HEADER LIGASE 11-FEB-21 7LP5 TITLE STRUCTURE OF NEDD4L WW3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANGIOMOTIN,E3 UBIQUITIN-PROTEIN LIGASE NEDD4-LIKE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HECT-TYPE E3 UBIQUITIN TRANSFERASE NED4L,NEDD4.2,NEDD4-2; COMPND 5 EC: 2.3.2.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AMOT, KIAA1071, NEDD4L, KIAA0439, NEDL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS WW DOMAIN, PPXY BINDING, E3 UBIQUITIN LIGASE, NEDD4L, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.L.ALAM,A.ALIAN,T.THOMPSON,L.RHEINEMANN,B.F.VOLKMAN,F.C.PETERSON, AUTHOR 2 W.I.SUNDQUIST REVDAT 3 15-MAY-24 7LP5 1 REMARK REVDAT 2 25-AUG-21 7LP5 1 JRNL REVDAT 1 28-JUL-21 7LP5 0 JRNL AUTH L.RHEINEMANN,T.THOMPSON,G.MERCENNE,E.L.PAINE,F.C.PETERSON, JRNL AUTH 2 B.F.VOLKMAN,S.L.ALAM,A.ALIAN,W.I.SUNDQUIST JRNL TITL INTERACTIONS BETWEEN AMOT PPXY MOTIFS AND NEDD4L WW DOMAINS JRNL TITL 2 FUNCTION IN HIV-1 RELEASE. JRNL REF J.BIOL.CHEM. V. 297 00975 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34284061 JRNL DOI 10.1016/J.JBC.2021.100975 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, X-PLOR NIH REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000252843. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 ANGIOMOTIN,E3 UBIQUITIN-PROTEIN REMARK 210 LIGASE NEDD4-LIKE FUSION, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 1 MM REMARK 210 [U-100% 15N] ANGIOMOTIN,E3 REMARK 210 UBIQUITIN-PROTEIN LIGASE NEDD4- REMARK 210 LIKE FUSION, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D C(CO)NH; 3D H(CCO)NH; REMARK 210 3D HCCH-TOCSY; 3D HNHB; 3D HNHA; REMARK 210 3D CBCA(CO)NH; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, FELIX 2007, SPARKY REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 206 -60.57 -129.61 REMARK 500 1 THR A 495 -167.04 178.17 REMARK 500 1 PRO A 533 -147.68 -77.14 REMARK 500 1 VAL A 534 104.25 -56.70 REMARK 500 2 GLN A 102 74.77 52.88 REMARK 500 2 ASN A 103 102.88 178.17 REMARK 500 2 SER A 206 -39.16 -152.09 REMARK 500 2 LEU A 499 150.67 -45.82 REMARK 500 2 PRO A 533 37.46 -81.71 REMARK 500 2 MET A 536 -86.49 -142.54 REMARK 500 3 ASN A 103 119.13 177.64 REMARK 500 3 LYS A 521 64.04 65.53 REMARK 500 4 SER A 206 29.96 -79.09 REMARK 500 5 GLN A 496 90.25 63.83 REMARK 500 5 PRO A 533 34.94 -80.28 REMARK 500 6 GLN A 496 158.66 171.70 REMARK 500 6 SER A 497 -33.97 -169.82 REMARK 500 6 MET A 536 86.39 44.27 REMARK 500 7 GLU A 106 101.51 -54.08 REMARK 500 7 VAL A 494 -162.84 -122.91 REMARK 500 7 LYS A 521 66.38 60.66 REMARK 500 8 GLN A 102 66.34 64.42 REMARK 500 8 PRO A 533 -150.22 -79.84 REMARK 500 9 SER A 497 105.82 -161.28 REMARK 500 9 PRO A 533 -149.49 -95.39 REMARK 500 10 ASN A 103 101.06 -174.48 REMARK 500 10 GLU A 106 99.76 -69.11 REMARK 500 10 LYS A 521 65.74 63.65 REMARK 500 11 PHE A 498 65.05 -100.06 REMARK 500 11 PRO A 533 32.35 -93.65 REMARK 500 12 SER A 206 20.07 -68.95 REMARK 500 12 SER A 538 -71.55 -143.42 REMARK 500 13 ASN A 103 20.84 -145.28 REMARK 500 13 SER A 206 -45.28 74.89 REMARK 500 13 MET A 536 108.28 178.52 REMARK 500 14 GLN A 496 85.98 68.85 REMARK 500 14 LYS A 521 66.40 63.87 REMARK 500 14 SER A 538 81.32 57.22 REMARK 500 15 GLN A 102 -70.48 -68.74 REMARK 500 15 SER A 206 -31.80 71.31 REMARK 500 15 VAL A 534 106.01 -59.52 REMARK 500 16 LYS A 521 65.44 64.85 REMARK 500 16 PRO A 533 -143.20 -86.44 REMARK 500 17 LYS A 521 65.60 62.98 REMARK 500 17 ARG A 529 -7.52 -59.63 REMARK 500 18 LYS A 493 26.23 -74.47 REMARK 500 18 SER A 538 -37.63 178.04 REMARK 500 19 SER A 206 -70.69 -163.82 REMARK 500 19 LYS A 493 59.72 -113.83 REMARK 500 19 LYS A 521 65.99 61.55 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 14 ARG A 529 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30858 RELATED DB: BMRB REMARK 900 STRUCTURE OF NEDD4L WW3 DOMAIN DBREF 7LP5 A 101 115 UNP Q4VCS5 AMOT_HUMAN 100 114 DBREF 7LP5 A 493 539 UNP Q96PU5 NED4L_HUMAN 493 539 SEQADV 7LP5 GLY A 201 UNP Q4VCS5 LINKER SEQADV 7LP5 GLY A 202 UNP Q4VCS5 LINKER SEQADV 7LP5 GLY A 203 UNP Q4VCS5 LINKER SEQADV 7LP5 GLY A 204 UNP Q4VCS5 LINKER SEQADV 7LP5 GLY A 205 UNP Q4VCS5 LINKER SEQADV 7LP5 SER A 206 UNP Q4VCS5 LINKER SEQRES 1 A 68 MET GLN ASN ASN GLU GLU LEU PRO THR TYR GLU GLU ALA SEQRES 2 A 68 LYS VAL GLY GLY GLY GLY GLY SER LYS VAL THR GLN SER SEQRES 3 A 68 PHE LEU PRO PRO GLY TRP GLU MET ARG ILE ALA PRO ASN SEQRES 4 A 68 GLY ARG PRO PHE PHE ILE ASP HIS ASN THR LYS THR THR SEQRES 5 A 68 THR TRP GLU ASP PRO ARG LEU LYS PHE PRO VAL HIS MET SEQRES 6 A 68 ARG SER LYS HELIX 1 AA1 THR A 109 LYS A 114 1 6 HELIX 2 AA2 ASP A 527 LYS A 531 5 5 SHEET 1 AA1 3 TRP A 503 ILE A 507 0 SHEET 2 AA1 3 PRO A 513 ASP A 517 -1 O ILE A 516 N GLU A 504 SHEET 3 AA1 3 THR A 522 THR A 524 -1 O THR A 522 N ASP A 517 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1