data_7LYJ # _entry.id 7LYJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7LYJ pdb_00007lyj 10.2210/pdb7lyj/pdb WWPDB D_1000255258 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-05-26 2 'Structure model' 1 1 2021-12-08 3 'Structure model' 1 2 2022-02-02 4 'Structure model' 1 3 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' database_2 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_database_2.pdbx_DOI' 11 2 'Structure model' '_database_2.pdbx_database_accession' 12 3 'Structure model' '_citation.journal_volume' 13 3 'Structure model' '_citation.page_first' 14 3 'Structure model' '_citation.page_last' 15 3 'Structure model' '_citation.title' 16 3 'Structure model' '_citation.year' 17 3 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7LYJ _pdbx_database_status.recvd_initial_deposition_date 2021-03-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jones, C.P.' 1 0000-0001-7780-5278 ;Ferre-D'Amare, A.R. ; 2 0000-0003-4549-1619 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Rna _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 28 _citation.language ? _citation.page_first 239 _citation.page_last 249 _citation.title 'Crystal structure of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) frameshifting pseudoknot.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.078825.121 _citation.pdbx_database_id_PubMed 34845084 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jones, C.P.' 1 ? primary ;Ferre-D'Amare, A.R. ; 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (66-MER)' 21286.672 1 ? ? ? ? 2 non-polymer syn 'IRIDIUM HEXAMMINE ION' 294.400 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 12 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 5 water nat water 18.015 39 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGCGGAAACGCUGAUGUCGUAUACAGGGCU _entity_poly.pdbx_seq_one_letter_code_can CGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGCGGAAACGCUGAUGUCGUAUACAGGGCU _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IRIDIUM HEXAMMINE ION' IRI 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 G n 1 4 U n 1 5 G n 1 6 U n 1 7 A n 1 8 A n 1 9 G n 1 10 U n 1 11 G n 1 12 C n 1 13 A n 1 14 G n 1 15 C n 1 16 C n 1 17 C n 1 18 G n 1 19 U n 1 20 C n 1 21 U n 1 22 U n 1 23 A n 1 24 C n 1 25 A n 1 26 C n 1 27 C n 1 28 G n 1 29 U n 1 30 G n 1 31 C n 1 32 G n 1 33 G n 1 34 C n 1 35 A n 1 36 C n 1 37 A n 1 38 G n 1 39 C n 1 40 G n 1 41 G n 1 42 A n 1 43 A n 1 44 A n 1 45 C n 1 46 G n 1 47 C n 1 48 U n 1 49 G n 1 50 A n 1 51 U n 1 52 G n 1 53 U n 1 54 C n 1 55 G n 1 56 U n 1 57 A n 1 58 U n 1 59 A n 1 60 C n 1 61 A n 1 62 G n 1 63 G n 1 64 G n 1 65 C n 1 66 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 66 _pdbx_entity_src_syn.organism_scientific 'Severe acute respiratory syndrome coronavirus 2' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 2697049 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 IRI non-polymer . 'IRIDIUM HEXAMMINE ION' ? 'H18 Ir N6 3' 294.400 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 U 10 10 10 U U A . n A 1 11 G 11 11 11 G G A . n A 1 12 C 12 12 12 C C A . n A 1 13 A 13 13 13 A A A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n A 1 18 G 18 18 18 G G A . n A 1 19 U 19 19 19 U U A . n A 1 20 C 20 20 20 C C A . n A 1 21 U 21 21 21 U U A . n A 1 22 U 22 22 22 U U A . n A 1 23 A 23 23 23 A A A . n A 1 24 C 24 24 24 C C A . n A 1 25 A 25 25 25 A A A . n A 1 26 C 26 26 26 C C A . n A 1 27 C 27 27 27 C C A . n A 1 28 G 28 28 28 G G A . n A 1 29 U 29 29 29 U U A . n A 1 30 G 30 30 30 G G A . n A 1 31 C 31 31 31 C C A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 C 34 34 34 C C A . n A 1 35 A 35 35 35 A A A . n A 1 36 C 36 36 36 C C A . n A 1 37 A 37 37 37 A A A . n A 1 38 G 38 38 38 G G A . n A 1 39 C 39 39 39 C C A . n A 1 40 G 40 40 40 G G A . n A 1 41 G 41 41 41 G G A . n A 1 42 A 42 42 42 A A A . n A 1 43 A 43 43 43 A A A . n A 1 44 A 44 44 44 A A A . n A 1 45 C 45 45 45 C C A . n A 1 46 G 46 46 46 G G A . n A 1 47 C 47 47 47 C C A . n A 1 48 U 48 48 48 U U A . n A 1 49 G 49 49 49 G G A . n A 1 50 A 50 50 50 A A A . n A 1 51 U 51 51 51 U U A . n A 1 52 G 52 52 52 G G A . n A 1 53 U 53 53 53 U U A . n A 1 54 C 54 54 54 C C A . n A 1 55 G 55 55 55 G G A . n A 1 56 U 56 56 56 U U A . n A 1 57 A 57 57 57 A A A . n A 1 58 U 58 58 58 U U A . n A 1 59 A 59 59 59 A A A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 G 62 62 62 G G A . n A 1 63 G 63 63 63 G G A . n A 1 64 G 64 64 64 G G A . n A 1 65 C 65 65 65 C C A . n A 1 66 U 66 66 66 U U A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IRI 1 101 1 IRI IRI A . C 2 IRI 1 102 2 IRI IRI A . D 3 MG 1 103 1 MG MG A . E 3 MG 1 104 6 MG MG A . F 3 MG 1 105 7 MG MG A . G 3 MG 1 106 8 MG MG A . H 3 MG 1 107 13 MG MG A . I 3 MG 1 108 14 MG MG A . J 3 MG 1 109 15 MG MG A . K 3 MG 1 110 16 MG MG A . L 3 MG 1 111 17 MG MG A . M 3 MG 1 112 19 MG MG A . N 3 MG 1 113 20 MG MG A . O 3 MG 1 114 21 MG MG A . P 4 K 1 115 1 K K A . Q 4 K 1 116 2 K K A . R 5 HOH 1 201 108 HOH HOH A . R 5 HOH 2 202 16 HOH HOH A . R 5 HOH 3 203 55 HOH HOH A . R 5 HOH 4 204 48 HOH HOH A . R 5 HOH 5 205 105 HOH HOH A . R 5 HOH 6 206 37 HOH HOH A . R 5 HOH 7 207 69 HOH HOH A . R 5 HOH 8 208 72 HOH HOH A . R 5 HOH 9 209 24 HOH HOH A . R 5 HOH 10 210 6 HOH HOH A . R 5 HOH 11 211 65 HOH HOH A . R 5 HOH 12 212 110 HOH HOH A . R 5 HOH 13 213 83 HOH HOH A . R 5 HOH 14 214 29 HOH HOH A . R 5 HOH 15 215 25 HOH HOH A . R 5 HOH 16 216 102 HOH HOH A . R 5 HOH 17 217 78 HOH HOH A . R 5 HOH 18 218 98 HOH HOH A . R 5 HOH 19 219 64 HOH HOH A . R 5 HOH 20 220 9 HOH HOH A . R 5 HOH 21 221 100 HOH HOH A . R 5 HOH 22 222 67 HOH HOH A . R 5 HOH 23 223 94 HOH HOH A . R 5 HOH 24 224 119 HOH HOH A . R 5 HOH 25 225 126 HOH HOH A . R 5 HOH 26 226 112 HOH HOH A . R 5 HOH 27 227 111 HOH HOH A . R 5 HOH 28 228 66 HOH HOH A . R 5 HOH 29 229 12 HOH HOH A . R 5 HOH 30 230 34 HOH HOH A . R 5 HOH 31 231 7 HOH HOH A . R 5 HOH 32 232 99 HOH HOH A . R 5 HOH 33 233 93 HOH HOH A . R 5 HOH 34 234 49 HOH HOH A . R 5 HOH 35 235 74 HOH HOH A . R 5 HOH 36 236 113 HOH HOH A . R 5 HOH 37 237 81 HOH HOH A . R 5 HOH 38 238 76 HOH HOH A . R 5 HOH 39 239 53 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.32 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 98.530 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7LYJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 115.465 _cell.length_a_esd ? _cell.length_b 39.477 _cell.length_b_esd ? _cell.length_c 39.398 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7LYJ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '36-40% MPD, 40 mM Na cacodylate, pH 5.5, 20 mM MgCl2, 2 mM cobalt hexammine' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-02-17 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 47.710 _reflns.entry_id 7LYJ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.950 _reflns.d_resolution_low 57.0940 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12611 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.700 _reflns.pdbx_Rmerge_I_obs 0.102 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.600 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.111 _reflns.pdbx_Rpim_I_all 0.044 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.950 2.000 ? ? 4916 ? ? ? 822 90.200 ? ? ? ? 1.436 ? ? ? ? ? ? ? ? 6.000 ? ? ? 1.200 1.573 0.628 ? 1 1 0.511 ? ? 8.950 57.090 ? ? 901 ? ? ? 153 99.200 ? ? ? ? 0.068 ? ? ? ? ? ? ? ? 5.900 ? ? ? 28.300 0.074 0.030 ? 2 1 0.995 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 157.580 _refine.B_iso_mean 54.3785 _refine.B_iso_min 28.400 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7LYJ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.1100 _refine.ls_d_res_low 57.0940 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9841 _refine.ls_number_reflns_R_free 979 _refine.ls_number_reflns_R_work 8862 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.5300 _refine.ls_percent_reflns_R_free 9.9500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2142 _refine.ls_R_factor_R_free 0.2506 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2102 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 34.0800 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2800 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.1100 _refine_hist.d_res_low 57.0940 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 1475 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 66 _refine_hist.pdbx_B_iso_mean_ligand 60.93 _refine_hist.pdbx_B_iso_mean_solvent 49.39 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1408 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.001 ? 1586 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.296 ? 2483 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.014 ? 329 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 66 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 10.255 ? 788 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.1101 2.2214 . . 132 1216 93.0000 . . . 0.3917 0.0000 0.3409 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2214 2.3606 . . 130 1214 92.0000 . . . 0.3314 0.0000 0.2958 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3606 2.5428 . . 140 1264 96.0000 . . . 0.3269 0.0000 0.2776 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5428 2.7987 . . 142 1290 97.0000 . . . 0.3181 0.0000 0.2878 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7987 3.2037 . . 140 1264 96.0000 . . . 0.3186 0.0000 0.2553 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2037 4.0361 . . 145 1270 95.0000 . . . 0.2176 0.0000 0.1794 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.0361 57.0940 . . 150 1344 98.0000 . . . 0.1997 0.0000 0.1610 . . . . . . . . . . . # _struct.entry_id 7LYJ _struct.title 'SARS-CoV-2 frameshifting pseudoknot RNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7LYJ _struct_keywords.text 'Pseudoknot, tetraloop, triple, SARS, virus, COVID, coronavirus, severe acute respiratory syndrome, frameshift, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 4 ? Q N N 4 ? R N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7LYJ _struct_ref.pdbx_db_accession 7LYJ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7LYJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 66 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7LYJ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 66 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 66 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'Primarily monomeric at 2 mg/ml, ~45% dimeric at 8 mg/ml' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 6 OP1 ? ? ? 1_555 J MG . MG ? ? A U 6 A MG 109 1_555 ? ? ? ? ? ? ? 2.738 ? ? metalc2 metalc ? ? A U 29 O4 ? ? ? 1_555 D MG . MG ? ? A U 29 A MG 103 1_555 ? ? ? ? ? ? ? 2.857 ? ? metalc3 metalc ? ? A G 30 O6 ? ? ? 1_555 D MG . MG ? ? A G 30 A MG 103 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc4 metalc ? ? A G 32 O6 ? ? ? 1_555 P K . K ? ? A G 32 A K 115 1_555 ? ? ? ? ? ? ? 3.078 ? ? metalc5 metalc ? ? A G 33 O6 ? ? ? 1_555 P K . K ? ? A G 33 A K 115 1_555 ? ? ? ? ? ? ? 2.757 ? ? metalc6 metalc ? ? A C 34 OP1 ? ? ? 1_555 J MG . MG ? ? A C 34 A MG 109 4_556 ? ? ? ? ? ? ? 2.932 ? ? metalc7 metalc ? ? A A 37 OP1 ? ? ? 1_555 K MG . MG ? ? A A 37 A MG 110 1_555 ? ? ? ? ? ? ? 2.035 ? ? metalc8 metalc ? ? A G 49 O6 ? ? ? 1_555 L MG . MG ? ? A G 49 A MG 111 1_555 ? ? ? ? ? ? ? 2.869 ? ? metalc9 metalc ? ? A U 53 O4 ? ? ? 1_555 P K . K ? ? A U 53 A K 115 1_555 ? ? ? ? ? ? ? 2.856 ? ? metalc10 metalc ? ? A G 55 O6 ? ? ? 1_555 D MG . MG ? ? A G 55 A MG 103 1_555 ? ? ? ? ? ? ? 2.745 ? ? metalc11 metalc ? ? A U 56 O4 ? ? ? 1_555 D MG . MG ? ? A U 56 A MG 103 1_555 ? ? ? ? ? ? ? 2.905 ? ? metalc12 metalc ? ? A U 66 OP1 ? ? ? 1_555 O MG . MG ? ? A U 66 A MG 114 1_555 ? ? ? ? ? ? ? 2.509 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 103 A HOH 221 1_555 ? ? ? ? ? ? ? 2.987 ? ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 104 A HOH 212 4_555 ? ? ? ? ? ? ? 2.566 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 104 A HOH 224 1_555 ? ? ? ? ? ? ? 2.857 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 104 A HOH 224 2_656 ? ? ? ? ? ? ? 2.857 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 105 A HOH 226 1_555 ? ? ? ? ? ? ? 2.619 ? ? metalc18 metalc ? ? G MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 106 A HOH 230 2_657 ? ? ? ? ? ? ? 2.126 ? ? metalc19 metalc ? ? H MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 107 A HOH 203 1_555 ? ? ? ? ? ? ? 2.156 ? ? metalc20 metalc ? ? H MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 107 A HOH 239 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc21 metalc ? ? K MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 110 A HOH 211 2_657 ? ? ? ? ? ? ? 2.069 ? ? metalc22 metalc ? ? K MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 110 A HOH 219 2_657 ? ? ? ? ? ? ? 2.321 ? ? metalc23 metalc ? ? K MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 110 A HOH 222 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc24 metalc ? ? K MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 110 A HOH 228 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc25 metalc ? ? L MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 111 A HOH 214 1_555 ? ? ? ? ? ? ? 2.797 ? ? metalc26 metalc ? ? L MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 111 A HOH 238 1_555 ? ? ? ? ? ? ? 2.357 ? ? metalc27 metalc ? ? M MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 112 A HOH 237 1_555 ? ? ? ? ? ? ? 2.256 ? ? metalc28 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 113 A HOH 223 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc29 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 113 A HOH 233 1_555 ? ? ? ? ? ? ? 2.214 ? ? metalc30 metalc ? ? O MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 114 A HOH 236 3_444 ? ? ? ? ? ? ? 2.122 ? ? metalc31 metalc ? ? P K . K ? ? ? 1_555 R HOH . O ? ? A K 115 A HOH 220 1_555 ? ? ? ? ? ? ? 2.953 ? ? metalc32 metalc ? ? P K . K ? ? ? 1_555 R HOH . O ? ? A K 115 A HOH 235 1_555 ? ? ? ? ? ? ? 2.974 ? ? metalc33 metalc ? ? Q K . K ? ? ? 1_555 R HOH . O ? ? A K 116 A HOH 217 1_555 ? ? ? ? ? ? ? 3.093 ? ? metalc34 metalc ? ? Q K . K ? ? ? 1_555 R HOH . O ? ? A K 116 A HOH 235 1_555 ? ? ? ? ? ? ? 3.454 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 1 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 1 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 1 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 2 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 2 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 2 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 26 N3 ? ? A G 3 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 26 O2 ? ? A G 3 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 26 N4 ? ? A G 3 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 25 N1 ? ? A U 4 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 25 N6 ? ? A U 4 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 24 N3 ? ? A G 5 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 24 O2 ? ? A G 5 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 24 N4 ? ? A G 5 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 6 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 6 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 22 N3 ? ? A A 7 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 22 O4 ? ? A A 7 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 21 N3 ? ? A A 8 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 21 O4 ? ? A A 8 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 9 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 9 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 9 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 9 A C 60 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog25 hydrog ? ? A U 10 O4 ? ? ? 1_555 A G 18 N1 ? ? A U 10 A G 18 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog26 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 11 A C 17 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog27 hydrog ? ? A G 11 N1 ? ? ? 1_555 A G 62 O6 ? ? A G 11 A G 62 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 62 N7 ? ? A G 11 A G 62 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 13 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 13 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 14 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 14 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 14 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 15 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 15 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 15 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 16 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 16 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 16 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 62 N1 ? ? A C 17 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 62 O6 ? ? A C 17 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 62 N2 ? ? A C 17 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 18 N2 ? ? ? 1_555 A A 61 N7 ? ? A G 18 A A 61 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog44 hydrog ? ? A G 18 N3 ? ? ? 1_555 A A 61 N6 ? ? A G 18 A A 61 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog45 hydrog ? ? A U 29 N3 ? ? ? 1_555 A A 57 N1 ? ? A U 29 A A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 29 O4 ? ? ? 1_555 A A 57 N6 ? ? A U 29 A A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 30 N1 ? ? ? 1_555 A U 56 O2 ? ? A G 30 A U 56 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? A G 30 O6 ? ? ? 1_555 A U 56 N3 ? ? A G 30 A U 56 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 55 N1 ? ? A C 31 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 55 O6 ? ? A C 31 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 55 N2 ? ? A C 31 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 54 N3 ? ? A G 32 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 54 O2 ? ? A G 32 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 54 N4 ? ? A G 32 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 33 N1 ? ? ? 1_555 A U 53 O2 ? ? A G 33 A U 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog56 hydrog ? ? A G 33 O6 ? ? ? 1_555 A U 53 N3 ? ? A G 33 A U 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog57 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 52 N1 ? ? A C 34 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 52 O6 ? ? A C 34 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 52 N2 ? ? A C 34 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 35 N1 ? ? ? 1_555 A U 51 N3 ? ? A A 35 A U 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 35 N6 ? ? ? 1_555 A U 51 O4 ? ? A A 35 A U 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 36 N3 ? ? ? 1_555 A G 49 N1 ? ? A C 36 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 36 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 36 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 36 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 36 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 37 N1 ? ? ? 1_555 A U 48 N3 ? ? A A 37 A U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 37 N6 ? ? ? 1_555 A U 48 O4 ? ? A A 37 A U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 38 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 38 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 38 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 38 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 38 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 38 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 39 N3 ? ? ? 1_555 A G 46 N1 ? ? A C 39 A G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 39 N4 ? ? ? 1_555 A G 46 O6 ? ? A C 39 A G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 39 O2 ? ? ? 1_555 A G 46 N2 ? ? A C 39 A G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 40 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 40 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 40 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 40 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 40 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 40 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 41 N2 ? ? ? 1_555 A A 44 N7 ? ? A G 41 A A 44 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A U 6 ? A U 6 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 OP1 ? A C 34 ? A C 34 ? 1_555 76.0 ? 2 O4 ? A U 29 ? A U 29 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O6 ? A G 30 ? A G 30 ? 1_555 77.8 ? 3 O4 ? A U 29 ? A U 29 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O6 ? A G 55 ? A G 55 ? 1_555 154.0 ? 4 O6 ? A G 30 ? A G 30 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O6 ? A G 55 ? A G 55 ? 1_555 78.2 ? 5 O4 ? A U 29 ? A U 29 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O4 ? A U 56 ? A U 56 ? 1_555 92.8 ? 6 O6 ? A G 30 ? A G 30 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O4 ? A U 56 ? A U 56 ? 1_555 83.0 ? 7 O6 ? A G 55 ? A G 55 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O4 ? A U 56 ? A U 56 ? 1_555 74.7 ? 8 O4 ? A U 29 ? A U 29 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? R HOH . ? A HOH 221 ? 1_555 73.8 ? 9 O6 ? A G 30 ? A G 30 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? R HOH . ? A HOH 221 ? 1_555 78.2 ? 10 O6 ? A G 55 ? A G 55 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? R HOH . ? A HOH 221 ? 1_555 110.4 ? 11 O4 ? A U 56 ? A U 56 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? R HOH . ? A HOH 221 ? 1_555 158.7 ? 12 O6 ? A G 32 ? A G 32 ? 1_555 K ? P K . ? A K 115 ? 1_555 O6 ? A G 33 ? A G 33 ? 1_555 75.8 ? 13 O6 ? A G 32 ? A G 32 ? 1_555 K ? P K . ? A K 115 ? 1_555 O4 ? A U 53 ? A U 53 ? 1_555 107.7 ? 14 O6 ? A G 33 ? A G 33 ? 1_555 K ? P K . ? A K 115 ? 1_555 O4 ? A U 53 ? A U 53 ? 1_555 82.6 ? 15 O6 ? A G 32 ? A G 32 ? 1_555 K ? P K . ? A K 115 ? 1_555 O ? R HOH . ? A HOH 220 ? 1_555 76.0 ? 16 O6 ? A G 33 ? A G 33 ? 1_555 K ? P K . ? A K 115 ? 1_555 O ? R HOH . ? A HOH 220 ? 1_555 80.8 ? 17 O4 ? A U 53 ? A U 53 ? 1_555 K ? P K . ? A K 115 ? 1_555 O ? R HOH . ? A HOH 220 ? 1_555 161.5 ? 18 O6 ? A G 32 ? A G 32 ? 1_555 K ? P K . ? A K 115 ? 1_555 O ? R HOH . ? A HOH 235 ? 1_555 124.5 ? 19 O6 ? A G 33 ? A G 33 ? 1_555 K ? P K . ? A K 115 ? 1_555 O ? R HOH . ? A HOH 235 ? 1_555 145.0 ? 20 O4 ? A U 53 ? A U 53 ? 1_555 K ? P K . ? A K 115 ? 1_555 O ? R HOH . ? A HOH 235 ? 1_555 64.8 ? 21 O ? R HOH . ? A HOH 220 ? 1_555 K ? P K . ? A K 115 ? 1_555 O ? R HOH . ? A HOH 235 ? 1_555 128.8 ? 22 OP1 ? A A 37 ? A A 37 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? R HOH . ? A HOH 211 ? 2_657 99.3 ? 23 OP1 ? A A 37 ? A A 37 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? R HOH . ? A HOH 219 ? 2_657 169.5 ? 24 O ? R HOH . ? A HOH 211 ? 2_657 MG ? K MG . ? A MG 110 ? 1_555 O ? R HOH . ? A HOH 219 ? 2_657 79.0 ? 25 OP1 ? A A 37 ? A A 37 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? R HOH . ? A HOH 222 ? 1_555 83.4 ? 26 O ? R HOH . ? A HOH 211 ? 2_657 MG ? K MG . ? A MG 110 ? 1_555 O ? R HOH . ? A HOH 222 ? 1_555 73.5 ? 27 O ? R HOH . ? A HOH 219 ? 2_657 MG ? K MG . ? A MG 110 ? 1_555 O ? R HOH . ? A HOH 222 ? 1_555 86.2 ? 28 OP1 ? A A 37 ? A A 37 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? R HOH . ? A HOH 228 ? 1_555 90.4 ? 29 O ? R HOH . ? A HOH 211 ? 2_657 MG ? K MG . ? A MG 110 ? 1_555 O ? R HOH . ? A HOH 228 ? 1_555 146.9 ? 30 O ? R HOH . ? A HOH 219 ? 2_657 MG ? K MG . ? A MG 110 ? 1_555 O ? R HOH . ? A HOH 228 ? 1_555 85.8 ? 31 O ? R HOH . ? A HOH 222 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? R HOH . ? A HOH 228 ? 1_555 76.3 ? 32 O6 ? A G 49 ? A G 49 ? 1_555 MG ? L MG . ? A MG 111 ? 1_555 O ? R HOH . ? A HOH 214 ? 1_555 80.3 ? 33 O6 ? A G 49 ? A G 49 ? 1_555 MG ? L MG . ? A MG 111 ? 1_555 O ? R HOH . ? A HOH 238 ? 1_555 122.4 ? 34 O ? R HOH . ? A HOH 214 ? 1_555 MG ? L MG . ? A MG 111 ? 1_555 O ? R HOH . ? A HOH 238 ? 1_555 57.2 ? 35 OP1 ? A U 66 ? A U 66 ? 1_555 MG ? O MG . ? A MG 114 ? 1_555 O ? R HOH . ? A HOH 236 ? 3_444 115.0 ? 36 O ? R HOH . ? A HOH 212 ? 4_555 MG ? E MG . ? A MG 104 ? 1_555 O ? R HOH . ? A HOH 224 ? 1_555 87.2 ? 37 O ? R HOH . ? A HOH 212 ? 4_555 MG ? E MG . ? A MG 104 ? 1_555 O ? R HOH . ? A HOH 224 ? 2_656 142.2 ? 38 O ? R HOH . ? A HOH 224 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? R HOH . ? A HOH 224 ? 2_656 119.2 ? 39 O ? R HOH . ? A HOH 203 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? R HOH . ? A HOH 239 ? 1_555 141.9 ? 40 O ? R HOH . ? A HOH 223 ? 1_555 MG ? N MG . ? A MG 113 ? 1_555 O ? R HOH . ? A HOH 233 ? 1_555 66.4 ? 41 O ? R HOH . ? A HOH 217 ? 1_555 K ? Q K . ? A K 116 ? 1_555 O ? R HOH . ? A HOH 235 ? 1_555 46.6 ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id MG _pdbx_struct_special_symmetry.auth_seq_id 104 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id MG _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 17.4166 0.5807 7.4593 0.4255 ? -0.0838 ? -0.1022 ? 0.2163 ? -0.0557 ? 0.3378 ? 8.8212 ? -1.9793 ? -1.5877 ? 8.3807 ? -2.8741 ? 7.2585 ? -0.0855 ? -0.2854 ? 0.4357 ? -0.6513 ? 0.1690 ? -0.0554 ? -0.7917 ? 0.1025 ? -0.0359 ? 2 'X-RAY DIFFRACTION' ? refined 9.5329 3.4342 -8.5894 0.8351 ? -0.0970 ? -0.3379 ? 0.5617 ? 0.0993 ? 0.6097 ? 5.6375 ? 1.2720 ? -0.2161 ? 1.4007 ? 0.2499 ? 2.6177 ? -0.5204 ? 0.8744 ? 1.0098 ? -0.1074 ? -0.2625 ? -0.0082 ? -1.0477 ? 0.5300 ? 0.8412 ? 3 'X-RAY DIFFRACTION' ? refined 34.4227 2.8859 19.0665 0.3655 ? -0.0089 ? -0.0415 ? 0.4209 ? -0.0415 ? 0.3761 ? 8.8458 ? 0.5499 ? 6.7372 ? 0.8855 ? 0.0495 ? 5.2706 ? -0.1669 ? 0.3252 ? -0.4831 ? 0.0192 ? 0.3130 ? -0.0567 ? -0.1926 ? 0.2872 ? -0.1524 ? 4 'X-RAY DIFFRACTION' ? refined 45.3522 4.4006 25.8466 0.3759 ? -0.0204 ? -0.0994 ? 0.3277 ? -0.0729 ? 0.4453 ? 2.4912 ? -0.2747 ? 0.8820 ? 1.3549 ? -0.3370 ? 2.1048 ? -0.0852 ? 0.5074 ? -0.5482 ? -0.0873 ? 0.2245 ? 0.1402 ? -0.1920 ? 0.2213 ? -0.1690 ? 5 'X-RAY DIFFRACTION' ? refined 15.3228 0.6904 -8.6345 0.6536 ? -0.3122 ? -0.1818 ? 0.7634 ? 0.2072 ? 0.4115 ? 9.1534 ? 3.2938 ? 3.6502 ? 7.8028 ? 5.0838 ? 7.5199 ? -0.5124 ? 1.0901 ? 0.8487 ? -0.1978 ? 0.3900 ? -0.0442 ? -0.9998 ? 1.0171 ? 0.0069 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 1 ? ? ? A 9 ? ? ;chain 'A' and (resid 1 through 9 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 10 ? ? ? A 19 ? ? ;chain 'A' and (resid 10 through 19 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? A 20 ? ? ? A 40 ? ? ;chain 'A' and (resid 20 through 40 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? A 41 ? ? ? A 57 ? ? ;chain 'A' and (resid 41 through 57 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? A 58 ? ? ? A 66 ? ? ;chain 'A' and (resid 58 through 66 ) ; # _pdbx_entry_details.entry_id 7LYJ _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;The first residue of the RNA (PDB chain A 1 C) corresponds to the SARS-CoV-2 sequence C13476 (Genome Reference Sequence NC_045512). As residues 39-46 are not biological and were added for crystallization, the biological sequence resumes with residue 47 (PDB chain A 47 C), which corresponds to SARS-CoV-2 sequence C13523. ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 IRI IR IR N N 114 IRI N1 N N N 115 IRI N2 N N N 116 IRI N3 N N N 117 IRI N4 N N N 118 IRI N5 N N N 119 IRI N6 N N N 120 IRI HN11 H N N 121 IRI HN12 H N N 122 IRI HN13 H N N 123 IRI HN21 H N N 124 IRI HN22 H N N 125 IRI HN23 H N N 126 IRI HN31 H N N 127 IRI HN32 H N N 128 IRI HN33 H N N 129 IRI HN41 H N N 130 IRI HN42 H N N 131 IRI HN43 H N N 132 IRI HN51 H N N 133 IRI HN52 H N N 134 IRI HN53 H N N 135 IRI HN61 H N N 136 IRI HN62 H N N 137 IRI HN63 H N N 138 K K K N N 139 MG MG MG N N 140 U OP3 O N N 141 U P P N N 142 U OP1 O N N 143 U OP2 O N N 144 U "O5'" O N N 145 U "C5'" C N N 146 U "C4'" C N R 147 U "O4'" O N N 148 U "C3'" C N S 149 U "O3'" O N N 150 U "C2'" C N R 151 U "O2'" O N N 152 U "C1'" C N R 153 U N1 N N N 154 U C2 C N N 155 U O2 O N N 156 U N3 N N N 157 U C4 C N N 158 U O4 O N N 159 U C5 C N N 160 U C6 C N N 161 U HOP3 H N N 162 U HOP2 H N N 163 U "H5'" H N N 164 U "H5''" H N N 165 U "H4'" H N N 166 U "H3'" H N N 167 U "HO3'" H N N 168 U "H2'" H N N 169 U "HO2'" H N N 170 U "H1'" H N N 171 U H3 H N N 172 U H5 H N N 173 U H6 H N N 174 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 IRI IR N1 sing N N 118 IRI IR N2 sing N N 119 IRI IR N3 sing N N 120 IRI IR N4 sing N N 121 IRI IR N5 sing N N 122 IRI IR N6 sing N N 123 IRI N1 HN11 sing N N 124 IRI N1 HN12 sing N N 125 IRI N1 HN13 sing N N 126 IRI N2 HN21 sing N N 127 IRI N2 HN22 sing N N 128 IRI N2 HN23 sing N N 129 IRI N3 HN31 sing N N 130 IRI N3 HN32 sing N N 131 IRI N3 HN33 sing N N 132 IRI N4 HN41 sing N N 133 IRI N4 HN42 sing N N 134 IRI N4 HN43 sing N N 135 IRI N5 HN51 sing N N 136 IRI N5 HN52 sing N N 137 IRI N5 HN53 sing N N 138 IRI N6 HN61 sing N N 139 IRI N6 HN62 sing N N 140 IRI N6 HN63 sing N N 141 U OP3 P sing N N 142 U OP3 HOP3 sing N N 143 U P OP1 doub N N 144 U P OP2 sing N N 145 U P "O5'" sing N N 146 U OP2 HOP2 sing N N 147 U "O5'" "C5'" sing N N 148 U "C5'" "C4'" sing N N 149 U "C5'" "H5'" sing N N 150 U "C5'" "H5''" sing N N 151 U "C4'" "O4'" sing N N 152 U "C4'" "C3'" sing N N 153 U "C4'" "H4'" sing N N 154 U "O4'" "C1'" sing N N 155 U "C3'" "O3'" sing N N 156 U "C3'" "C2'" sing N N 157 U "C3'" "H3'" sing N N 158 U "O3'" "HO3'" sing N N 159 U "C2'" "O2'" sing N N 160 U "C2'" "C1'" sing N N 161 U "C2'" "H2'" sing N N 162 U "O2'" "HO2'" sing N N 163 U "C1'" N1 sing N N 164 U "C1'" "H1'" sing N N 165 U N1 C2 sing N N 166 U N1 C6 sing N N 167 U C2 O2 doub N N 168 U C2 N3 sing N N 169 U N3 C4 sing N N 170 U N3 H3 sing N N 171 U C4 O4 doub N N 172 U C4 C5 sing N N 173 U C5 C6 doub N N 174 U C5 H5 sing N N 175 U C6 H6 sing N N 176 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7LYJ 'double helix' 7LYJ 'a-form double helix' 7LYJ tetraloop 7LYJ 'bulge loop' 7LYJ 'mismatched base pair' 7LYJ 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 13 1_555 A U 66 1_555 -1.981 -0.107 -0.105 -7.410 -4.261 -8.341 1 A_A13:U66_A A 13 ? A 66 ? 20 1 1 A G 14 1_555 A C 65 1_555 -0.310 0.067 0.029 -0.191 -7.596 3.403 2 A_G14:C65_A A 14 ? A 65 ? 19 1 1 A C 15 1_555 A G 64 1_555 0.066 0.200 -0.390 17.841 -11.447 5.179 3 A_C15:G64_A A 15 ? A 64 ? 19 1 1 A C 16 1_555 A G 63 1_555 0.265 -0.135 -0.492 9.600 -14.711 0.410 4 A_C16:G63_A A 16 ? A 63 ? 19 1 1 A C 17 1_555 A G 62 1_555 0.736 0.062 -0.030 2.773 -8.808 4.827 5 A_C17:G62_A A 17 ? A 62 ? 19 1 1 A G 18 1_555 A U 10 1_555 5.151 0.706 -0.041 13.075 -5.341 -70.592 6 A_G18:U10_A A 18 ? A 10 ? ? 2 1 A C 20 1_555 A G 9 1_555 0.002 0.095 -0.311 20.345 -21.626 2.354 7 A_C20:G9_A A 20 ? A 9 ? 19 1 1 A U 21 1_555 A A 8 1_555 0.074 -0.092 0.170 3.962 -12.541 4.601 8 A_U21:A8_A A 21 ? A 8 ? 20 1 1 A U 22 1_555 A A 7 1_555 -0.043 -0.136 -0.067 7.661 -12.525 2.514 9 A_U22:A7_A A 22 ? A 7 ? 20 1 1 A A 23 1_555 A U 6 1_555 -0.347 -0.062 0.216 3.151 -13.216 4.832 10 A_A23:U6_A A 23 ? A 6 ? 20 1 1 A C 24 1_555 A G 5 1_555 0.121 -0.106 -0.195 10.106 -11.528 0.834 11 A_C24:G5_A A 24 ? A 5 ? 19 1 1 A A 25 1_555 A U 4 1_555 -0.288 -0.124 0.073 6.714 -11.134 1.474 12 A_A25:U4_A A 25 ? A 4 ? 20 1 1 A C 26 1_555 A G 3 1_555 0.616 -0.214 0.078 5.841 -10.723 4.205 13 A_C26:G3_A A 26 ? A 3 ? 19 1 1 A C 27 1_555 A G 2 1_555 0.212 -0.036 0.214 2.698 -10.609 5.376 14 A_C27:G2_A A 27 ? A 2 ? 19 1 1 A G 28 1_555 A C 1 1_555 -0.004 -0.031 0.346 -7.018 -17.792 5.964 15 A_G28:C1_A A 28 ? A 1 ? 19 1 1 A U 29 1_555 A A 57 1_555 0.490 -0.115 0.122 -9.017 -11.195 -5.488 16 A_U29:A57_A A 29 ? A 57 ? 20 1 1 A G 30 1_555 A U 56 1_555 -1.937 -0.453 0.455 6.275 -15.001 2.339 17 A_G30:U56_A A 30 ? A 56 ? 28 1 1 A C 31 1_555 A G 55 1_555 0.265 -0.044 -0.030 10.750 -16.059 2.093 18 A_C31:G55_A A 31 ? A 55 ? 19 1 1 A G 32 1_555 A C 54 1_555 -0.239 -0.269 -0.130 -0.279 -8.427 2.822 19 A_G32:C54_A A 32 ? A 54 ? 19 1 1 A G 33 1_555 A U 53 1_555 -2.296 -0.453 -0.202 -7.178 -13.121 -1.267 20 A_G33:U53_A A 33 ? A 53 ? 28 1 1 A C 34 1_555 A G 52 1_555 0.715 -0.119 0.113 3.468 -11.312 3.012 21 A_C34:G52_A A 34 ? A 52 ? 19 1 1 A A 35 1_555 A U 51 1_555 -0.117 -0.076 0.034 0.450 -5.436 4.047 22 A_A35:U51_A A 35 ? A 51 ? 20 1 1 A C 36 1_555 A G 49 1_555 0.050 0.006 0.110 4.103 -12.178 -3.529 23 A_C36:G49_A A 36 ? A 49 ? 19 1 1 A A 37 1_555 A U 48 1_555 -0.396 -0.098 0.185 4.949 -16.515 -1.008 24 A_A37:U48_A A 37 ? A 48 ? 20 1 1 A G 38 1_555 A C 47 1_555 -0.186 -0.153 0.065 -0.897 -15.116 0.085 25 A_G38:C47_A A 38 ? A 47 ? 19 1 1 A C 39 1_555 A G 46 1_555 0.516 -0.316 0.013 4.005 -12.286 -3.538 26 A_C39:G46_A A 39 ? A 46 ? 19 1 1 A G 40 1_555 A C 45 1_555 0.245 -0.103 -0.281 -4.155 -0.158 -1.915 27 A_G40:C45_A A 40 ? A 45 ? 19 1 1 A G 41 1_555 A A 44 1_555 7.557 -5.305 1.463 9.049 -13.916 -33.106 28 A_G41:A44_A A 41 ? A 44 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 13 1_555 A U 66 1_555 A G 14 1_555 A C 65 1_555 0.668 -1.372 3.146 -2.941 8.870 38.259 -2.995 -1.310 2.717 13.292 4.407 39.342 1 AA_A13G14:C65U66_AA A 13 ? A 66 ? A 14 ? A 65 ? 1 A G 14 1_555 A C 65 1_555 A C 15 1_555 A G 64 1_555 0.172 -1.335 2.972 1.570 -0.054 30.976 -2.487 -0.046 2.980 -0.102 -2.938 31.015 2 AA_G14C15:G64C65_AA A 14 ? A 65 ? A 15 ? A 64 ? 1 A C 15 1_555 A G 64 1_555 A C 16 1_555 A G 63 1_555 -0.270 -1.989 3.596 0.138 5.000 32.888 -4.356 0.496 3.265 8.768 -0.241 33.256 3 AA_C15C16:G63G64_AA A 15 ? A 64 ? A 16 ? A 63 ? 1 A C 16 1_555 A G 63 1_555 A C 17 1_555 A G 62 1_555 -0.225 -1.956 3.492 -3.272 7.444 29.686 -5.147 -0.217 2.934 14.196 6.241 30.755 4 AA_C16C17:G62G63_AA A 16 ? A 63 ? A 17 ? A 62 ? 1 A C 17 1_555 A G 62 1_555 A G 18 1_555 A U 10 1_555 1.655 -4.138 3.235 -3.369 -1.417 93.168 -2.821 -1.200 3.236 -0.975 2.318 93.223 5 AA_C17G18:U10G62_AA A 17 ? A 62 ? A 18 ? A 10 ? 1 A G 18 1_555 A U 10 1_555 A C 20 1_555 A G 9 1_555 2.892 -0.138 2.945 8.498 -4.335 37.635 0.322 -3.317 3.487 -6.591 -12.921 38.783 6 AA_G18C20:G9U10_AA A 18 ? A 10 ? A 20 ? A 9 ? 1 A C 20 1_555 A G 9 1_555 A U 21 1_555 A A 8 1_555 -0.149 -1.728 3.786 -5.114 7.699 33.371 -4.218 -0.620 3.304 13.098 8.700 34.592 7 AA_C20U21:A8G9_AA A 20 ? A 9 ? A 21 ? A 8 ? 1 A U 21 1_555 A A 8 1_555 A U 22 1_555 A A 7 1_555 -0.149 -1.237 3.089 2.214 5.721 31.761 -3.143 0.624 2.813 10.332 -3.998 32.333 8 AA_U21U22:A7A8_AA A 21 ? A 8 ? A 22 ? A 7 ? 1 A U 22 1_555 A A 7 1_555 A A 23 1_555 A U 6 1_555 -0.353 -1.318 3.164 -2.831 14.353 31.770 -4.138 0.205 2.388 24.651 4.862 34.897 9 AA_U22A23:U6A7_AA A 22 ? A 7 ? A 23 ? A 6 ? 1 A A 23 1_555 A U 6 1_555 A C 24 1_555 A G 5 1_555 -0.283 -1.072 3.167 1.768 7.316 31.823 -3.085 0.787 2.837 13.114 -3.169 32.678 10 AA_A23C24:G5U6_AA A 23 ? A 6 ? A 24 ? A 5 ? 1 A C 24 1_555 A G 5 1_555 A A 25 1_555 A U 4 1_555 -0.163 -1.389 3.236 -2.742 14.318 30.217 -4.542 -0.125 2.362 25.673 4.917 33.476 11 AA_C24A25:U4G5_AA A 24 ? A 5 ? A 25 ? A 4 ? 1 A A 25 1_555 A U 4 1_555 A C 26 1_555 A G 3 1_555 0.098 -1.441 3.252 -0.591 8.874 36.180 -3.370 -0.228 2.831 14.029 0.935 37.222 12 AA_A25C26:G3U4_AA A 25 ? A 4 ? A 26 ? A 3 ? 1 A C 26 1_555 A G 3 1_555 A C 27 1_555 A G 2 1_555 0.205 -1.593 3.150 0.744 9.876 31.130 -4.365 -0.250 2.543 17.845 -1.345 32.630 13 AA_C26C27:G2G3_AA A 26 ? A 3 ? A 27 ? A 2 ? 1 A C 27 1_555 A G 2 1_555 A G 28 1_555 A C 1 1_555 0.403 -1.782 3.200 2.000 12.720 30.787 -4.973 -0.409 2.323 22.751 -3.578 33.311 14 AA_C27G28:C1G2_AA A 27 ? A 2 ? A 28 ? A 1 ? 1 A G 28 1_555 A C 1 1_555 A U 29 1_555 A A 57 1_555 -0.626 -1.548 3.267 2.212 0.061 37.908 -2.386 1.242 3.224 0.093 -3.401 37.970 15 AA_G28U29:A57C1_AA A 28 ? A 1 ? A 29 ? A 57 ? 1 A U 29 1_555 A A 57 1_555 A G 30 1_555 A U 56 1_555 0.485 -1.141 2.625 -7.211 15.625 24.819 -4.400 -1.951 1.474 31.916 14.729 30.124 16 AA_U29G30:U56A57_AA A 29 ? A 57 ? A 30 ? A 56 ? 1 A G 30 1_555 A U 56 1_555 A C 31 1_555 A G 55 1_555 -0.084 -1.171 3.140 1.688 5.124 39.973 -2.240 0.301 2.968 7.454 -2.455 40.321 17 AA_G30C31:G55U56_AA A 30 ? A 56 ? A 31 ? A 55 ? 1 A C 31 1_555 A G 55 1_555 A G 32 1_555 A C 54 1_555 -0.307 -1.591 3.339 -3.249 15.756 28.861 -5.244 0.037 2.219 28.947 5.970 32.959 18 AA_C31G32:C54G55_AA A 31 ? A 55 ? A 32 ? A 54 ? 1 A G 32 1_555 A C 54 1_555 A G 33 1_555 A U 53 1_555 0.205 -2.181 3.102 -1.776 14.028 27.341 -6.298 -0.663 1.779 27.471 3.477 30.719 19 AA_G32G33:U53C54_AA A 32 ? A 54 ? A 33 ? A 53 ? 1 A G 33 1_555 A U 53 1_555 A C 34 1_555 A G 52 1_555 0.068 -1.200 3.071 -2.737 6.286 41.213 -2.286 -0.357 2.856 8.856 3.856 41.755 20 AA_G33C34:G52U53_AA A 33 ? A 53 ? A 34 ? A 52 ? 1 A C 34 1_555 A G 52 1_555 A A 35 1_555 A U 51 1_555 0.394 -1.810 3.392 -0.532 4.090 27.406 -4.763 -0.951 3.086 8.571 1.114 27.709 21 AA_C34A35:U51G52_AA A 34 ? A 52 ? A 35 ? A 51 ? 1 A A 35 1_555 A U 51 1_555 A C 36 1_555 A G 49 1_555 1.829 -0.890 3.023 3.707 7.250 51.147 -1.473 -1.863 2.997 8.337 -4.263 51.748 22 AA_A35C36:G49U51_AA A 35 ? A 51 ? A 36 ? A 49 ? 1 A C 36 1_555 A G 49 1_555 A A 37 1_555 A U 48 1_555 -0.221 -1.346 3.020 -3.712 15.055 30.905 -4.231 -0.111 2.164 26.278 6.479 34.492 23 AA_C36A37:U48G49_AA A 36 ? A 49 ? A 37 ? A 48 ? 1 A A 37 1_555 A U 48 1_555 A G 38 1_555 A C 47 1_555 -0.229 -1.227 3.381 -0.806 9.933 34.836 -3.353 0.257 2.937 16.186 1.314 36.191 24 AA_A37G38:C47U48_AA A 37 ? A 48 ? A 38 ? A 47 ? 1 A G 38 1_555 A C 47 1_555 A C 39 1_555 A G 46 1_555 0.117 -1.289 3.141 1.140 4.543 35.966 -2.668 -0.038 2.964 7.319 -1.836 36.260 25 AA_G38C39:G46C47_AA A 38 ? A 47 ? A 39 ? A 46 ? 1 A C 39 1_555 A G 46 1_555 A G 40 1_555 A C 45 1_555 0.366 -1.881 3.444 2.673 10.925 30.373 -5.237 -0.203 2.649 20.011 -4.895 32.343 26 AA_C39G40:C45G46_AA A 39 ? A 46 ? A 40 ? A 45 ? 1 A G 40 1_555 A C 45 1_555 A G 41 1_555 A A 44 1_555 -3.478 -1.296 2.937 -2.247 17.915 54.620 -2.196 3.520 2.562 18.952 2.377 57.309 27 AA_G40G41:A44C45_AA A 40 ? A 45 ? A 41 ? A 44 ? # _atom_sites.entry_id 7LYJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.008661 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001299 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025331 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025666 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C IR K MG N O P # loop_