HEADER LIGASE 11-FEB-21 7LP4 TITLE STRUCTURE OF NEDD4L WW3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE NEDD4-LIKE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WW 3 DOMAIN, RESIDUES 493-539; COMPND 5 SYNONYM: HECT-TYPE E3 UBIQUITIN TRANSFERASE NED4L,NEDD4.2,NEDD4-2; COMPND 6 EC: 2.3.2.26; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEDD4L, KIAA0439, NEDL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PPXY BINDING, E3 UBIQUITIN LIGASE, NEDD4L, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.L.ALAM,A.ALIAN,T.THOMPSON,L.RHEINEMANN,B.F.VOLKMAN,F.C.PETERSON, AUTHOR 2 W.I.SUNDQUIST REVDAT 4 15-MAY-24 7LP4 1 REMARK REVDAT 3 14-JUN-23 7LP4 1 REMARK REVDAT 2 25-AUG-21 7LP4 1 JRNL REVDAT 1 28-JUL-21 7LP4 0 JRNL AUTH L.RHEINEMANN,T.THOMPSON,G.MERCENNE,E.L.PAINE,F.C.PETERSON, JRNL AUTH 2 B.F.VOLKMAN,S.L.ALAM,A.ALIAN,W.I.SUNDQUIST JRNL TITL INTERACTIONS BETWEEN AMOT PPXY MOTIFS AND NEDD4L WW DOMAINS JRNL TITL 2 FUNCTION IN HIV-1 RELEASE. JRNL REF J.BIOL.CHEM. V. 297 00975 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34284061 JRNL DOI 10.1016/J.JBC.2021.100975 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, X-PLOR NIH REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000253828. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] E3 REMARK 210 UBIQUITIN-PROTEIN LIGASE NEDD4- REMARK 210 LIKE, 20 MM SODIUM PHOSPHATE, 50 REMARK 210 MM SODIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O; 1 MM [U-100% 15N] E3 REMARK 210 UBIQUITIN-PROTEIN LIGASE NEDD4- REMARK 210 LIKE, 20 MM SODIUM PHOSPHATE, 50 REMARK 210 MM SODIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D HCCH-TOCSY; REMARK 210 3D HNCO; 3D HN(CO)CA; 3D HNHA; REMARK 210 3D HNHB; 3D C(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, FELIX 2007, SPARKY REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 537 -27.62 171.71 REMARK 500 3 LYS A 521 63.61 63.03 REMARK 500 3 GLU A 526 100.50 -46.88 REMARK 500 3 ARG A 537 -50.47 -148.12 REMARK 500 4 LYS A 521 64.09 63.36 REMARK 500 5 MET A 536 95.03 65.79 REMARK 500 6 LYS A 521 63.30 72.15 REMARK 500 6 GLU A 526 99.99 -42.22 REMARK 500 7 THR A 495 94.50 68.57 REMARK 500 7 LYS A 521 63.53 63.43 REMARK 500 7 MET A 536 112.81 -164.05 REMARK 500 7 ARG A 537 95.91 45.66 REMARK 500 8 LYS A 521 64.50 60.28 REMARK 500 8 ARG A 537 -94.03 -137.20 REMARK 500 8 SER A 538 120.59 161.82 REMARK 500 10 LYS A 521 63.90 60.38 REMARK 500 11 LYS A 521 64.19 62.76 REMARK 500 12 LYS A 521 63.24 63.46 REMARK 500 12 MET A 536 96.05 65.37 REMARK 500 13 LYS A 521 63.60 61.66 REMARK 500 14 HIS A 535 -72.56 -104.82 REMARK 500 15 LYS A 521 64.90 65.04 REMARK 500 16 VAL A 494 109.05 -47.20 REMARK 500 16 LYS A 521 63.33 60.56 REMARK 500 16 GLU A 526 98.55 -42.43 REMARK 500 17 MET A 536 -176.82 66.45 REMARK 500 18 LYS A 521 63.22 68.33 REMARK 500 19 LYS A 521 64.49 66.50 REMARK 500 20 LYS A 521 63.87 68.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30857 RELATED DB: BMRB REMARK 900 STRUCTURE OF NEDD4L WW3 DOMAIN DBREF 7LP4 A 493 539 UNP Q96PU5 NED4L_HUMAN 493 539 SEQRES 1 A 47 LYS VAL THR GLN SER PHE LEU PRO PRO GLY TRP GLU MET SEQRES 2 A 47 ARG ILE ALA PRO ASN GLY ARG PRO PHE PHE ILE ASP HIS SEQRES 3 A 47 ASN THR LYS THR THR THR TRP GLU ASP PRO ARG LEU LYS SEQRES 4 A 47 PHE PRO VAL HIS MET ARG SER LYS SHEET 1 AA1 3 TRP A 503 ILE A 507 0 SHEET 2 AA1 3 PRO A 513 ASP A 517 -1 O PHE A 514 N ARG A 506 SHEET 3 AA1 3 THR A 522 THR A 524 -1 O THR A 524 N PHE A 515 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1