK 500 PRO B 212 28.94 -76.46
REMARK 500 GLU B 214 40.83 -77.26
REMARK 500 TRP B 215 0.50 -66.67
REMARK 500 THR B 217 -164.55 -67.24
REMARK 500 LYS B 245 41.62 -145.51
REMARK 500 THR B 250 -103.69 -117.35
REMARK 500 ALA B 356 -76.87 -98.78
REMARK 500 TYR B 357 61.53 -118.44
REMARK 500 THR B 370 44.99 -108.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 706 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 PPK A 705 O1B
REMARK 620 2 GLU B 42 OE2 84.7
REMARK 620 3 HOH B 801 O 123.9 124.3
REMARK 620 N 1 2
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 707 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 PPK A 705 O3G
REMARK 620 2 HOH A 832 O 133.9
REMARK 620 N 1
DBREF 7LL3 A 0 383 UNP V0ZE41 V0ZE41_ECOLX 1 384
DBREF 7LL3 B 0 383 UNP V0ZE41 V0ZE41_ECOLX 1 384
SEQRES 1 A 384 MET ALA LYS HIS LEU PHE THR SER GLU SER VAL SER GLU
SEQRES 2 A 384 GLY HIS PRO ASP LYS ILE ALA ASP GLN ILE SER ASP ALA
SEQRES 3 A 384 VAL LEU ASP ALA ILE LEU GLU GLN ASP PRO LYS ALA ARG
SEQRES 4 A 384 VAL ALA CYS GLU THR TYR VAL LYS THR GLY MET VAL LEU
SEQRES 5 A 384 VAL GLY GLY GLU ILE THR THR SER ALA TRP VAL ASP ILE
SEQRES 6 A 384 GLU GLU ILE THR ARG ASN THR VAL ARG GLU ILE GLY TYR
SEQRES 7 A 384 VAL HIS SER ASP MET GLY PHE ASP ALA ASN SER CYS ALA
SEQRES 8 A 384 VAL LEU SER ALA ILE GLY LYS GLN SER PRO ASP ILE ASN
SEQRES 9 A 384 GLN GLY VAL ASP ARG ALA ASP PRO LEU GLU GLN GLY ALA
SEQRES 10 A 384 GLY ASP GLN GLY LEU MET PHE GLY TYR ALA THR ASN GLU
SEQRES 11 A 384 THR ASP VAL LEU MET PRO ALA PRO ILE THR TYR ALA HIS
SEQRES 12 A 384 ARG LEU VAL GLN ARG GLN ALA GLU VAL ARG LYS ASN GLY
SEQRES 13 A 384 THR LEU PRO TRP LEU ARG PRO ASP ALA LYS SER GLN VAL
SEQRES 14 A 384 THR PHE GLN TYR ASP ASP GLY LYS ILE VAL GLY ILE ASP
SEQRES 15 A 384 ALA VAL VAL LEU SER THR GLN HIS SER GLU GLU ILE ASP
SEQRES 16 A 384 GLN LYS SER LEU GLN GLU ALA VAL MET GLU GLU ILE ILE
SEQRES 17 A 384 LYS PRO ILE LEU PRO ALA GLU TRP LEU THR SER ALA THR
SEQRES 18 A 384 LYS PHE PHE ILE ASN PRO THR GLY ARG PHE VAL ILE GLY
SEQRES 19 A 384 GLY PRO MET GLY ASP CYS GLY LEU THR GLY ARG LYS ILE
SEQRES 20 A 384 ILE VAL ASP THR TYR GLY GLY MET ALA ARG HIS GLY GLY
SEQRES 21 A 384 GLY ALA PHE SER GLY LYS ASP PRO SER LYS VAL ASP ARG
SEQRES 22 A 384 SER ALA ALA TYR ALA ALA ARG TYR VAL ALA LYS ASN ILE
SEQRES 23 A 384 VAL ALA ALA GLY LEU ALA ASP ARG CYS GLU ILE GLN VAL
SEQRES 24 A 384 SER TYR ALA ILE GLY VAL ALA GLU PRO THR SER ILE MET
SEQRES 25 A 384 VAL GLU THR PHE GLY THR GLU LYS VAL PRO SER GLU GLN
SEQRES 26 A 384 LEU THR LEU LEU VAL ARG GLU PHE PHE ASP LEU ARG PRO
SEQRES 27 A 384 TYR GLY LEU ILE GLN MET LEU ASP LEU LEU HIS PRO ILE
SEQRES 28 A 384 TYR LYS GLU THR ALA ALA TYR GLY HIS PHE GLY ARG GLU
SEQRES 29 A 384 HIS PHE PRO TRP GLU LYS THR ASP LYS ALA GLN LEU LEU
SEQRES 30 A 384 ARG ASP ALA ALA GLY LEU LYS
SEQRES 1 B 384 MET ALA LYS HIS LEU PHE THR SER GLU SER VAL SER GLU
SEQRES 2 B 384 GLY HIS PRO ASP LYS ILE ALA ASP GLN ILE SER ASP ALA
SEQRES 3 B 384 VAL LEU ASP ALA ILE LEU GLU GLN ASP PRO LYS ALA ARG
SEQRES 4 B 384 VAL ALA CYS GLU THR TYR VAL LYS THR GLY MET VAL LEU
SEQRES 5 B 384 VAL GLY GLY GLU ILE THR THR SER ALA TRP VAL ASP ILE
SEQRES 6 B 384 GLU GLU ILE THR ARG ASN THR VAL ARG GLU ILE GLY TYR
SEQRES 7 B 384 VAL HIS SER ASP MET GLY PHE ASP ALA ASN SER CYS ALA
SEQRES 8 B 384 VAL LEU SER ALA ILE GLY LYS GLN SER PRO ASP ILE ASN
SEQRES 9 B 384 GLN GLY VAL ASP ARG ALA ASP PRO LEU GLU GLN GLY ALA
SEQRES 10 B 384 GLY ASP GLN GLY LEU MET PHE GLY TYR ALA THR ASN GLU
SEQRES 11 B 384 THR ASP VAL LEU MET PRO ALA PRO ILE THR TYR ALA HIS
SEQRES 12 B 384 ARG LEU VAL GLN ARG GLN ALA GLU VAL ARG LYS ASN GLY
SEQRES 13 B 384 THR LEU PRO TRP LEU ARG PRO ASP ALA LYS SER GLN VAL
SEQRES 14 B 384 THR PHE GLN TYR ASP ASP GLY LYS ILE VAL GLY ILE ASP
SEQRES 15 B 384 ALA VAL VAL LEU SER THR GLN HIS SER GLU GLU ILE ASP
SEQRES 16 B 384 GLN LYS SER LEU GLN GLU ALA VAL MET GLU GLU ILE ILE
SEQRES 17 B 384 LYS PRO ILE LEU PRO ALA GLU TRP LEU THR SER ALA THR
SEQRES 18 B 384 LYS PHE PHE ILE ASN PRO THR GLY ARG PHE VAL ILE GLY
SEQRES 19 B 384 GLY PRO MET GLY ASP CYS GLY LEU THR GLY ARG LYS ILE
SEQRES 20 B 384 ILE VAL ASP THR TYR GLY GLY MET ALA ARG HIS GLY GLY
SEQRES 21 B 384 GLY ALA PHE SER GLY LYS ASP PRO SER LYS VAL ASP ARG
SEQRES 22 B 384 SER ALA ALA TYR ALA ALA ARG TYR VAL ALA LYS ASN ILE
SEQRES 23 B 384 VAL ALA ALA GLY LEU ALA ASP ARG CYS GLU ILE GLN VAL
SEQRES 24 B 384 SER TYR ALA ILE GLY VAL ALA GLU PRO THR SER ILE MET
SEQRES 25 B 384 VAL GLU THR PHE GLY THR GLU LYS VAL PRO SER GLU GLN
SEQRES 26 B 384 LEU THR LEU LEU VAL ARG GLU PHE PHE ASP LEU ARG PRO
SEQRES 27 B 384 TYR GLY LEU ILE GLN MET LEU ASP LEU LEU HIS PRO ILE
SEQRES 28 B 384 TYR LYS GLU THR ALA ALA TYR GLY HIS PHE GLY ARG GLU
SEQRES 29 B 384 HIS PHE PRO TRP GLU LYS THR ASP LYS ALA GLN LEU LEU
SEQRES 30 B 384 ARG ASP ALA ALA GLY LEU LYS
HET EDO A 701 4
HET EDO A 702 4
HET EDO A 703 4
HET UNP A 704 29
HET PPK A 705 14
HET MG A 706 1
HET MG A 707 1
HET EDO B 701 4
HET EDO B 702 4
HET PPK B 703 13
HETNAM EDO 1,2-ETHANEDIOL
HETNAM UNP 5'-O-[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOAMINO)
HETNAM 2 UNP PHOSPHORYL]OXY}PHOSPHORYL]URIDINE
HETNAM PPK (DIPHOSPHONO)AMINOPHOSPHONIC ACID
HETNAM MG MAGNESIUM ION
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 EDO 5(C2 H6 O2)
FORMUL 6 UNP C9 H16 N3 O14 P3
FORMUL 7 PPK 2(H6 N O9 P3)
FORMUL 8 MG 2(MG 2+)
FORMUL 13 HOH *133(H2 O)
HELIX 1 AA1 HIS A 14 GLU A 32 1 19
HELIX 2 AA2 ASP A 63 GLY A 76 1 14
HELIX 3 AA3 SER A 80 GLY A 83 5 4
HELIX 4 AA4 ASP A 110 GLN A 114 5 5
HELIX 5 AA5 PRO A 135 ASN A 154 1 20
HELIX 6 AA6 ASP A 194 ILE A 206 1 13
HELIX 7 AA7 PRO A 212 LEU A 216 5 5
HELIX 8 AA8 LYS A 269 ALA A 288 1 20
HELIX 9 AA9 PRO A 321 PHE A 333 1 13
HELIX 10 AB1 ARG A 336 ASP A 345 1 10
HELIX 11 AB2 TYR A 351 ALA A 356 5 6
HELIX 12 AB3 PHE A 365 LYS A 369 5 5
HELIX 13 AB4 LYS A 372 ALA A 379 1 8
HELIX 14 AB5 HIS B 14 ASP B 34 1 21
HELIX 15 AB6 ASP B 63 GLY B 76 1 14
HELIX 16 AB7 SER B 80 GLY B 83 5 4
HELIX 17 AB8 ASP B 110 GLN B 114 5 5
HELIX 18 AB9 PRO B 135 ARG B 147 1 13
HELIX 19 AC1 GLN B 148 ARG B 152 5 5
HELIX 20 AC2 ASP B 194 GLU B 205 1 12
HELIX 21 AC3 LYS B 245 THR B 250 1 6
HELIX 22 AC4 LYS B 269 ALA B 288 1 20
HELIX 23 AC5 PRO B 321 PHE B 333 1 13
HELIX 24 AC6 ARG B 336 ASP B 345 1 10
HELIX 25 AC7 PHE B 365 LYS B 369 5 5
HELIX 26 AC8 LYS B 372 GLY B 381 1 10
SHEET 1 AA1 4 HIS A 3 VAL A 10 0
SHEET 2 AA1 4 LEU A 160 ASP A 173 -1 O TYR A 172 N HIS A 3
SHEET 3 AA1 4 LYS A 176 HIS A 189 -1 O GLN A 188 N ASP A 163
SHEET 4 AA1 4 LYS A 221 ILE A 224 1 O PHE A 223 N VAL A 183
SHEET 1 AA2 4 ALA A 90 GLY A 96 0
SHEET 2 AA2 4 MET A 49 THR A 57 1 N VAL A 52 O ALA A 94
SHEET 3 AA2 4 ARG A 38 LYS A 46 -1 N GLU A 42 O GLY A 53
SHEET 4 AA2 4 GLY A 240 LEU A 241 -1 O GLY A 240 N VAL A 45
SHEET 1 AA3 2 VAL A 78 HIS A 79 0
SHEET 2 AA3 2 PHE A 84 ASP A 85 -1 O PHE A 84 N HIS A 79
SHEET 1 AA4 3 GLY A 120 THR A 127 0
SHEET 2 AA4 3 ARG A 293 TYR A 300 -1 O VAL A 298 N MET A 122
SHEET 3 AA4 3 SER A 309 GLU A 313 -1 O GLU A 313 N GLU A 295
SHEET 1 AA5 4 THR B 6 VAL B 10 0
SHEET 2 AA5 4 ALA B 164 TYR B 172 -1 O SER B 166 N SER B 9
SHEET 3 AA5 4 ILE B 177 THR B 187 -1 O VAL B 184 N GLN B 167
SHEET 4 AA5 4 LEU B 216 ILE B 224 1 O PHE B 223 N VAL B 183
SHEET 1 AA6 4 ALA B 90 GLY B 96 0
SHEET 2 AA6 4 MET B 49 THR B 57 1 N VAL B 52 O LEU B 92
SHEET 3 AA6 4 ARG B 38 LYS B 46 -1 N TYR B 44 O LEU B 51
SHEET 4 AA6 4 GLY B 240 LEU B 241 -1 O GLY B 240 N VAL B 45
SHEET 1 AA7 2 VAL B 78 HIS B 79 0
SHEET 2 AA7 2 PHE B 84 ASP B 85 -1 O PHE B 84 N HIS B 79
SHEET 1 AA8 3 GLY B 120 THR B 127 0
SHEET 2 AA8 3 ARG B 293 TYR B 300 -1 O VAL B 298 N MET B 122
SHEET 3 AA8 3 SER B 309 GLU B 313 -1 O GLU B 313 N GLU B 295
LINK O1B PPK A 705 MG MG A 706 1555 1555 2.56
LINK O3G PPK A 705 MG MG A 707 1555 1555 2.95
LINK MG MG A 706 OE2 GLU B 42 1555 1555 2.78
LINK MG MG A 706 O HOH B 801 1555 1555 2.48
LINK MG MG A 707 O HOH A 832 1555 1555 2.91
CRYST1 123.655 123.655 289.409 90.00 90.00 120.00 P 61 2 2 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008087 0.004669 0.000000 0.00000
SCALE2 0.000000 0.009338 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003455 0.00000