HEADER TRANSFERASE/TRANSFERASE INHIBITOR 11-MAR-21 7M0M TITLE HPK1 IN COMPLEX WITH COMPOUND 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: HEMATOPOIETIC PROGENITOR KINASE,MAPK/ERK KINASE KINASE COMPND 6 KINASE 1,MEK KINASE KINASE 1,MEKKK 1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP4K1, HPK1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS HPK1 HEMATOPOIETIC PROGENITOR KINASE, TRANSFERASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.LESBURG REVDAT 4 03-APR-24 7M0M 1 REMARK REVDAT 3 06-MAR-24 7M0M 1 REMARK REVDAT 2 05-MAY-21 7M0M 1 JRNL REVDAT 1 07-APR-21 7M0M 0 JRNL AUTH B.A.VARA,S.M.LEVI,A.ACHAB,D.A.CANDITO,X.FRADERA,C.A.LESBURG, JRNL AUTH 2 S.KAWAMURA,B.M.LACEY,J.LIM,J.L.METHOT,Z.XU,H.XU,D.M.SMITH, JRNL AUTH 3 J.A.PIESVAUX,J.R.MILLER,M.BITTINGER,S.H.RANGANATH, JRNL AUTH 4 D.J.BENNETT,E.F.DIMAURO,A.PASTERNAK JRNL TITL DISCOVERY OF DIAMINOPYRIMIDINE CARBOXAMIDE HPK1 INHIBITORS JRNL TITL 2 AS PRECLINICAL IMMUNOTHERAPY TOOL COMPOUNDS. JRNL REF ACS MED.CHEM.LETT. V. 12 653 2021 JRNL REFN ISSN 1948-5875 JRNL PMID 33859804 JRNL DOI 10.1021/ACSMEDCHEMLETT.1C00096 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 46005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2211 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3322 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4611 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.29000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.48000 REMARK 3 B13 (A**2) : -1.53000 REMARK 3 B23 (A**2) : 0.49000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.178 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4751 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4573 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6467 ; 1.587 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10489 ; 1.266 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 596 ; 6.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;34.615 ;23.812 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 805 ;12.714 ;15.037 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;21.620 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 719 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5370 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1059 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 292 B 3 292 6962 0.040 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 15.409 -39.816 24.079 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.1093 REMARK 3 T33: 0.2371 T12: 0.0373 REMARK 3 T13: -0.1177 T23: -0.1133 REMARK 3 L TENSOR REMARK 3 L11: 2.3076 L22: 4.1142 REMARK 3 L33: 4.7809 L12: -0.1064 REMARK 3 L13: -0.0668 L23: 1.7277 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: 0.2063 S13: -0.1660 REMARK 3 S21: -0.1558 S22: 0.0665 S23: 0.2282 REMARK 3 S31: 0.2754 S32: -0.1996 S33: -0.1192 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 10.777 -18.894 12.715 REMARK 3 T TENSOR REMARK 3 T11: 0.2265 T22: 0.2603 REMARK 3 T33: 0.2650 T12: -0.0047 REMARK 3 T13: 0.0046 T23: 0.0506 REMARK 3 L TENSOR REMARK 3 L11: 0.1927 L22: 2.3746 REMARK 3 L33: 8.4688 L12: -0.2429 REMARK 3 L13: 0.5151 L23: -4.4693 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.1458 S13: 0.1580 REMARK 3 S21: -0.0407 S22: 0.0683 S23: 0.0600 REMARK 3 S31: -0.0115 S32: -0.1200 S33: -0.0383 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 12.620 -3.997 5.750 REMARK 3 T TENSOR REMARK 3 T11: 0.0890 T22: 0.1713 REMARK 3 T33: 0.2470 T12: 0.0238 REMARK 3 T13: -0.0257 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 1.2073 L22: 0.8839 REMARK 3 L33: 11.9449 L12: 0.6814 REMARK 3 L13: 1.8968 L23: -1.0302 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.0400 S13: -0.0600 REMARK 3 S21: -0.0371 S22: -0.1022 S23: -0.1073 REMARK 3 S31: 0.1956 S32: 0.1720 S33: 0.1049 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): 14.971 -9.403 18.801 REMARK 3 T TENSOR REMARK 3 T11: 0.2300 T22: 0.2880 REMARK 3 T33: 0.2311 T12: 0.0227 REMARK 3 T13: -0.0358 T23: 0.0619 REMARK 3 L TENSOR REMARK 3 L11: 0.0715 L22: 0.9662 REMARK 3 L33: 5.0653 L12: -0.2448 REMARK 3 L13: 0.5797 L23: -2.1880 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: 0.0446 S13: 0.0017 REMARK 3 S21: 0.0276 S22: -0.0426 S23: 0.0274 REMARK 3 S31: -0.0214 S32: 0.2644 S33: 0.0123 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 160 REMARK 3 RESIDUE RANGE : A 195 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): 16.075 -18.756 41.163 REMARK 3 T TENSOR REMARK 3 T11: 0.0801 T22: 0.0563 REMARK 3 T33: 0.2010 T12: 0.0662 REMARK 3 T13: -0.0974 T23: -0.0722 REMARK 3 L TENSOR REMARK 3 L11: 2.7030 L22: 2.5855 REMARK 3 L33: 3.1165 L12: -0.1029 REMARK 3 L13: 0.0822 L23: 0.2792 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: 0.0442 S13: 0.2477 REMARK 3 S21: -0.0164 S22: 0.0033 S23: 0.0753 REMARK 3 S31: -0.2944 S32: -0.2584 S33: 0.0128 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): -12.520 -12.508 -2.557 REMARK 3 T TENSOR REMARK 3 T11: 0.0960 T22: 0.0669 REMARK 3 T33: 0.2159 T12: 0.0124 REMARK 3 T13: -0.0702 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 3.0073 L22: 4.5206 REMARK 3 L33: 2.5341 L12: 0.6500 REMARK 3 L13: 0.9679 L23: 0.4604 REMARK 3 S TENSOR REMARK 3 S11: 0.1174 S12: -0.1658 S13: -0.3347 REMARK 3 S21: 0.0584 S22: 0.0075 S23: 0.1133 REMARK 3 S31: 0.4398 S32: -0.1194 S33: -0.1248 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 161 B 174 REMARK 3 ORIGIN FOR THE GROUP (A): -0.515 -14.913 18.868 REMARK 3 T TENSOR REMARK 3 T11: 0.2643 T22: 0.2705 REMARK 3 T33: 0.1906 T12: 0.0132 REMARK 3 T13: -0.0131 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.4068 L22: 1.7945 REMARK 3 L33: 10.2489 L12: -1.5861 REMARK 3 L13: 3.7633 L23: -4.2679 REMARK 3 S TENSOR REMARK 3 S11: -0.0811 S12: 0.0040 S13: 0.0048 REMARK 3 S21: 0.1104 S22: -0.0306 S23: -0.0293 REMARK 3 S31: -0.1725 S32: 0.2059 S33: 0.1116 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 175 B 182 REMARK 3 ORIGIN FOR THE GROUP (A): 6.770 -14.509 34.080 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.2883 REMARK 3 T33: 0.2578 T12: 0.1310 REMARK 3 T13: -0.1137 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.2100 L22: 9.4413 REMARK 3 L33: 12.2846 L12: 4.5395 REMARK 3 L13: -3.2149 L23: -7.1399 REMARK 3 S TENSOR REMARK 3 S11: -0.2101 S12: 0.2962 S13: 0.1555 REMARK 3 S21: -0.3785 S22: 0.5923 S23: 0.2571 REMARK 3 S31: -0.1727 S32: -1.0564 S33: -0.3822 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 183 B 194 REMARK 3 ORIGIN FOR THE GROUP (A): 4.570 -5.571 22.268 REMARK 3 T TENSOR REMARK 3 T11: 0.3044 T22: 0.3784 REMARK 3 T33: 0.2836 T12: 0.0238 REMARK 3 T13: -0.0383 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.1232 L22: 1.7292 REMARK 3 L33: 7.4588 L12: -0.4557 REMARK 3 L13: 0.9520 L23: -3.5746 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.1007 S13: -0.0300 REMARK 3 S21: -0.0301 S22: 0.2626 S23: 0.1309 REMARK 3 S31: 0.1335 S32: -0.6676 S33: -0.2611 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 160 REMARK 3 RESIDUE RANGE : B 195 B 293 REMARK 3 ORIGIN FOR THE GROUP (A): 7.512 5.191 -0.210 REMARK 3 T TENSOR REMARK 3 T11: 0.0441 T22: 0.1328 REMARK 3 T33: 0.4459 T12: 0.0160 REMARK 3 T13: -0.1221 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 2.1789 L22: 3.2350 REMARK 3 L33: 3.5920 L12: 0.0806 REMARK 3 L13: 0.1791 L23: -1.4642 REMARK 3 S TENSOR REMARK 3 S11: -0.0918 S12: 0.0212 S13: 0.1842 REMARK 3 S21: 0.1091 S22: -0.4025 S23: -0.8323 REMARK 3 S31: -0.0182 S32: 0.6198 S33: 0.4944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7M0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48216 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 63.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 13.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44200 REMARK 200 FOR SHELL : 2.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PREVIOUSLY SOLVED STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS PH 8.0 , 150 MM NACL , 5% REMARK 280 GLYCEROL , 2 MM DTT, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 2 REMARK 465 PRO B 294 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 2 CG OD1 OD2 REMARK 480 LYS A 49 CE NZ REMARK 480 ARG A 70 NE CZ NH1 NH2 REMARK 480 GLN A 85 CD OE1 NE2 REMARK 480 LYS A 132 CE NZ REMARK 480 GLU A 171 CD OE1 OE2 REMARK 480 ILE A 173 CD1 REMARK 480 LYS A 189 CD CE NZ REMARK 480 LYS A 238 CE NZ REMARK 480 LYS A 240 CE NZ REMARK 480 LYS A 257 CD CE NZ REMARK 480 LYS A 260 CE NZ REMARK 480 LYS A 261 CE NZ REMARK 480 LYS A 267 NZ REMARK 480 ASN A 293 CG OD1 ND2 REMARK 480 ARG B 11 CZ NH1 NH2 REMARK 480 LYS B 49 CD CE NZ REMARK 480 ASP B 53 CG OD1 OD2 REMARK 480 LYS B 61 CE NZ REMARK 480 LYS B 132 NZ REMARK 480 ARG B 168 CD NE CZ NH1 NH2 REMARK 480 ARG B 169 CZ NH1 NH2 REMARK 480 LEU B 170 CD1 CD2 REMARK 480 GLU B 171 CD OE1 OE2 REMARK 480 ILE B 173 CD1 REMARK 480 LYS B 189 CE NZ REMARK 480 LEU B 221 CD1 CD2 REMARK 480 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 480 LEU B 226 CD1 CD2 REMARK 480 LYS B 229 CD CE NZ REMARK 480 ARG B 236 CZ NH1 NH2 REMARK 480 LYS B 238 CE NZ REMARK 480 LYS B 240 CE NZ REMARK 480 LYS B 252 NZ REMARK 480 LYS B 257 CE NZ REMARK 480 LYS B 260 CD CE NZ REMARK 480 LYS B 261 CD CE NZ REMARK 480 LYS B 267 CE NZ REMARK 480 LYS B 292 CG CD CE NZ REMARK 480 ASN B 293 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 236 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 236 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 38 -61.02 -98.14 REMARK 500 ASP A 53 52.41 -105.92 REMARK 500 ASP A 137 41.20 -149.68 REMARK 500 ASP A 155 80.08 49.93 REMARK 500 LEU A 211 -0.84 75.61 REMARK 500 LEU A 255 42.28 -96.01 REMARK 500 VAL B 38 -61.87 -93.31 REMARK 500 ASP B 53 50.47 -103.46 REMARK 500 ASP B 137 40.77 -151.45 REMARK 500 ASP B 155 82.75 57.96 REMARK 500 LEU B 211 -0.99 74.61 REMARK 500 SER B 230 -160.71 63.52 REMARK 500 LEU B 255 43.11 -95.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YK1 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YK1 B 301 DBREF 7M0M A 2 294 UNP Q92918 M4K1_HUMAN 2 294 DBREF 7M0M B 2 294 UNP Q92918 M4K1_HUMAN 2 294 SEQADV 7M0M GLU A 165 UNP Q92918 THR 165 CONFLICT SEQADV 7M0M GLU A 171 UNP Q92918 SER 171 CONFLICT SEQADV 7M0M GLU B 165 UNP Q92918 THR 165 CONFLICT SEQADV 7M0M GLU B 171 UNP Q92918 SER 171 CONFLICT SEQRES 1 A 293 ASP VAL VAL ASP PRO ASP ILE PHE ASN ARG ASP PRO ARG SEQRES 2 A 293 ASP HIS TYR ASP LEU LEU GLN ARG LEU GLY GLY GLY THR SEQRES 3 A 293 TYR GLY GLU VAL PHE LYS ALA ARG ASP LYS VAL SER GLY SEQRES 4 A 293 ASP LEU VAL ALA LEU LYS MET VAL LYS MET GLU PRO ASP SEQRES 5 A 293 ASP ASP VAL SER THR LEU GLN LYS GLU ILE LEU ILE LEU SEQRES 6 A 293 LYS THR CYS ARG HIS ALA ASN ILE VAL ALA TYR HIS GLY SEQRES 7 A 293 SER TYR LEU TRP LEU GLN LYS LEU TRP ILE CYS MET GLU SEQRES 8 A 293 PHE CYS GLY ALA GLY SER LEU GLN ASP ILE TYR GLN VAL SEQRES 9 A 293 THR GLY SER LEU SER GLU LEU GLN ILE SER TYR VAL CYS SEQRES 10 A 293 ARG GLU VAL LEU GLN GLY LEU ALA TYR LEU HIS SER GLN SEQRES 11 A 293 LYS LYS ILE HIS ARG ASP ILE LYS GLY ALA ASN ILE LEU SEQRES 12 A 293 ILE ASN ASP ALA GLY GLU VAL ARG LEU ALA ASP PHE GLY SEQRES 13 A 293 ILE SER ALA GLN ILE GLY ALA GLU LEU ALA ARG ARG LEU SEQRES 14 A 293 GLU PHE ILE GLY THR PRO TYR TRP MET ALA PRO GLU VAL SEQRES 15 A 293 ALA ALA VAL ALA LEU LYS GLY GLY TYR ASN GLU LEU CYS SEQRES 16 A 293 ASP ILE TRP SER LEU GLY ILE THR ALA ILE GLU LEU ALA SEQRES 17 A 293 GLU LEU GLN PRO PRO LEU PHE ASP VAL HIS PRO LEU ARG SEQRES 18 A 293 VAL LEU PHE LEU MET THR LYS SER GLY TYR GLN PRO PRO SEQRES 19 A 293 ARG LEU LYS GLU LYS GLY LYS TRP SER ALA ALA PHE HIS SEQRES 20 A 293 ASN PHE ILE LYS VAL THR LEU THR LYS SER PRO LYS LYS SEQRES 21 A 293 ARG PRO SER ALA THR LYS MET LEU SER HIS GLN LEU VAL SEQRES 22 A 293 SER GLN PRO GLY LEU ASN ARG GLY LEU ILE LEU ASP LEU SEQRES 23 A 293 LEU ASP LYS LEU LYS ASN PRO SEQRES 1 B 293 ASP VAL VAL ASP PRO ASP ILE PHE ASN ARG ASP PRO ARG SEQRES 2 B 293 ASP HIS TYR ASP LEU LEU GLN ARG LEU GLY GLY GLY THR SEQRES 3 B 293 TYR GLY GLU VAL PHE LYS ALA ARG ASP LYS VAL SER GLY SEQRES 4 B 293 ASP LEU VAL ALA LEU LYS MET VAL LYS MET GLU PRO ASP SEQRES 5 B 293 ASP ASP VAL SER THR LEU GLN LYS GLU ILE LEU ILE LEU SEQRES 6 B 293 LYS THR CYS ARG HIS ALA ASN ILE VAL ALA TYR HIS GLY SEQRES 7 B 293 SER TYR LEU TRP LEU GLN LYS LEU TRP ILE CYS MET GLU SEQRES 8 B 293 PHE CYS GLY ALA GLY SER LEU GLN ASP ILE TYR GLN VAL SEQRES 9 B 293 THR GLY SER LEU SER GLU LEU GLN ILE SER TYR VAL CYS SEQRES 10 B 293 ARG GLU VAL LEU GLN GLY LEU ALA TYR LEU HIS SER GLN SEQRES 11 B 293 LYS LYS ILE HIS ARG ASP ILE LYS GLY ALA ASN ILE LEU SEQRES 12 B 293 ILE ASN ASP ALA GLY GLU VAL ARG LEU ALA ASP PHE GLY SEQRES 13 B 293 ILE SER ALA GLN ILE GLY ALA GLU LEU ALA ARG ARG LEU SEQRES 14 B 293 GLU PHE ILE GLY THR PRO TYR TRP MET ALA PRO GLU VAL SEQRES 15 B 293 ALA ALA VAL ALA LEU LYS GLY GLY TYR ASN GLU LEU CYS SEQRES 16 B 293 ASP ILE TRP SER LEU GLY ILE THR ALA ILE GLU LEU ALA SEQRES 17 B 293 GLU LEU GLN PRO PRO LEU PHE ASP VAL HIS PRO LEU ARG SEQRES 18 B 293 VAL LEU PHE LEU MET THR LYS SER GLY TYR GLN PRO PRO SEQRES 19 B 293 ARG LEU LYS GLU LYS GLY LYS TRP SER ALA ALA PHE HIS SEQRES 20 B 293 ASN PHE ILE LYS VAL THR LEU THR LYS SER PRO LYS LYS SEQRES 21 B 293 ARG PRO SER ALA THR LYS MET LEU SER HIS GLN LEU VAL SEQRES 22 B 293 SER GLN PRO GLY LEU ASN ARG GLY LEU ILE LEU ASP LEU SEQRES 23 B 293 LEU ASP LYS LEU LYS ASN PRO HET YK1 A 301 35 HET YK1 B 301 35 HETNAM YK1 4-[2-FLUORO-6-(TRIFLUOROMETHYL)ANILINO]-2-[(6-METHOXY- HETNAM 2 YK1 2-METHYL-1,2,3,4-TETRAHYDROISOQUINOLIN-7-YL) HETNAM 3 YK1 AMINO]PYRIMIDINE-5-CARBOXAMIDE FORMUL 3 YK1 2(C23 H22 F4 N6 O2) FORMUL 5 HOH *350(H2 O) HELIX 1 AA1 ASP A 12 ASP A 15 5 4 HELIX 2 AA2 VAL A 56 CYS A 69 1 14 HELIX 3 AA3 SER A 98 GLY A 107 1 10 HELIX 4 AA4 SER A 110 GLN A 131 1 22 HELIX 5 AA5 LYS A 139 ALA A 141 5 3 HELIX 6 AA6 PHE A 156 PHE A 172 1 17 HELIX 7 AA7 ALA A 180 GLY A 190 1 11 HELIX 8 AA8 LEU A 195 LEU A 211 1 17 HELIX 9 AA9 HIS A 219 LYS A 229 1 11 HELIX 10 AB1 SER A 244 LEU A 255 1 12 HELIX 11 AB2 SER A 264 SER A 270 1 7 HELIX 12 AB3 ARG A 281 ASN A 293 1 13 HELIX 13 AB4 ASP B 12 ASP B 15 5 4 HELIX 14 AB5 VAL B 56 THR B 68 1 13 HELIX 15 AB6 LEU B 99 GLY B 107 1 9 HELIX 16 AB7 SER B 110 GLN B 131 1 22 HELIX 17 AB8 LYS B 139 ALA B 141 5 3 HELIX 18 AB9 PHE B 156 PHE B 172 1 17 HELIX 19 AC1 ALA B 180 GLY B 190 1 11 HELIX 20 AC2 LEU B 195 LEU B 211 1 17 HELIX 21 AC3 HIS B 219 LYS B 229 1 11 HELIX 22 AC4 GLU B 239 TRP B 243 5 5 HELIX 23 AC5 SER B 244 LEU B 255 1 12 HELIX 24 AC6 SER B 264 SER B 270 1 7 HELIX 25 AC7 HIS B 271 GLN B 276 1 6 HELIX 26 AC8 ARG B 281 LEU B 291 1 11 SHEET 1 AA1 5 TYR A 17 GLY A 24 0 SHEET 2 AA1 5 GLU A 30 ASP A 36 -1 O LYS A 33 N LEU A 20 SHEET 3 AA1 5 LEU A 42 LYS A 49 -1 O MET A 47 N GLU A 30 SHEET 4 AA1 5 LYS A 86 GLU A 92 -1 O LEU A 87 N VAL A 48 SHEET 5 AA1 5 TYR A 77 TRP A 83 -1 N HIS A 78 O CYS A 90 SHEET 1 AA2 2 ILE A 143 ILE A 145 0 SHEET 2 AA2 2 VAL A 151 LEU A 153 -1 O ARG A 152 N LEU A 144 SHEET 1 AA3 5 TYR B 17 GLY B 24 0 SHEET 2 AA3 5 GLU B 30 ASP B 36 -1 O LYS B 33 N LEU B 20 SHEET 3 AA3 5 LEU B 42 LYS B 49 -1 O MET B 47 N GLU B 30 SHEET 4 AA3 5 LYS B 86 GLU B 92 -1 O MET B 91 N ALA B 44 SHEET 5 AA3 5 TYR B 77 TRP B 83 -1 N HIS B 78 O CYS B 90 SHEET 1 AA4 3 GLY B 97 SER B 98 0 SHEET 2 AA4 3 ILE B 143 ILE B 145 -1 O ILE B 145 N GLY B 97 SHEET 3 AA4 3 VAL B 151 LEU B 153 -1 O ARG B 152 N LEU B 144 SITE 1 AC1 15 LEU A 23 GLY A 25 VAL A 31 MET A 91 SITE 2 AC1 15 GLU A 92 PHE A 93 CYS A 94 GLY A 95 SITE 3 AC1 15 GLY A 97 ASP A 101 ASN A 142 LEU A 144 SITE 4 AC1 15 ALA A 154 ASP A 155 HOH A 449 SITE 1 AC2 16 LEU B 23 GLY B 25 VAL B 31 VAL B 75 SITE 2 AC2 16 MET B 91 GLU B 92 PHE B 93 CYS B 94 SITE 3 AC2 16 GLY B 95 GLY B 97 ASP B 101 ASN B 142 SITE 4 AC2 16 LEU B 144 ALA B 154 ASP B 155 HOH B 447 CRYST1 51.168 56.994 63.459 86.73 86.63 67.06 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019543 -0.008272 -0.000846 0.00000 SCALE2 0.000000 0.019053 -0.000708 0.00000 SCALE3 0.000000 0.000000 0.015796 0.00000