HEADER PROTEIN BINDING 03-MAR-21 7LXE TITLE ENAH EVH1 DOMAIN BOUND TO PEPTIDE FROM ABI1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ENABLED HOMOLOG,ABL INTERACTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ABL-INTERACTOR 1 VARIANT 21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ENAH, ABI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, CYTOSKELETON, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.E.KEATING,R.A.GRANT,T.H.HWANG REVDAT 3 18-OCT-23 7LXE 1 REMARK REVDAT 2 10-AUG-22 7LXE 1 JRNL REVDAT 1 19-JAN-22 7LXE 0 JRNL AUTH T.HWANG,S.S.PARKER,S.M.HILL,R.A.GRANT,M.W.ILUNGA, JRNL AUTH 2 V.SIVARAMAN,G.MOUNEIMNE,A.E.KEATING JRNL TITL NATIVE PROLINE-RICH MOTIFS EXPLOIT SEQUENCE CONTEXT TO JRNL TITL 2 TARGET ACTIN-REMODELING ENA/VASP PROTEIN ENAH. JRNL REF ELIFE V. 11 2022 JRNL REFN ESSN 2050-084X JRNL PMID 35076015 JRNL DOI 10.7554/ELIFE.70680 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 11948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4200 - 3.9000 1.00 1293 144 0.1873 0.2012 REMARK 3 2 3.9000 - 3.1000 0.99 1221 134 0.2422 0.2863 REMARK 3 3 3.1000 - 2.7100 0.99 1202 134 0.2941 0.3117 REMARK 3 4 2.7100 - 2.4600 0.99 1195 133 0.2776 0.3293 REMARK 3 5 2.4600 - 2.2800 0.99 1169 131 0.2811 0.3485 REMARK 3 6 2.2800 - 2.1500 0.98 1179 131 0.3618 0.4128 REMARK 3 7 2.1500 - 2.0400 0.99 1185 131 0.4168 0.3963 REMARK 3 8 2.0400 - 1.9500 0.99 1185 132 0.4703 0.4708 REMARK 3 9 1.9500 - 1.8800 0.95 1123 126 0.5853 0.7056 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 45.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000254914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12109 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 66.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 2.72600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EVH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.5, 2.9 M REMARK 280 SODIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.08350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.08350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.03350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.74250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.03350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.74250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.08350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.03350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.74250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.08350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.03350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.74250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 114 REMARK 465 GLY A 115 REMARK 465 SER A 116 REMARK 465 GLY A 117 REMARK 465 PHE A 118 REMARK 465 ASP A 119 REMARK 465 VAL A 130 REMARK 465 ASP A 131 REMARK 465 TYR A 132 REMARK 465 GLU A 133 REMARK 465 ASP A 134 REMARK 465 GLU A 135 REMARK 465 GLU A 136 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 VAL A 139 REMARK 465 VAL A 140 REMARK 465 GLN A 141 REMARK 465 TYR A 142 REMARK 465 ASN A 143 REMARK 465 ASP A 144 REMARK 465 PRO A 145 REMARK 465 TYR A 146 REMARK 465 ALA A 147 REMARK 465 ASP A 148 REMARK 465 GLY A 149 REMARK 465 ASP A 150 REMARK 465 PRO A 151 REMARK 465 ALA A 152 REMARK 465 TRP A 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 82 CG OD1 OD2 REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 61 82.99 -164.57 REMARK 500 ALA A 83 -145.24 -116.99 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7LXE A 1 111 UNP A0A075B6E5_HUMAN DBREF2 7LXE A A0A075B6E5 1 111 DBREF 7LXE A 118 153 UNP B6VEX4 B6VEX4_HUMAN 292 327 SEQADV 7LXE SER A -2 UNP A0A075B6E EXPRESSION TAG SEQADV 7LXE ASN A -1 UNP A0A075B6E EXPRESSION TAG SEQADV 7LXE ALA A 0 UNP A0A075B6E EXPRESSION TAG SEQADV 7LXE GLY A 112 UNP A0A075B6E LINKER SEQADV 7LXE GLY A 113 UNP A0A075B6E LINKER SEQADV 7LXE SER A 114 UNP A0A075B6E LINKER SEQADV 7LXE GLY A 115 UNP A0A075B6E LINKER SEQADV 7LXE SER A 116 UNP A0A075B6E LINKER SEQADV 7LXE GLY A 117 UNP A0A075B6E LINKER SEQADV 7LXE PHE A 121 UNP B6VEX4 SER 295 CONFLICT SEQRES 1 A 156 SER ASN ALA MET SER GLU GLN SER ILE CYS GLN ALA ARG SEQRES 2 A 156 ALA ALA VAL MET VAL TYR ASP ASP ALA ASN LYS LYS TRP SEQRES 3 A 156 VAL PRO ALA GLY GLY SER THR GLY PHE SER ARG VAL HIS SEQRES 4 A 156 ILE TYR HIS HIS THR GLY ASN ASN THR PHE ARG VAL VAL SEQRES 5 A 156 GLY ARG LYS ILE GLN ASP HIS GLN VAL VAL ILE ASN CYS SEQRES 6 A 156 ALA ILE PRO LYS GLY LEU LYS TYR ASN GLN ALA THR GLN SEQRES 7 A 156 THR PHE HIS GLN TRP ARG ASP ALA ARG GLN VAL TYR GLY SEQRES 8 A 156 LEU ASN PHE GLY SER LYS GLU ASP ALA ASN VAL PHE ALA SEQRES 9 A 156 SER ALA MET MET HIS ALA LEU GLU VAL LEU GLY GLY SER SEQRES 10 A 156 GLY SER GLY PHE ASP ASP PHE PRO PRO PRO PRO PRO PRO SEQRES 11 A 156 PRO PRO VAL ASP TYR GLU ASP GLU GLU ALA ALA VAL VAL SEQRES 12 A 156 GLN TYR ASN ASP PRO TYR ALA ASP GLY ASP PRO ALA TRP HELIX 1 AA1 GLY A 27 SER A 29 5 3 HELIX 2 AA2 SER A 93 GLY A 113 1 21 SHEET 1 AA1 5 LYS A 22 PRO A 25 0 SHEET 2 AA1 5 GLU A 3 ASP A 17 -1 N VAL A 15 O VAL A 24 SHEET 3 AA1 5 SER A 33 HIS A 40 -1 O VAL A 35 N ALA A 9 SHEET 4 AA1 5 THR A 45 LYS A 52 -1 O VAL A 49 N HIS A 36 SHEET 5 AA1 5 VAL A 58 ALA A 63 -1 O CYS A 62 N VAL A 48 SHEET 1 AA2 5 LYS A 22 PRO A 25 0 SHEET 2 AA2 5 GLU A 3 ASP A 17 -1 N VAL A 15 O VAL A 24 SHEET 3 AA2 5 TYR A 87 PHE A 91 -1 O GLY A 88 N MET A 14 SHEET 4 AA2 5 PHE A 77 TRP A 80 -1 N TRP A 80 O TYR A 87 SHEET 5 AA2 5 ASN A 71 THR A 74 -1 N ASN A 71 O GLN A 79 CRYST1 56.067 77.485 66.167 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017836 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015113 0.00000