HEADER VIRAL PROTEIN/HOST RECEPTOR 15-MAR-21 7M22 TITLE CRYO-EM STRUCTURE OF THE HCMV PENTAMER BOUND BY HUMAN NEUROPILIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN UL128; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: UL128; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ENVELOPE GLYCOPROTEIN UL130; COMPND 8 CHAIN: D; COMPND 9 SYNONYM: ORFL272C_UL130,UL130 PROTEIN; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: UL131A; COMPND 13 CHAIN: E; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: NEUROPILIN-2; COMPND 17 CHAIN: N; COMPND 18 SYNONYM: VASCULAR ENDOTHELIAL CELL GROWTH FACTOR 165 RECEPTOR 2; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN CYTOMEGALOVIRUS; SOURCE 3 ORGANISM_COMMON: HHV-5; SOURCE 4 ORGANISM_TAXID: 10359; SOURCE 5 GENE: UL128; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN CYTOMEGALOVIRUS; SOURCE 10 ORGANISM_COMMON: HHV-5; SOURCE 11 ORGANISM_TAXID: 10359; SOURCE 12 GENE: UL130; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HUMAN CYTOMEGALOVIRUS; SOURCE 17 ORGANISM_COMMON: HHV-5; SOURCE 18 ORGANISM_TAXID: 10359; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: NRP2, VEGF165R2; SOURCE 26 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HCMV PENTAMER, NRP2, CYTOMEGALOVIRUS, HOST RECEPTOR, VIRAL PROTEIN, KEYWDS 2 VIRAL PROTEIN-HOST RECEPTOR COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR D.WRAPP,J.S.MCLELLAN REVDAT 2 23-MAR-22 7M22 1 JRNL REVDAT 1 11-AUG-21 7M22 0 JRNL AUTH D.WRAPP,X.YE,Z.KU,H.SU,H.G.JONES,N.WANG,A.K.MISHRA, JRNL AUTH 2 D.C.FREED,F.LI,A.TANG,L.LI,D.K.JAIJYAN,H.ZHU,D.WANG,T.M.FU, JRNL AUTH 3 N.ZHANG,Z.AN,J.S.MCLELLAN JRNL TITL STRUCTURAL BASIS FOR HCMV PENTAMER RECOGNITION BY NEUROPILIN JRNL TITL 2 2 AND NEUTRALIZING ANTIBODIES. JRNL REF SCI ADV V. 8 M2546 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 35275718 JRNL DOI 10.1126/SCIADV.ABM2546 REMARK 2 REMARK 2 RESOLUTION. 3.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, WARP, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 5VOB REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.650 REMARK 3 NUMBER OF PARTICLES : 203130 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7M22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255514. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : THE ECTODOMAIN OF THE HCMV REMARK 245 PENTAMER BOUND BY DOMAINS REMARK 245 A1A2B1B2 OF HUMAN NEUROPILIN 2; REMARK 245 THE ECTODOMAIN OF THE HCMV REMARK 245 PENTAMER; DOMAINS A1A2B1B2 OF REMARK 245 HUMAN NEUROPILIN 2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.40 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : GRID WAS BLOTTED WITH A FORCE REMARK 245 OF -6 FOR 3 SECONDS REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : THE PRIMARY MAP IS THE RESULT REMARK 245 OF A FOCUSED REFINEMENT THAT ENCOMPASSES THE HCMV UL PROTEINS REMARK 245 (UL128, UL130, UL131) AND NRP2 DOMAINS A2B1B2. THE INCLUDED REMARK 245 ADDITIONAL MAP IS THE NON-FOCUSED REFINEMENT IN WHICH THE ENTIRE REMARK 245 HCMV PENTAMER ECTODOMAIN AND THE ENTIRETY OF NRP2 A1A2B1B2 CAN REMARK 245 BE OBSERVED. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 8000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : COLLECTED FROM A SINGLE GRID REMARK 245 AT -30 DEGREES TILT REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 28 REMARK 465 GLU C 136 REMARK 465 TYR C 137 REMARK 465 ASP C 138 REMARK 465 LYS C 139 REMARK 465 ILE C 140 REMARK 465 THR C 141 REMARK 465 ARG C 142 REMARK 465 ILE C 143 REMARK 465 VAL C 144 REMARK 465 GLY C 145 REMARK 465 LEU C 146 REMARK 465 ASP C 147 REMARK 465 GLN C 148 REMARK 465 TYR C 149 REMARK 465 LEU C 150 REMARK 465 GLU C 151 REMARK 465 SER C 152 REMARK 465 VAL C 153 REMARK 465 LYS C 154 REMARK 465 LYS C 155 REMARK 465 HIS C 156 REMARK 465 LYS C 157 REMARK 465 ARG C 158 REMARK 465 LEU C 159 REMARK 465 ASP C 160 REMARK 465 VAL C 161 REMARK 465 CYS C 162 REMARK 465 ARG C 163 REMARK 465 ALA C 164 REMARK 465 LYS C 165 REMARK 465 MET C 166 REMARK 465 GLY C 167 REMARK 465 TYR C 168 REMARK 465 MET C 169 REMARK 465 LEU C 170 REMARK 465 GLN C 171 REMARK 465 SER D 26 REMARK 465 PRO D 27 REMARK 465 TRP D 28 REMARK 465 SER D 29 REMARK 465 THR D 30 REMARK 465 LEU D 31 REMARK 465 THR D 32 REMARK 465 ALA D 33 REMARK 465 ASN D 34 REMARK 465 GLN D 35 REMARK 465 ASN D 36 REMARK 465 PRO D 37 REMARK 465 SER D 38 REMARK 465 PRO D 39 REMARK 465 PRO D 40 REMARK 465 TRP D 41 REMARK 465 SER D 42 REMARK 465 LYS D 43 REMARK 465 LEU D 44 REMARK 465 THR D 45 REMARK 465 TYR D 46 REMARK 465 SER D 47 REMARK 465 LYS D 48 REMARK 465 PRO D 49 REMARK 465 HIS D 50 REMARK 465 ASP D 51 REMARK 465 ALA D 52 REMARK 465 ALA D 53 REMARK 465 THR D 54 REMARK 465 PHE D 55 REMARK 465 TYR D 56 REMARK 465 CYS D 57 REMARK 465 PRO D 58 REMARK 465 PHE D 59 REMARK 465 LEU D 60 REMARK 465 TYR D 61 REMARK 465 PRO D 62 REMARK 465 SER D 63 REMARK 465 PRO D 64 REMARK 465 PRO D 65 REMARK 465 ARG D 66 REMARK 465 SER D 67 REMARK 465 PRO D 68 REMARK 465 LEU D 69 REMARK 465 GLN D 70 REMARK 465 PHE D 71 REMARK 465 SER D 72 REMARK 465 GLY D 73 REMARK 465 PHE D 74 REMARK 465 GLN D 75 REMARK 465 GLN D 76 REMARK 465 VAL D 77 REMARK 465 SER D 78 REMARK 465 THR D 79 REMARK 465 GLY D 80 REMARK 465 PRO D 81 REMARK 465 GLU D 82 REMARK 465 CYS D 83 REMARK 465 ARG D 84 REMARK 465 ASN D 85 REMARK 465 GLU D 86 REMARK 465 THR D 87 REMARK 465 LEU D 88 REMARK 465 TYR D 89 REMARK 465 LEU D 90 REMARK 465 LEU D 91 REMARK 465 TYR D 92 REMARK 465 ASN D 93 REMARK 465 ARG D 94 REMARK 465 GLU D 95 REMARK 465 GLY D 96 REMARK 465 GLN D 97 REMARK 465 THR D 98 REMARK 465 LEU D 99 REMARK 465 VAL D 100 REMARK 465 GLU D 101 REMARK 465 ARG D 102 REMARK 465 SER D 103 REMARK 465 THR E 101 REMARK 465 ASN E 102 REMARK 465 LYS E 103 REMARK 465 GLN N 23 REMARK 465 PRO N 24 REMARK 465 ASP N 25 REMARK 465 PRO N 26 REMARK 465 PRO N 27 REMARK 465 CYS N 28 REMARK 465 GLY N 29 REMARK 465 GLY N 30 REMARK 465 ARG N 31 REMARK 465 LEU N 32 REMARK 465 ASN N 33 REMARK 465 SER N 34 REMARK 465 LYS N 35 REMARK 465 ASP N 36 REMARK 465 ALA N 37 REMARK 465 GLY N 38 REMARK 465 TYR N 39 REMARK 465 ILE N 40 REMARK 465 THR N 41 REMARK 465 SER N 42 REMARK 465 PRO N 43 REMARK 465 GLY N 44 REMARK 465 TYR N 45 REMARK 465 PRO N 46 REMARK 465 GLN N 47 REMARK 465 ASP N 48 REMARK 465 TYR N 49 REMARK 465 PRO N 50 REMARK 465 SER N 51 REMARK 465 HIS N 52 REMARK 465 GLN N 53 REMARK 465 ASN N 54 REMARK 465 CYS N 55 REMARK 465 GLU N 56 REMARK 465 TRP N 57 REMARK 465 ILE N 58 REMARK 465 VAL N 59 REMARK 465 TYR N 60 REMARK 465 ALA N 61 REMARK 465 PRO N 62 REMARK 465 GLU N 63 REMARK 465 PRO N 64 REMARK 465 ASN N 65 REMARK 465 GLN N 66 REMARK 465 LYS N 67 REMARK 465 ILE N 68 REMARK 465 VAL N 69 REMARK 465 LEU N 70 REMARK 465 ASN N 71 REMARK 465 PHE N 72 REMARK 465 ASN N 73 REMARK 465 PRO N 74 REMARK 465 HIS N 75 REMARK 465 PHE N 76 REMARK 465 GLU N 77 REMARK 465 ILE N 78 REMARK 465 GLU N 79 REMARK 465 LYS N 80 REMARK 465 HIS N 81 REMARK 465 ASP N 82 REMARK 465 CYS N 83 REMARK 465 LYS N 84 REMARK 465 TYR N 85 REMARK 465 ASP N 86 REMARK 465 PHE N 87 REMARK 465 ILE N 88 REMARK 465 GLU N 89 REMARK 465 ILE N 90 REMARK 465 ARG N 91 REMARK 465 ASP N 92 REMARK 465 GLY N 93 REMARK 465 ASP N 94 REMARK 465 SER N 95 REMARK 465 GLU N 96 REMARK 465 SER N 97 REMARK 465 ALA N 98 REMARK 465 ASP N 99 REMARK 465 LEU N 100 REMARK 465 LEU N 101 REMARK 465 GLY N 102 REMARK 465 LYS N 103 REMARK 465 HIS N 104 REMARK 465 CYS N 105 REMARK 465 GLY N 106 REMARK 465 ASN N 107 REMARK 465 ILE N 108 REMARK 465 ALA N 109 REMARK 465 PRO N 110 REMARK 465 PRO N 111 REMARK 465 THR N 112 REMARK 465 ILE N 113 REMARK 465 ILE N 114 REMARK 465 SER N 115 REMARK 465 SER N 116 REMARK 465 GLY N 117 REMARK 465 SER N 118 REMARK 465 MET N 119 REMARK 465 LEU N 120 REMARK 465 TYR N 121 REMARK 465 ILE N 122 REMARK 465 LYS N 123 REMARK 465 PHE N 124 REMARK 465 THR N 125 REMARK 465 SER N 126 REMARK 465 ASP N 127 REMARK 465 TYR N 128 REMARK 465 ALA N 129 REMARK 465 ARG N 130 REMARK 465 GLN N 131 REMARK 465 GLY N 132 REMARK 465 ALA N 133 REMARK 465 GLY N 134 REMARK 465 PHE N 135 REMARK 465 SER N 136 REMARK 465 LEU N 137 REMARK 465 ARG N 138 REMARK 465 TYR N 139 REMARK 465 GLU N 140 REMARK 465 ILE N 141 REMARK 465 PHE N 142 REMARK 465 LYS N 143 REMARK 465 THR N 144 REMARK 465 GLY N 145 REMARK 465 SER N 146 REMARK 465 GLU N 147 REMARK 465 ASP N 199 REMARK 465 PRO N 200 REMARK 465 LEU N 201 REMARK 465 GLN N 202 REMARK 465 VAL N 203 REMARK 465 GLY N 204 REMARK 465 GLU N 205 REMARK 465 GLY N 206 REMARK 465 GLN N 269 REMARK 465 GLU N 270 REMARK 465 PRO N 271 REMARK 465 LEU N 272 REMARK 465 GLU N 273 REMARK 465 ASN N 274 REMARK 465 PHE N 275 REMARK 465 GLY N 508 REMARK 465 GLY N 509 REMARK 465 ASP N 510 REMARK 465 SER N 511 REMARK 465 ILE N 512 REMARK 465 THR N 513 REMARK 465 ALA N 514 REMARK 465 VAL N 515 REMARK 465 GLU N 516 REMARK 465 TRP N 594 REMARK 465 THR N 595 REMARK 465 GLY N 596 REMARK 465 SER N 597 REMARK 465 LEU N 598 REMARK 465 GLU N 599 REMARK 465 VAL N 600 REMARK 465 LEU N 601 REMARK 465 PHE N 602 REMARK 465 GLN N 603 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 47 OD2 ASP N 252 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 98 -1.43 67.22 REMARK 500 TYR C 120 48.93 -88.94 REMARK 500 SER D 133 -90.86 -123.00 REMARK 500 ASP N 174 44.05 -145.04 REMARK 500 ASP N 195 88.12 -155.17 REMARK 500 TYR N 210 -64.96 -109.04 REMARK 500 TRP N 304 46.22 -143.44 REMARK 500 ASN N 368 -20.84 -140.52 REMARK 500 ALA N 386 -169.70 -128.89 REMARK 500 GLN N 412 -41.92 -131.78 REMARK 500 SER N 416 73.94 -155.36 REMARK 500 CYS N 434 7.38 -151.20 REMARK 500 GLN N 480 50.04 -107.71 REMARK 500 LYS N 533 18.66 53.78 REMARK 500 GLN N 569 -34.48 -135.92 REMARK 500 GLU N 576 -13.93 -140.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA N 700 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP N 211 OD1 REMARK 620 2 ASP N 211 OD2 56.3 REMARK 620 3 ASP N 252 OD1 102.4 149.3 REMARK 620 4 ASP N 252 OD2 89.1 136.0 54.6 REMARK 620 5 VAL N 255 O 134.3 89.1 93.8 133.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-23629 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE HCMV PENTAMER BOUND BY HUMAN NEUROPILIN 2 DBREF 7M22 C 28 171 UNP C8BLJ3 C8BLJ3_HCMV 28 171 DBREF1 7M22 D 26 214 UNP A0A0G2TB82_HCMV DBREF2 7M22 D A0A0G2TB82 26 214 DBREF 7M22 E 19 129 UNP Q38M21 Q38M21_HCMV 19 129 DBREF 7M22 N 23 595 UNP O60462 NRP2_HUMAN 23 595 SEQADV 7M22 GLY N 596 UNP O60462 EXPRESSION TAG SEQADV 7M22 SER N 597 UNP O60462 EXPRESSION TAG SEQADV 7M22 LEU N 598 UNP O60462 EXPRESSION TAG SEQADV 7M22 GLU N 599 UNP O60462 EXPRESSION TAG SEQADV 7M22 VAL N 600 UNP O60462 EXPRESSION TAG SEQADV 7M22 LEU N 601 UNP O60462 EXPRESSION TAG SEQADV 7M22 PHE N 602 UNP O60462 EXPRESSION TAG SEQADV 7M22 GLN N 603 UNP O60462 EXPRESSION TAG SEQRES 1 C 144 GLU GLU CYS CYS GLU PHE ILE ASN VAL ASN HIS PRO PRO SEQRES 2 C 144 GLU ARG CYS TYR ASP PHE LYS MET CYS ASN ARG PHE THR SEQRES 3 C 144 VAL ALA LEU ARG CYS PRO ASP GLY GLU VAL CYS TYR SER SEQRES 4 C 144 PRO GLU LYS THR ALA GLU ILE ARG GLY ILE VAL THR THR SEQRES 5 C 144 MET THR HIS SER LEU THR ARG GLN VAL VAL HIS ASN LYS SEQRES 6 C 144 LEU THR SER CYS ASN TYR ASN PRO LEU TYR LEU GLU ALA SEQRES 7 C 144 ASP GLY ARG ILE ARG CYS GLY LYS VAL ASN ASP LYS ALA SEQRES 8 C 144 GLN TYR LEU LEU GLY ALA ALA GLY SER VAL PRO TYR ARG SEQRES 9 C 144 TRP ILE ASN LEU GLU TYR ASP LYS ILE THR ARG ILE VAL SEQRES 10 C 144 GLY LEU ASP GLN TYR LEU GLU SER VAL LYS LYS HIS LYS SEQRES 11 C 144 ARG LEU ASP VAL CYS ARG ALA LYS MET GLY TYR MET LEU SEQRES 12 C 144 GLN SEQRES 1 D 189 SER PRO TRP SER THR LEU THR ALA ASN GLN ASN PRO SER SEQRES 2 D 189 PRO PRO TRP SER LYS LEU THR TYR SER LYS PRO HIS ASP SEQRES 3 D 189 ALA ALA THR PHE TYR CYS PRO PHE LEU TYR PRO SER PRO SEQRES 4 D 189 PRO ARG SER PRO LEU GLN PHE SER GLY PHE GLN GLN VAL SEQRES 5 D 189 SER THR GLY PRO GLU CYS ARG ASN GLU THR LEU TYR LEU SEQRES 6 D 189 LEU TYR ASN ARG GLU GLY GLN THR LEU VAL GLU ARG SER SEQRES 7 D 189 SER THR TRP VAL LYS LYS VAL ILE TRP TYR LEU SER GLY SEQRES 8 D 189 ARG ASN GLN THR ILE LEU GLN ARG MET PRO GLN THR ALA SEQRES 9 D 189 SER LYS PRO SER ASP GLY ASN VAL GLN ILE SER VAL GLU SEQRES 10 D 189 ASP ALA LYS ILE PHE GLY ALA HIS MET VAL PRO LYS GLN SEQRES 11 D 189 THR LYS LEU LEU ARG PHE VAL VAL ASN ASP GLY THR ARG SEQRES 12 D 189 TYR GLN MET CYS VAL MET LYS LEU GLU SER TRP ALA HIS SEQRES 13 D 189 VAL PHE ARG ASP TYR SER VAL SER PHE GLN VAL ARG LEU SEQRES 14 D 189 THR PHE THR GLU ALA ASN ASN GLN THR TYR THR PHE CYS SEQRES 15 D 189 THR HIS PRO ASN LEU ILE VAL SEQRES 1 E 111 GLN CYS GLN ARG GLU THR ALA GLU LYS ASN ASP TYR TYR SEQRES 2 E 111 ARG VAL PRO HIS TYR TRP ASP ALA CYS SER ARG ALA LEU SEQRES 3 E 111 PRO ASP GLN THR ARG TYR LYS TYR VAL GLU GLN LEU VAL SEQRES 4 E 111 ASP LEU THR LEU ASN TYR HIS TYR ASP ALA SER HIS GLY SEQRES 5 E 111 LEU ASP ASN PHE ASP VAL LEU LYS ARG ILE ASN VAL THR SEQRES 6 E 111 GLU VAL SER LEU LEU ILE SER ASP PHE ARG ARG GLN ASN SEQRES 7 E 111 ARG ARG GLY GLY THR ASN LYS ARG THR THR PHE ASN ALA SEQRES 8 E 111 ALA GLY SER LEU ALA PRO HIS ALA ARG SER LEU GLU PHE SEQRES 9 E 111 SER VAL ARG LEU PHE ALA ASN SEQRES 1 N 581 GLN PRO ASP PRO PRO CYS GLY GLY ARG LEU ASN SER LYS SEQRES 2 N 581 ASP ALA GLY TYR ILE THR SER PRO GLY TYR PRO GLN ASP SEQRES 3 N 581 TYR PRO SER HIS GLN ASN CYS GLU TRP ILE VAL TYR ALA SEQRES 4 N 581 PRO GLU PRO ASN GLN LYS ILE VAL LEU ASN PHE ASN PRO SEQRES 5 N 581 HIS PHE GLU ILE GLU LYS HIS ASP CYS LYS TYR ASP PHE SEQRES 6 N 581 ILE GLU ILE ARG ASP GLY ASP SER GLU SER ALA ASP LEU SEQRES 7 N 581 LEU GLY LYS HIS CYS GLY ASN ILE ALA PRO PRO THR ILE SEQRES 8 N 581 ILE SER SER GLY SER MET LEU TYR ILE LYS PHE THR SER SEQRES 9 N 581 ASP TYR ALA ARG GLN GLY ALA GLY PHE SER LEU ARG TYR SEQRES 10 N 581 GLU ILE PHE LYS THR GLY SER GLU ASP CYS SER LYS ASN SEQRES 11 N 581 PHE THR SER PRO ASN GLY THR ILE GLU SER PRO GLY PHE SEQRES 12 N 581 PRO GLU LYS TYR PRO HIS ASN LEU ASP CYS THR PHE THR SEQRES 13 N 581 ILE LEU ALA LYS PRO LYS MET GLU ILE ILE LEU GLN PHE SEQRES 14 N 581 LEU ILE PHE ASP LEU GLU HIS ASP PRO LEU GLN VAL GLY SEQRES 15 N 581 GLU GLY ASP CYS LYS TYR ASP TRP LEU ASP ILE TRP ASP SEQRES 16 N 581 GLY ILE PRO HIS VAL GLY PRO LEU ILE GLY LYS TYR CYS SEQRES 17 N 581 GLY THR LYS THR PRO SER GLU LEU ARG SER SER THR GLY SEQRES 18 N 581 ILE LEU SER LEU THR PHE HIS THR ASP MET ALA VAL ALA SEQRES 19 N 581 LYS ASP GLY PHE SER ALA ARG TYR TYR LEU VAL HIS GLN SEQRES 20 N 581 GLU PRO LEU GLU ASN PHE GLN CYS ASN VAL PRO LEU GLY SEQRES 21 N 581 MET GLU SER GLY ARG ILE ALA ASN GLU GLN ILE SER ALA SEQRES 22 N 581 SER SER THR TYR SER ASP GLY ARG TRP THR PRO GLN GLN SEQRES 23 N 581 SER ARG LEU HIS GLY ASP ASP ASN GLY TRP THR PRO ASN SEQRES 24 N 581 LEU ASP SER ASN LYS GLU TYR LEU GLN VAL ASP LEU ARG SEQRES 25 N 581 PHE LEU THR MET LEU THR ALA ILE ALA THR GLN GLY ALA SEQRES 26 N 581 ILE SER ARG GLU THR GLN ASN GLY TYR TYR VAL LYS SER SEQRES 27 N 581 TYR LYS LEU GLU VAL SER THR ASN GLY GLU ASP TRP MET SEQRES 28 N 581 VAL TYR ARG HIS GLY LYS ASN HIS LYS VAL PHE GLN ALA SEQRES 29 N 581 ASN ASN ASP ALA THR GLU VAL VAL LEU ASN LYS LEU HIS SEQRES 30 N 581 ALA PRO LEU LEU THR ARG PHE VAL ARG ILE ARG PRO GLN SEQRES 31 N 581 THR TRP HIS SER GLY ILE ALA LEU ARG LEU GLU LEU PHE SEQRES 32 N 581 GLY CYS ARG VAL THR ASP ALA PRO CYS SER ASN MET LEU SEQRES 33 N 581 GLY MET LEU SER GLY LEU ILE ALA ASP SER GLN ILE SER SEQRES 34 N 581 ALA SER SER THR GLN GLU TYR LEU TRP SER PRO SER ALA SEQRES 35 N 581 ALA ARG LEU VAL SER SER ARG SER GLY TRP PHE PRO ARG SEQRES 36 N 581 ILE PRO GLN ALA GLN PRO GLY GLU GLU TRP LEU GLN VAL SEQRES 37 N 581 ASP LEU GLY THR PRO LYS THR VAL LYS GLY VAL ILE ILE SEQRES 38 N 581 GLN GLY ALA ARG GLY GLY ASP SER ILE THR ALA VAL GLU SEQRES 39 N 581 ALA ARG ALA PHE VAL ARG LYS PHE LYS VAL SER TYR SER SEQRES 40 N 581 LEU ASN GLY LYS ASP TRP GLU TYR ILE GLN ASP PRO ARG SEQRES 41 N 581 THR GLN GLN PRO LYS LEU PHE GLU GLY ASN MET HIS TYR SEQRES 42 N 581 ASP THR PRO ASP ILE ARG ARG PHE ASP PRO ILE PRO ALA SEQRES 43 N 581 GLN TYR VAL ARG VAL TYR PRO GLU ARG TRP SER PRO ALA SEQRES 44 N 581 GLY ILE GLY MET ARG LEU GLU VAL LEU GLY CYS ASP TRP SEQRES 45 N 581 THR GLY SER LEU GLU VAL LEU PHE GLN HET NAG E 201 14 HET CA N 700 1 HET NAG N 701 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 2(C8 H15 N O6) FORMUL 6 CA CA 2+ HELIX 1 AA1 ALA C 71 THR C 81 1 11 HELIX 2 AA2 HIS C 82 LEU C 84 5 3 HELIX 3 AA3 THR C 85 LYS C 92 1 8 HELIX 4 AA4 LEU C 93 ASN C 97 5 5 HELIX 5 AA5 LYS C 117 GLN C 119 5 3 HELIX 6 AA6 THR D 105 ASN D 118 1 14 HELIX 7 AA7 GLN D 119 ALA D 129 1 11 HELIX 8 AA8 SER D 140 ALA D 149 1 10 HELIX 9 AA9 GLN E 21 GLU E 26 1 6 HELIX 10 AB1 HIS E 35 SER E 41 1 7 HELIX 11 AB2 PRO E 45 HIS E 69 1 25 HELIX 12 AB3 ASN E 73 LYS E 78 1 6 HELIX 13 AB4 ASN E 81 GLN E 95 1 15 HELIX 14 AB5 ALA N 289 GLU N 291 5 3 HELIX 15 AB6 THR N 305 ARG N 310 5 6 HELIX 16 AB7 ARG N 428 ALA N 432 5 5 HELIX 17 AB8 ALA N 446 SER N 448 5 3 HELIX 18 AB9 SER N 461 ARG N 466 5 6 SHEET 1 AA1 3 ASP C 45 MET C 48 0 SHEET 2 AA1 3 VAL C 54 ARG C 57 -1 O ALA C 55 N LYS C 47 SHEET 3 AA1 3 VAL C 63 TYR C 65 -1 O TYR C 65 N VAL C 54 SHEET 1 AA2 3 ILE C 109 CYS C 111 0 SHEET 2 AA2 3 LEU C 101 LEU C 103 -1 N TYR C 102 O ARG C 110 SHEET 3 AA2 3 LEU C 121 LEU C 122 -1 O LEU C 122 N LEU C 101 SHEET 1 AA3 7 TYR C 130 ILE C 133 0 SHEET 2 AA3 7 GLN D 155 ASP D 165 -1 O ARG D 160 N ILE C 133 SHEET 3 AA3 7 ARG D 168 VAL D 182 -1 O MET D 174 N LEU D 159 SHEET 4 AA3 7 VAL D 188 GLU D 198 -1 O SER D 189 N HIS D 181 SHEET 5 AA3 7 ALA E 117 LEU E 126 -1 O LEU E 120 N LEU D 194 SHEET 6 AA3 7 PHE E 107 LEU E 113 -1 N ALA E 110 O GLU E 121 SHEET 7 AA3 7 ARG E 97 ARG E 98 -1 N ARG E 97 O ALA E 109 SHEET 1 AA4 5 ASN N 152 PHE N 153 0 SHEET 2 AA4 5 ASP N 174 LEU N 180 1 O THR N 178 N PHE N 153 SHEET 3 AA4 5 ILE N 244 HIS N 250 -1 O PHE N 249 N CYS N 175 SHEET 4 AA4 5 TRP N 212 TRP N 216 -1 N TRP N 216 O SER N 246 SHEET 5 AA4 5 LEU N 225 TYR N 229 -1 O ILE N 226 N ILE N 215 SHEET 1 AA5 4 GLY N 158 GLU N 161 0 SHEET 2 AA5 4 GLY N 259 VAL N 267 -1 O ALA N 262 N ILE N 160 SHEET 3 AA5 4 GLU N 186 ASP N 195 -1 N LEU N 192 O SER N 261 SHEET 4 AA5 4 LEU N 238 SER N 240 -1 O LEU N 238 N LEU N 189 SHEET 1 AA6 6 VAL N 279 PRO N 280 0 SHEET 2 AA6 6 ARG N 421 CYS N 427 -1 O GLY N 426 N VAL N 279 SHEET 3 AA6 6 LEU N 329 GLN N 345 -1 N GLN N 345 O ARG N 421 SHEET 4 AA6 6 VAL N 394 TRP N 414 -1 O LEU N 398 N THR N 340 SHEET 5 AA6 6 VAL N 358 SER N 366 -1 N GLU N 364 O ARG N 408 SHEET 6 AA6 6 MET N 373 VAL N 374 -1 O MET N 373 N VAL N 365 SHEET 1 AA7 5 ILE N 293 ALA N 295 0 SHEET 2 AA7 5 LEU N 329 GLN N 345 -1 O GLN N 330 N SER N 294 SHEET 3 AA7 5 VAL N 394 TRP N 414 -1 O LEU N 398 N THR N 340 SHEET 4 AA7 5 VAL N 358 SER N 366 -1 N GLU N 364 O ARG N 408 SHEET 5 AA7 5 PHE N 384 GLN N 385 -1 O PHE N 384 N TYR N 361 SHEET 1 AA8 2 ALA N 347 ILE N 348 0 SHEET 2 AA8 2 GLY N 355 TYR N 356 -1 O TYR N 356 N ALA N 347 SHEET 1 AA9 6 ASN N 436 MET N 437 0 SHEET 2 AA9 6 ARG N 586 CYS N 592 -1 O GLY N 591 N ASN N 436 SHEET 3 AA9 6 LEU N 488 GLN N 504 -1 N GLY N 500 O LEU N 590 SHEET 4 AA9 6 ASP N 559 TRP N 578 -1 O ALA N 568 N LYS N 496 SHEET 5 AA9 6 VAL N 521 SER N 529 -1 N LYS N 523 O GLU N 576 SHEET 6 AA9 6 GLU N 536 TYR N 537 -1 O GLU N 536 N TYR N 528 SHEET 1 AB1 5 ILE N 450 ALA N 452 0 SHEET 2 AB1 5 LEU N 488 GLN N 504 -1 O GLN N 489 N SER N 451 SHEET 3 AB1 5 ASP N 559 TRP N 578 -1 O ALA N 568 N LYS N 496 SHEET 4 AB1 5 VAL N 521 SER N 529 -1 N LYS N 523 O GLU N 576 SHEET 5 AB1 5 PHE N 549 GLU N 550 -1 O PHE N 549 N PHE N 524 SSBOND 1 CYS C 30 CYS C 49 1555 1555 2.03 SSBOND 2 CYS C 31 CYS C 64 1555 1555 2.04 SSBOND 3 CYS C 43 CYS C 58 1555 1555 2.03 SSBOND 4 CYS C 96 CYS C 111 1555 1555 2.03 SSBOND 5 CYS D 172 CYS D 207 1555 1555 2.03 SSBOND 6 CYS E 20 CYS E 40 1555 1555 2.03 SSBOND 7 CYS N 149 CYS N 175 1555 1555 2.03 SSBOND 8 CYS N 208 CYS N 230 1555 1555 2.03 SSBOND 9 CYS N 277 CYS N 427 1555 1555 2.04 SSBOND 10 CYS N 434 CYS N 592 1555 1555 2.04 LINK ND2 ASN E 81 C1 NAG E 201 1555 1555 1.43 LINK ND2 ASN N 157 C1 NAG N 701 1555 1555 1.44 LINK OD1 ASP N 211 CA CA N 700 1555 1555 2.39 LINK OD2 ASP N 211 CA CA N 700 1555 1555 2.24 LINK OD1 ASP N 252 CA CA N 700 1555 1555 2.32 LINK OD2 ASP N 252 CA CA N 700 1555 1555 2.42 LINK O VAL N 255 CA CA N 700 1555 1555 2.23 CISPEP 1 PHE N 165 PRO N 166 0 16.60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000