HEADER PLANT PROTEIN 19-MAR-21 7M3U TITLE SOLUTION NMR STRUCTURE OF PAWS-DERIVED PEPTIDE PDP-24 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAWS-DERIVED PEPTIDE PDP-24; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ZINNIA HAAGEANA; SOURCE 4 ORGANISM_TAXID: 1525732 KEYWDS CYCLIC, AEP-PROCESSED, BI-DISULFIDE, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.D.PAYNE,K.J.ROSENGREN REVDAT 2 13-APR-22 7M3U 1 JRNL REVDAT 1 31-MAR-21 7M3U 0 JRNL AUTH C.D.PAYNE,G.VADLAMANI,F.HAJIAGHAALIPOUR,T.MUHAMMAD, JRNL AUTH 2 M.F.FISHER,H.S.ANDERSSON,U.GORANSSON,R.J.CLARK,C.S.BOND, JRNL AUTH 3 J.S.MYLNE,K.J.ROSENGREN JRNL TITL SOLUTION NMR AND RACEMIC CRYSTALLOGRAPHY PROVIDE INSIGHTS JRNL TITL 2 INTO A NOVEL STRUCTURAL CLASS OF CYCLIC PLANT PEPTIDES. JRNL REF RSC CHEM BIOL V. 2 1682 2021 JRNL REFN ESSN 2633-0679 JRNL PMID 34977583 JRNL DOI 10.1039/D1CB00155H REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS, CYANA REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USING TORSION ANGLE DYNAMICS REMARK 4 REMARK 4 7M3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255595. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288; 293; 298; 303; 308 REMARK 210 PH : 3.5; 3.5; 3.5; 3.5; 3.5 REMARK 210 IONIC STRENGTH : 0; 0; 0; 0; 0 REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM; 1 ATM; 1 REMARK 210 ATM REMARK 210 SAMPLE CONTENTS : 2 MG/ML PDP-24, 80% CD3CN/20% REMARK 210 H2O; 2 MG/ML PDP-24, 80% CD3CN/ REMARK 210 20% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-13C HSQC; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 HIS A 6 -0.01 74.06 REMARK 500 6 HIS A 6 -0.04 70.54 REMARK 500 8 HIS A 6 -0.10 74.15 REMARK 500 10 HIS A 6 -0.55 78.74 REMARK 500 11 HIS A 6 -0.29 72.35 REMARK 500 13 HIS A 6 -0.77 76.34 REMARK 500 15 HIS A 6 -0.02 73.50 REMARK 500 16 HIS A 6 -0.19 76.56 REMARK 500 17 HIS A 6 -0.11 76.27 REMARK 500 19 HIS A 6 -0.25 74.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30889 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF PAWS-DERIVED PEPTIDE PDP-24 DBREF 7M3U A 1 27 PDB 7M3U 7M3U 1 27 SEQRES 1 A 27 GLY PHE CYS TRP GLN HIS THR CYS LEU PRO SER GLY CYS SEQRES 2 A 27 ALA ASP PHE PRO TRP PRO VAL GLY HIS GLN CYS PHE PRO SEQRES 3 A 27 ASP SHEET 1 AA1 2 PHE A 2 TRP A 4 0 SHEET 2 AA1 2 THR A 7 LEU A 9 -1 O THR A 7 N TRP A 4 SHEET 1 AA2 2 GLY A 12 ASP A 15 0 SHEET 2 AA2 2 HIS A 22 PHE A 25 -1 O PHE A 25 N GLY A 12 SSBOND 1 CYS A 3 CYS A 8 1555 1555 2.04 SSBOND 2 CYS A 13 CYS A 24 1555 1555 2.04 LINK N GLY A 1 C ASP A 27 1555 1555 1.31 CISPEP 1 TRP A 18 PRO A 19 1 -2.72 CISPEP 2 TRP A 18 PRO A 19 2 -3.58 CISPEP 3 TRP A 18 PRO A 19 3 -2.08 CISPEP 4 TRP A 18 PRO A 19 4 -2.98 CISPEP 5 TRP A 18 PRO A 19 5 -4.30 CISPEP 6 TRP A 18 PRO A 19 6 -2.55 CISPEP 7 TRP A 18 PRO A 19 7 -2.32 CISPEP 8 TRP A 18 PRO A 19 8 -2.25 CISPEP 9 TRP A 18 PRO A 19 9 -3.08 CISPEP 10 TRP A 18 PRO A 19 10 -2.31 CISPEP 11 TRP A 18 PRO A 19 11 -3.85 CISPEP 12 TRP A 18 PRO A 19 12 -2.82 CISPEP 13 TRP A 18 PRO A 19 13 -4.34 CISPEP 14 TRP A 18 PRO A 19 14 -3.01 CISPEP 15 TRP A 18 PRO A 19 15 -3.66 CISPEP 16 TRP A 18 PRO A 19 16 -3.63 CISPEP 17 TRP A 18 PRO A 19 17 -2.99 CISPEP 18 TRP A 18 PRO A 19 18 -4.52 CISPEP 19 TRP A 18 PRO A 19 19 -2.60 CISPEP 20 TRP A 18 PRO A 19 20 -2.93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1