HEADER SIGNALING PROTEIN/TRANSFERASE 18-MAR-21 7M3Q TITLE STRUCTURE OF THE SMURF2 HECT DOMAIN WITH A HIGH AFFINITY UBIQUITIN TITLE 2 VARIANT (UBV) COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE SMURF2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSMURF2,HECT-TYPE E3 UBIQUITIN TRANSFERASE SMURF2,SMAD COMPND 5 UBIQUITINATION REGULATORY FACTOR 2,SMAD-SPECIFIC E3 UBIQUITIN-PROTEIN COMPND 6 LIGASE 2; COMPND 7 EC: 2.3.2.26; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: UBIQUITIN VARIANT; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMURF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: UBA52, UBCEP2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET53 KEYWDS HIGH-AFFINITY, SIGNALING PROTEIN, SIGNALING PROTEIN-TRANSFERASE KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.CHOWDHURY,A.U.SINGER,A.A.OGUNJIMI,J.TEYRA,W.ZHANG,F.SICHERI, AUTHOR 2 S.S.SIDHU REVDAT 3 25-DEC-24 7M3Q 1 REMARK LINK REVDAT 2 18-OCT-23 7M3Q 1 REMARK REVDAT 1 21-APR-21 7M3Q 0 JRNL AUTH A.CHOWDHURY,A.U.SINGER,A.A.OGUNJIMI,J.TEYRA,J.CHUNG, JRNL AUTH 2 J.L.WRANA,W.ZHANG,F.SICHERI,S.S.SACHDEV JRNL TITL STRUCTURE OF THE SMURF2 HECT DOMAIN WITH A HIGH AFFINITY JRNL TITL 2 UBIQUITIN VARIANT (UBV) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 24076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 67.8300 - 5.2000 0.98 2616 110 0.1735 0.1838 REMARK 3 2 5.2000 - 4.1300 0.98 2516 147 0.1567 0.1921 REMARK 3 3 4.1300 - 3.6100 0.99 2529 145 0.1878 0.2304 REMARK 3 4 3.6100 - 3.2800 0.99 2519 130 0.2246 0.2528 REMARK 3 5 3.2800 - 3.0400 0.99 2552 116 0.2554 0.2777 REMARK 3 6 3.0400 - 2.8600 0.99 2533 138 0.2917 0.3846 REMARK 3 7 2.8600 - 2.7200 1.00 2522 135 0.2568 0.2763 REMARK 3 8 2.7200 - 2.6000 1.00 2544 150 0.2500 0.2481 REMARK 3 9 2.6000 - 2.5000 1.00 2544 130 0.2666 0.3083 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.327 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.435 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3763 REMARK 3 ANGLE : 1.144 5099 REMARK 3 CHIRALITY : 0.064 554 REMARK 3 PLANARITY : 0.008 656 REMARK 3 DIHEDRAL : 24.585 1391 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 369 THROUGH 618 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4144 11.2099 13.9135 REMARK 3 T TENSOR REMARK 3 T11: 0.3931 T22: 0.3796 REMARK 3 T33: 0.3849 T12: -0.0080 REMARK 3 T13: -0.0769 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 4.3739 L22: 0.5486 REMARK 3 L33: 1.4193 L12: -0.2352 REMARK 3 L13: -1.8310 L23: -0.1498 REMARK 3 S TENSOR REMARK 3 S11: 0.1546 S12: -0.2284 S13: 0.1630 REMARK 3 S21: 0.0483 S22: -0.0193 S23: 0.1393 REMARK 3 S31: -0.0179 S32: 0.0312 S33: -0.1520 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 619 THROUGH 741 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.3363 5.9081 30.4432 REMARK 3 T TENSOR REMARK 3 T11: 0.4177 T22: 0.2498 REMARK 3 T33: 0.4000 T12: 0.0428 REMARK 3 T13: 0.0411 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 7.7006 L22: 2.8504 REMARK 3 L33: 4.8745 L12: 1.5318 REMARK 3 L13: 3.7088 L23: 1.2291 REMARK 3 S TENSOR REMARK 3 S11: -0.0985 S12: 0.2210 S13: -0.1790 REMARK 3 S21: -0.3645 S22: 0.0702 S23: -0.3915 REMARK 3 S31: -0.0505 S32: 0.1835 S33: 0.0052 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3832 27.4687 34.9020 REMARK 3 T TENSOR REMARK 3 T11: 0.7630 T22: 1.4801 REMARK 3 T33: 1.6629 T12: -0.2887 REMARK 3 T13: 0.1603 T23: -0.7515 REMARK 3 L TENSOR REMARK 3 L11: 1.4192 L22: 2.5906 REMARK 3 L33: 4.0244 L12: -1.9224 REMARK 3 L13: 2.4001 L23: -3.2403 REMARK 3 S TENSOR REMARK 3 S11: -0.6171 S12: -1.2334 S13: 1.0037 REMARK 3 S21: -0.0670 S22: 0.8104 S23: -1.4154 REMARK 3 S31: -1.6478 S32: 2.0086 S33: 0.1172 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2147 28.4757 31.9372 REMARK 3 T TENSOR REMARK 3 T11: 0.9772 T22: 1.0170 REMARK 3 T33: 1.3555 T12: -0.2220 REMARK 3 T13: 0.1981 T23: -0.4623 REMARK 3 L TENSOR REMARK 3 L11: 5.4255 L22: 8.9295 REMARK 3 L33: 2.7892 L12: -0.7816 REMARK 3 L13: 1.6447 L23: 4.2618 REMARK 3 S TENSOR REMARK 3 S11: -0.3030 S12: -0.9064 S13: 1.8960 REMARK 3 S21: 0.1440 S22: 0.9159 S23: -1.2577 REMARK 3 S31: -1.8580 S32: 1.3887 S33: -0.4410 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3971 32.1695 47.3126 REMARK 3 T TENSOR REMARK 3 T11: 1.1196 T22: 2.4224 REMARK 3 T33: 2.0499 T12: -0.1699 REMARK 3 T13: -0.2348 T23: -0.9608 REMARK 3 L TENSOR REMARK 3 L11: -0.0011 L22: 0.0371 REMARK 3 L33: 0.0001 L12: 0.0024 REMARK 3 L13: 0.0008 L23: 0.0108 REMARK 3 S TENSOR REMARK 3 S11: 0.7070 S12: -1.3476 S13: 0.5397 REMARK 3 S21: 1.1383 S22: -0.5177 S23: -0.8998 REMARK 3 S31: -0.2420 S32: 0.3090 S33: -0.2038 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3011 32.4128 42.3333 REMARK 3 T TENSOR REMARK 3 T11: 1.1773 T22: 1.5436 REMARK 3 T33: 1.5461 T12: -0.1334 REMARK 3 T13: 0.3205 T23: -0.7505 REMARK 3 L TENSOR REMARK 3 L11: 6.7807 L22: 4.7895 REMARK 3 L33: 5.0249 L12: -0.7458 REMARK 3 L13: 1.2700 L23: -0.5110 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: -1.5873 S13: 1.2627 REMARK 3 S21: 1.1093 S22: 0.5289 S23: 0.5975 REMARK 3 S31: -1.7415 S32: 0.7750 S33: -0.4696 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4834 25.9893 40.2266 REMARK 3 T TENSOR REMARK 3 T11: 0.6802 T22: 1.5414 REMARK 3 T33: 1.4012 T12: -0.0938 REMARK 3 T13: 0.1518 T23: -0.3935 REMARK 3 L TENSOR REMARK 3 L11: 4.4453 L22: 4.6990 REMARK 3 L33: 6.9583 L12: -1.3110 REMARK 3 L13: 1.5592 L23: -1.8686 REMARK 3 S TENSOR REMARK 3 S11: 0.5169 S12: -1.5645 S13: 2.0412 REMARK 3 S21: -0.1095 S22: 0.4244 S23: 0.5031 REMARK 3 S31: -0.3916 S32: 1.0895 S33: -1.0153 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6645 18.9734 46.3286 REMARK 3 T TENSOR REMARK 3 T11: 1.0209 T22: 1.7023 REMARK 3 T33: 0.8707 T12: 0.1486 REMARK 3 T13: -0.1537 T23: -0.2332 REMARK 3 L TENSOR REMARK 3 L11: 9.8485 L22: 8.6945 REMARK 3 L33: 4.1396 L12: -4.5256 REMARK 3 L13: -1.1787 L23: -1.8503 REMARK 3 S TENSOR REMARK 3 S11: -0.9810 S12: -2.5271 S13: 0.9342 REMARK 3 S21: 1.7138 S22: 1.1255 S23: -0.5258 REMARK 3 S31: -0.4454 S32: 1.4219 S33: -0.1907 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4362 23.3925 44.7886 REMARK 3 T TENSOR REMARK 3 T11: 1.1213 T22: 2.1015 REMARK 3 T33: 1.2741 T12: -0.0397 REMARK 3 T13: -0.3158 T23: -0.5217 REMARK 3 L TENSOR REMARK 3 L11: 2.5446 L22: 8.3414 REMARK 3 L33: 7.3712 L12: 2.6429 REMARK 3 L13: -2.2911 L23: 3.0666 REMARK 3 S TENSOR REMARK 3 S11: 0.9103 S12: -2.6541 S13: -0.4858 REMARK 3 S21: 1.0907 S22: 0.2776 S23: -1.6068 REMARK 3 S31: -1.0935 S32: 0.9018 S33: -1.2341 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9858 21.1288 38.1401 REMARK 3 T TENSOR REMARK 3 T11: 0.6966 T22: 1.6186 REMARK 3 T33: 1.1079 T12: -0.2859 REMARK 3 T13: 0.1780 T23: -0.5970 REMARK 3 L TENSOR REMARK 3 L11: 5.4727 L22: 4.0210 REMARK 3 L33: 0.5610 L12: 4.2521 REMARK 3 L13: -1.1027 L23: -1.3428 REMARK 3 S TENSOR REMARK 3 S11: 1.0531 S12: -0.7036 S13: 0.9000 REMARK 3 S21: 0.6371 S22: 0.2264 S23: -0.6790 REMARK 3 S31: -0.4016 S32: 0.7443 S33: -1.0151 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24895 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 67.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZVD AND SWISS MODEL OF UBIQUITIN VARIANT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULPHATE AND 100 MM MES REMARK 280 PH 6.0. TRYPSIN WAS ADDED TO THE PROTEIN COMPLEX AT A FINAL REMARK 280 CONCENTRATION OF 10 MICROGRAM PER ML, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 100.76500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.03400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 100.76500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.03400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 362 REMARK 465 ALA A 363 REMARK 465 MET A 364 REMARK 465 ALA A 365 REMARK 465 PRO A 366 REMARK 465 ARG A 367 REMARK 465 TYR A 368 REMARK 465 CYS A 743 REMARK 465 GLY A 744 REMARK 465 PHE A 745 REMARK 465 ALA A 746 REMARK 465 VAL A 747 REMARK 465 GLU A 748 REMARK 465 MET B -23 REMARK 465 ALA B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 VAL B -15 REMARK 465 THR B -14 REMARK 465 SER B -13 REMARK 465 LEU B -12 REMARK 465 TYR B -11 REMARK 465 LYS B -10 REMARK 465 LYS B -9 REMARK 465 ALA B -8 REMARK 465 GLY B -7 REMARK 465 ASP B -6 REMARK 465 TYR B -5 REMARK 465 LYS B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 ASP B -1 REMARK 465 LYS B 0 REMARK 465 GLY B 53 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 LYS A 377 CD CE NZ REMARK 470 ARG A 380 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 389 CG CD OE1 NE2 REMARK 470 ARG A 461 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 462 CG OD1 OD2 REMARK 470 GLN A 511 CG CD OE1 NE2 REMARK 470 GLU A 523 OE1 OE2 REMARK 470 LEU A 524 CG CD1 CD2 REMARK 470 LYS A 631 CG CD CE NZ REMARK 470 LYS A 644 CG CD CE NZ REMARK 470 GLU A 665 CG CD OE1 OE2 REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 ILE B 36 CG1 CG2 CD1 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 ASP B 58 CG OD1 OD2 REMARK 470 LEU B 62 CG CD1 CD2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N CYS A 716 S4 DTT A 811 1.64 REMARK 500 O GLN A 611 O HOH A 901 1.98 REMARK 500 O HOH A 912 O HOH A 953 2.11 REMARK 500 O HOH A 939 O HOH A 948 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 624 CB - CG - CD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 433 129.44 -171.26 REMARK 500 ASP A 526 75.80 -175.48 REMARK 500 ASP A 546 42.27 -109.57 REMARK 500 ALA A 692 -80.87 -94.53 REMARK 500 ASP B 58 -42.20 -145.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 7M3Q A 366 748 UNP Q9HAU4 SMUF2_HUMAN 366 748 DBREF 7M3Q B 2 74 UNP P62987 RL40_HUMAN 2 74 SEQADV 7M3Q GLY A 362 UNP Q9HAU4 EXPRESSION TAG SEQADV 7M3Q ALA A 363 UNP Q9HAU4 EXPRESSION TAG SEQADV 7M3Q MET A 364 UNP Q9HAU4 EXPRESSION TAG SEQADV 7M3Q ALA A 365 UNP Q9HAU4 EXPRESSION TAG SEQADV 7M3Q MET B -23 UNP P62987 EXPRESSION TAG SEQADV 7M3Q ALA B -22 UNP P62987 EXPRESSION TAG SEQADV 7M3Q HIS B -21 UNP P62987 EXPRESSION TAG SEQADV 7M3Q HIS B -20 UNP P62987 EXPRESSION TAG SEQADV 7M3Q HIS B -19 UNP P62987 EXPRESSION TAG SEQADV 7M3Q HIS B -18 UNP P62987 EXPRESSION TAG SEQADV 7M3Q HIS B -17 UNP P62987 EXPRESSION TAG SEQADV 7M3Q HIS B -16 UNP P62987 EXPRESSION TAG SEQADV 7M3Q VAL B -15 UNP P62987 EXPRESSION TAG SEQADV 7M3Q THR B -14 UNP P62987 EXPRESSION TAG SEQADV 7M3Q SER B -13 UNP P62987 EXPRESSION TAG SEQADV 7M3Q LEU B -12 UNP P62987 EXPRESSION TAG SEQADV 7M3Q TYR B -11 UNP P62987 EXPRESSION TAG SEQADV 7M3Q LYS B -10 UNP P62987 EXPRESSION TAG SEQADV 7M3Q LYS B -9 UNP P62987 EXPRESSION TAG SEQADV 7M3Q ALA B -8 UNP P62987 EXPRESSION TAG SEQADV 7M3Q GLY B -7 UNP P62987 EXPRESSION TAG SEQADV 7M3Q ASP B -6 UNP P62987 EXPRESSION TAG SEQADV 7M3Q TYR B -5 UNP P62987 EXPRESSION TAG SEQADV 7M3Q LYS B -4 UNP P62987 EXPRESSION TAG SEQADV 7M3Q ASP B -3 UNP P62987 EXPRESSION TAG SEQADV 7M3Q ASP B -2 UNP P62987 EXPRESSION TAG SEQADV 7M3Q ASP B -1 UNP P62987 EXPRESSION TAG SEQADV 7M3Q LYS B 0 UNP P62987 EXPRESSION TAG SEQADV 7M3Q MET B 1 UNP P62987 INITIATING METHIONINE SEQADV 7M3Q LEU B 2 UNP P62987 GLN 2 VARIANT SEQADV 7M3Q TRP B 6 UNP P62987 LYS 6 VARIANT SEQADV 7M3Q PHE B 8 UNP P62987 LEU 8 VARIANT SEQADV 7M3Q LYS B 9 UNP P62987 THR 9 VARIANT SEQADV 7M3Q ASN B 11 UNP P62987 LYS 11 VARIANT SEQADV 7M3Q ARG B 47 UNP P62987 GLY 47 VARIANT SEQADV 7M3Q LEU B 62 UNP P62987 GLN 62 VARIANT SEQADV 7M3Q LEU B 68 UNP P62987 HIS 68 VARIANT SEQADV 7M3Q ARG B 71 UNP P62987 LEU 71 VARIANT SEQRES 1 A 387 GLY ALA MET ALA PRO ARG TYR LYS ARG ASP LEU VAL GLN SEQRES 2 A 387 LYS LEU LYS ILE LEU ARG GLN GLU LEU SER GLN GLN GLN SEQRES 3 A 387 PRO GLN ALA GLY HIS CYS ARG ILE GLU VAL SER ARG GLU SEQRES 4 A 387 GLU ILE PHE GLU GLU SER TYR ARG GLN VAL MET LYS MET SEQRES 5 A 387 ARG PRO LYS ASP LEU TRP LYS ARG LEU MET ILE LYS PHE SEQRES 6 A 387 ARG GLY GLU GLU GLY LEU ASP TYR GLY GLY VAL ALA ARG SEQRES 7 A 387 GLU TRP LEU TYR LEU LEU SER HIS GLU MET LEU ASN PRO SEQRES 8 A 387 TYR TYR GLY LEU PHE GLN TYR SER ARG ASP ASP ILE TYR SEQRES 9 A 387 THR LEU GLN ILE ASN PRO ASP SER ALA VAL ASN PRO GLU SEQRES 10 A 387 HIS LEU SER TYR PHE HIS PHE VAL GLY ARG ILE MET GLY SEQRES 11 A 387 MET ALA VAL PHE HIS GLY HIS TYR ILE ASP GLY GLY PHE SEQRES 12 A 387 THR LEU PRO PHE TYR LYS GLN LEU LEU GLY LYS SER ILE SEQRES 13 A 387 THR LEU ASP ASP MET GLU LEU VAL ASP PRO ASP LEU HIS SEQRES 14 A 387 ASN SER LEU VAL TRP ILE LEU GLU ASN ASP ILE THR GLY SEQRES 15 A 387 VAL LEU ASP HIS THR PHE CYS VAL GLU HIS ASN ALA TYR SEQRES 16 A 387 GLY GLU ILE ILE GLN HIS GLU LEU LYS PRO ASN GLY LYS SEQRES 17 A 387 SER ILE PRO VAL ASN GLU GLU ASN LYS LYS GLU TYR VAL SEQRES 18 A 387 ARG LEU TYR VAL ASN TRP ARG PHE LEU ARG GLY ILE GLU SEQRES 19 A 387 ALA GLN PHE LEU ALA LEU GLN LYS GLY PHE ASN GLU VAL SEQRES 20 A 387 ILE PRO GLN HIS LEU LEU LYS THR PHE ASP GLU LYS GLU SEQRES 21 A 387 LEU GLU LEU ILE ILE CYS GLY LEU GLY LYS ILE ASP VAL SEQRES 22 A 387 ASN ASP TRP LYS VAL ASN THR ARG LEU LYS HIS CYS THR SEQRES 23 A 387 PRO ASP SER ASN ILE VAL LYS TRP PHE TRP LYS ALA VAL SEQRES 24 A 387 GLU PHE PHE ASP GLU GLU ARG ARG ALA ARG LEU LEU GLN SEQRES 25 A 387 PHE VAL THR GLY SER SER ARG VAL PRO LEU GLN GLY PHE SEQRES 26 A 387 LYS ALA LEU GLN GLY ALA ALA GLY PRO ARG LEU PHE THR SEQRES 27 A 387 ILE HIS GLN ILE ASP ALA CYS THR ASN ASN LEU PRO LYS SEQRES 28 A 387 ALA HIS THR CYS PHE ASN ARG ILE ASP ILE PRO PRO TYR SEQRES 29 A 387 GLU SER TYR GLU LYS LEU TYR GLU LYS LEU LEU THR ALA SEQRES 30 A 387 ILE GLU GLU THR CYS GLY PHE ALA VAL GLU SEQRES 1 B 98 MET ALA HIS HIS HIS HIS HIS HIS VAL THR SER LEU TYR SEQRES 2 B 98 LYS LYS ALA GLY ASP TYR LYS ASP ASP ASP LYS MET LEU SEQRES 3 B 98 ILE PHE VAL TRP THR PHE LYS GLY ASN THR ILE THR LEU SEQRES 4 B 98 GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA SEQRES 5 B 98 LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN SEQRES 6 B 98 ARG LEU ILE PHE ALA ARG LYS GLN LEU GLU ASP GLY ARG SEQRES 7 B 98 THR LEU SER ASP TYR ASN ILE LEU LYS GLU SER THR LEU SEQRES 8 B 98 LEU LEU VAL ARG ARG LEU ARG HET SO4 A 801 5 HET SO4 A 802 5 HET NA A 803 1 HET NA A 804 1 HET CL A 805 1 HET CL A 806 1 HET CL A 807 1 HET CL A 808 1 HET CL A 809 1 HET CL A 810 1 HET DTT A 811 8 HET EDO A 812 4 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM EDO 1,2-ETHANEDIOL HETSYN DTT 1,4-DITHIOTHREITOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 NA 2(NA 1+) FORMUL 7 CL 6(CL 1-) FORMUL 13 DTT C4 H10 O2 S2 FORMUL 14 EDO C2 H6 O2 FORMUL 15 HOH *54(H2 O) HELIX 1 AA1 LYS A 369 GLN A 387 1 19 HELIX 2 AA2 GLU A 401 MET A 413 1 13 HELIX 3 AA3 ARG A 414 TRP A 419 1 6 HELIX 4 AA4 ASP A 433 ASN A 451 1 19 HELIX 5 AA5 PRO A 452 GLY A 455 5 4 HELIX 6 AA6 PRO A 471 ASN A 476 5 6 HELIX 7 AA7 GLU A 478 HIS A 496 1 19 HELIX 8 AA8 THR A 505 LEU A 513 1 9 HELIX 9 AA9 ASP A 521 ASP A 526 1 6 HELIX 10 AB1 ASP A 526 ASN A 539 1 14 HELIX 11 AB2 ASN A 567 ILE A 571 5 5 HELIX 12 AB3 ASN A 577 ARG A 592 1 16 HELIX 13 AB4 ILE A 594 ILE A 609 1 16 HELIX 14 AB5 PRO A 610 LYS A 615 5 6 HELIX 15 AB6 ASP A 618 GLY A 628 1 11 HELIX 16 AB7 ASP A 633 ASN A 640 1 8 HELIX 17 AB8 SER A 650 PHE A 663 1 14 HELIX 18 AB9 ASP A 664 GLY A 677 1 14 HELIX 19 AC1 GLY A 685 LEU A 689 5 5 HELIX 20 AC2 SER A 727 ILE A 739 1 13 HELIX 21 AC3 THR B 22 GLU B 34 1 13 HELIX 22 AC4 PRO B 37 ASP B 39 5 3 SHEET 1 AA1 2 HIS A 392 VAL A 397 0 SHEET 2 AA1 2 ARG A 421 PHE A 426 1 O ARG A 421 N CYS A 393 SHEET 1 AA2 2 PHE A 457 TYR A 459 0 SHEET 2 AA2 2 LEU A 467 ILE A 469 -1 O GLN A 468 N GLN A 458 SHEET 1 AA3 2 CYS A 550 ASN A 554 0 SHEET 2 AA3 2 ILE A 559 GLU A 563 -1 O HIS A 562 N VAL A 551 SHEET 1 AA4 4 THR A 641 LYS A 644 0 SHEET 2 AA4 4 PHE A 698 GLN A 702 1 O PHE A 698 N ARG A 642 SHEET 3 AA4 4 ARG A 719 ILE A 722 1 O ILE A 720 N HIS A 701 SHEET 4 AA4 4 LYS A 712 HIS A 714 -1 N LYS A 712 O ASP A 721 SHEET 1 AA5 4 THR B 12 GLU B 16 0 SHEET 2 AA5 4 LEU B 2 THR B 7 -1 N ILE B 3 O LEU B 15 SHEET 3 AA5 4 THR B 66 ARG B 71 1 O LEU B 67 N TRP B 6 SHEET 4 AA5 4 GLN B 41 ILE B 44 -1 N ARG B 42 O VAL B 70 LINK OE2 GLU A 396 NA NA A 803 1555 1555 2.70 LINK NA NA A 804 O HOH A 952 1555 1555 2.33 CRYST1 201.530 72.068 48.813 90.00 94.61 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004962 0.000000 0.000400 0.00000 SCALE2 0.000000 0.013876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020553 0.00000