HEADER VIRAL PROTEIN, HYDROLASE 27-FEB-21 7LW6 TITLE THE CRYSTAL STRUCTURE OF THE 2009/H1N1/CALIFORNIA PA ENDONUCLEASE I38T TITLE 2 MUTANT IN COMPLEX WITH RALTEGRAVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 3 ORGANISM_TAXID: 655278; SOURCE 4 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: INFLUENZA A VIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 11320 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,P.J.SLAVISH,S.W.WHITE,Z.RANKOVIK REVDAT 3 25-OCT-23 7LW6 1 REMARK REVDAT 2 29-MAR-23 7LW6 1 JRNL REVDAT 1 26-MAY-21 7LW6 0 JRNL AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, JRNL AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, JRNL AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, JRNL AUTH 4 S.W.WHITE JRNL TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF JRNL TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS JRNL TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE JRNL TITL 4 RESISTANCE POTENTIAL. JRNL REF EUR.J.MED.CHEM. V. 247 15035 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36603507 JRNL DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 11140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3500 - 3.7800 0.97 2724 142 0.1917 0.2448 REMARK 3 2 3.7800 - 3.0000 0.99 2643 140 0.2434 0.2826 REMARK 3 3 3.0000 - 2.6200 1.00 2654 104 0.2872 0.3540 REMARK 3 4 2.6200 - 2.3800 0.99 2595 138 0.2479 0.2952 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.257 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.606 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1539 REMARK 3 ANGLE : 0.873 2084 REMARK 3 CHIRALITY : 0.040 218 REMARK 3 PLANARITY : 0.003 264 REMARK 3 DIHEDRAL : 18.560 558 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1051 19.1613 3.6017 REMARK 3 T TENSOR REMARK 3 T11: 1.0095 T22: 0.7761 REMARK 3 T33: 0.5370 T12: 0.0102 REMARK 3 T13: 0.2032 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 9.5777 L22: 5.8209 REMARK 3 L33: 2.3250 L12: 1.4778 REMARK 3 L13: 0.7581 L23: 3.3155 REMARK 3 S TENSOR REMARK 3 S11: 0.4030 S12: 0.9136 S13: -0.6047 REMARK 3 S21: 0.5184 S22: -0.3292 S23: -0.0842 REMARK 3 S31: 1.1918 S32: 0.2169 S33: -0.0935 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9473 22.3557 19.5948 REMARK 3 T TENSOR REMARK 3 T11: 0.7278 T22: 0.6054 REMARK 3 T33: 0.5351 T12: 0.0262 REMARK 3 T13: 0.1885 T23: 0.1267 REMARK 3 L TENSOR REMARK 3 L11: 5.4518 L22: 2.7938 REMARK 3 L33: 1.9474 L12: -0.0823 REMARK 3 L13: 2.2911 L23: -0.1607 REMARK 3 S TENSOR REMARK 3 S11: 0.1066 S12: -0.0347 S13: 0.0767 REMARK 3 S21: 0.3404 S22: -0.1672 S23: -0.1034 REMARK 3 S31: 0.5559 S32: 0.0961 S33: 0.0568 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8743 17.7061 24.0347 REMARK 3 T TENSOR REMARK 3 T11: 0.9122 T22: 0.6106 REMARK 3 T33: 0.6640 T12: -0.1451 REMARK 3 T13: 0.2338 T23: 0.2187 REMARK 3 L TENSOR REMARK 3 L11: 6.5780 L22: 4.6800 REMARK 3 L33: 3.9983 L12: 0.6915 REMARK 3 L13: 2.9014 L23: 0.0352 REMARK 3 S TENSOR REMARK 3 S11: 0.2765 S12: -1.4934 S13: -0.7620 REMARK 3 S21: -0.1470 S22: -0.1648 S23: 0.4073 REMARK 3 S31: 0.5640 S32: -0.7133 S33: -0.1111 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9814 20.0968 23.2697 REMARK 3 T TENSOR REMARK 3 T11: 0.8519 T22: 0.6408 REMARK 3 T33: 0.5920 T12: -0.2604 REMARK 3 T13: 0.2525 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 4.2079 L22: 0.9703 REMARK 3 L33: 6.2354 L12: -0.6298 REMARK 3 L13: 2.2387 L23: -0.1239 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: -0.5382 S13: -0.1570 REMARK 3 S21: 0.2952 S22: -0.2309 S23: 0.0272 REMARK 3 S31: 0.8232 S32: -0.5262 S33: 0.0462 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LW6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11154 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 74.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.96100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.75750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.75750 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.90100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.75750 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.75750 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.90100 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.75750 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.75750 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.90100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.75750 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.75750 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.90100 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.75750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.75750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.90100 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.75750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.75750 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.90100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.75750 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.75750 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.90100 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.75750 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.75750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.90100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -238.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.51500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.51500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 89.51500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 89.51500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 89.51500 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 89.51500 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 89.51500 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 89.51500 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 GLU A 195 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 19 CE NZ REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 ARG A 125 CD NE CZ NH1 NH2 REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 134 CD CE NZ REMARK 470 LYS A 137 CE NZ REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 138 -74.61 -62.01 REMARK 500 SER A 140 -106.57 -82.25 REMARK 500 GLU A 141 -71.10 -156.25 REMARK 500 LYS A 158 19.11 58.46 REMARK 500 THR A 162 -68.79 62.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 RLT A 201 REMARK 610 QQ4 A 202 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 92.8 REMARK 620 3 GLU A 119 OE1 167.9 82.0 REMARK 620 4 ILE A 120 O 74.6 85.4 94.0 REMARK 620 5 RLT A 201 OAG 82.5 167.7 104.7 104.1 REMARK 620 6 RLT A 201 OAH 91.0 101.4 100.8 164.4 67.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 204 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 111.9 REMARK 620 3 RLT A 201 OAE 118.0 101.3 REMARK 620 N 1 2 DBREF 7LW6 A 1 50 UNP C6H0Y9 C6H0Y9_9INFA 1 50 DBREF 7LW6 A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 7LW6 MET A -19 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 GLY A -18 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 SER A -17 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 SER A -16 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 HIS A -15 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 HIS A -14 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 HIS A -13 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 HIS A -12 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 HIS A -11 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 HIS A -10 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 SER A -9 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 SER A -8 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 GLY A -7 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 LEU A -6 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 VAL A -5 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 PRO A -4 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 ARG A -3 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 GLY A -2 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 SER A -1 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 HIS A 0 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LW6 THR A 38 UNP C6H0Y9 ILE 38 ENGINEERED MUTATION SEQADV 7LW6 GLY A 51 UNP C6H0Y9 LINKER SEQADV 7LW6 GLY A 52 UNP C6H0Y9 LINKER SEQADV 7LW6 SER A 53 UNP C6H0Y9 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET RLT A 201 24 HET QQ4 A 202 41 HET MN A 203 1 HET MN A 204 1 HET SO4 A 205 5 HETNAM RLT N-(4-FLUOROBENZYL)-5-HYDROXY-1-METHYL-2-(1-METHYL-1- HETNAM 2 RLT {[(5-METHYL-1,3,4-OXADIAZOL-2-YL) HETNAM 3 RLT CARBONYL]AMINO}ETHYL)-6-OXO-1,6-DI HYDROPYRIMIDINE-4- HETNAM 4 RLT CARBOXAMIDE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETSYN RLT RALTEGRAVIR, MK0518 HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 RLT C20 H21 F N6 O5 FORMUL 3 QQ4 C36 H56 N6 O6 FORMUL 4 MN 2(MN 2+) FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *19(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 ASP A 50 1 20 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 203 1555 1555 2.38 LINK OE1 GLU A 80 MN MN A 204 1555 1555 2.30 LINK OD2 ASP A 108 MN MN A 203 1555 1555 2.42 LINK OD1 ASP A 108 MN MN A 204 1555 1555 1.92 LINK OE1 GLU A 119 MN MN A 203 1555 1555 2.53 LINK O ILE A 120 MN MN A 203 1555 1555 2.12 LINK OAG RLT A 201 MN MN A 203 1555 1555 2.78 LINK OAH RLT A 201 MN MN A 203 1555 1555 1.76 LINK OAE RLT A 201 MN MN A 204 1555 1555 1.90 CRYST1 89.515 89.515 133.802 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011171 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007474 0.00000