HEADER REPLICATION 21-MAR-21 7M45 TITLE DNA POLYMERASE LAMBDA, TTP:AT MG2+ REACTION STATE TERNARY COMPLEX, 120 TITLE 2 SEC COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 5 KAPPA; COMPND 6 EC: 2.7.7.7,4.2.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*CP*T)-3'); COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630 KEYWDS TIME-LAPSE CRYSTALLOGRAPHY, DNA POLYMERASE LAMBDA, DOUBLE STRAND KEYWDS 2 BREAK REPAIR, DNA SYNTHESIS FIDELITY, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JAMSEN,S.H.WILSON REVDAT 2 18-OCT-23 7M45 1 REMARK REVDAT 1 06-JUL-22 7M45 0 JRNL AUTH J.A.JAMSEN,D.D.SHOCK,S.H.WILSON JRNL TITL WATCHING RIGHT AND WRONG NUCLEOTIDE INSERTION CAPTURES JRNL TITL 2 HIDDEN POLYMERASE FIDELITY CHECKPOINTS. JRNL REF NAT COMMUN V. 13 3193 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35680862 JRNL DOI 10.1038/S41467-022-30141-W REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.15.2-3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 39210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.0160 - 4.5438 0.99 2907 144 0.1934 0.2172 REMARK 3 2 4.5438 - 3.6105 0.99 2761 148 0.1614 0.2164 REMARK 3 3 3.6105 - 3.1553 1.00 2759 134 0.1757 0.2012 REMARK 3 4 3.1553 - 2.8673 0.95 2589 134 0.2186 0.2274 REMARK 3 5 2.8673 - 2.6621 0.95 2592 133 0.2233 0.3096 REMARK 3 6 2.6621 - 2.5053 0.97 2640 137 0.2203 0.2510 REMARK 3 7 2.5053 - 2.3799 0.99 2694 136 0.2293 0.2583 REMARK 3 8 2.3799 - 2.2764 0.97 2629 140 0.2407 0.2599 REMARK 3 9 2.2764 - 2.1889 0.99 2680 135 0.2624 0.3283 REMARK 3 10 2.1889 - 2.1134 1.00 2722 137 0.2144 0.2550 REMARK 3 11 2.1134 - 2.0473 1.00 2672 144 0.2109 0.2356 REMARK 3 12 2.0473 - 1.9888 1.00 2682 137 0.2215 0.2728 REMARK 3 13 1.9888 - 1.9365 0.97 2586 133 0.3400 0.3666 REMARK 3 14 1.9365 - 1.8893 0.88 2391 114 0.3565 0.4344 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 251 THROUGH 325) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3239 -29.7914 24.8018 REMARK 3 T TENSOR REMARK 3 T11: 0.5222 T22: 0.7140 REMARK 3 T33: 0.5691 T12: 0.1596 REMARK 3 T13: -0.1078 T23: 0.0935 REMARK 3 L TENSOR REMARK 3 L11: 0.2145 L22: 0.3552 REMARK 3 L33: 0.2829 L12: -0.1377 REMARK 3 L13: -0.1922 L23: -0.0499 REMARK 3 S TENSOR REMARK 3 S11: -0.0970 S12: -0.5338 S13: -0.0750 REMARK 3 S21: 0.4412 S22: 0.1648 S23: -0.5872 REMARK 3 S31: 0.4943 S32: 0.7332 S33: 0.0027 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 326 THROUGH 533) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6769 -6.2359 9.1496 REMARK 3 T TENSOR REMARK 3 T11: 0.2398 T22: 0.2086 REMARK 3 T33: 0.2602 T12: 0.0261 REMARK 3 T13: -0.0193 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 2.4523 L22: 1.2129 REMARK 3 L33: 1.6065 L12: 0.1729 REMARK 3 L13: -0.8820 L23: 0.2822 REMARK 3 S TENSOR REMARK 3 S11: 0.1065 S12: -0.1467 S13: 0.2969 REMARK 3 S21: 0.0639 S22: 0.0225 S23: -0.0387 REMARK 3 S31: -0.1824 S32: 0.0599 S33: 0.0435 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 534 THROUGH 575) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4718 -4.1285 31.1371 REMARK 3 T TENSOR REMARK 3 T11: 0.4748 T22: 0.6365 REMARK 3 T33: 0.3405 T12: -0.0276 REMARK 3 T13: -0.0163 T23: -0.1443 REMARK 3 L TENSOR REMARK 3 L11: 2.4553 L22: 1.9447 REMARK 3 L33: 0.4182 L12: -0.9311 REMARK 3 L13: 0.4090 L23: 0.2717 REMARK 3 S TENSOR REMARK 3 S11: 0.1966 S12: -0.7201 S13: -0.2500 REMARK 3 S21: 0.2740 S22: 0.0355 S23: 0.0994 REMARK 3 S31: -0.1228 S32: 0.5149 S33: 0.1342 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9599 -26.0395 26.6855 REMARK 3 T TENSOR REMARK 3 T11: 0.5094 T22: 0.6944 REMARK 3 T33: 0.4445 T12: -0.0412 REMARK 3 T13: 0.0737 T23: 0.2512 REMARK 3 L TENSOR REMARK 3 L11: 0.0766 L22: 0.0105 REMARK 3 L33: 0.0141 L12: -0.0061 REMARK 3 L13: -0.0167 L23: 0.0116 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: -0.0711 S13: -0.0334 REMARK 3 S21: -0.0040 S22: 0.0447 S23: 0.1468 REMARK 3 S31: 0.0133 S32: -0.0898 S33: -0.1932 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 5 THROUGH 11) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6199 -9.2561 9.9578 REMARK 3 T TENSOR REMARK 3 T11: 0.2973 T22: 0.2422 REMARK 3 T33: 0.3186 T12: 0.0148 REMARK 3 T13: -0.0181 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.0675 L22: 0.1036 REMARK 3 L33: 0.0361 L12: -0.0105 REMARK 3 L13: -0.0231 L23: 0.0573 REMARK 3 S TENSOR REMARK 3 S11: 0.1024 S12: -0.0607 S13: 0.0898 REMARK 3 S21: 0.0858 S22: -0.0464 S23: 0.2315 REMARK 3 S31: 0.0087 S32: 0.0625 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'P' AND RESID 1 THROUGH 6) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6221 -14.2502 9.1435 REMARK 3 T TENSOR REMARK 3 T11: 0.2568 T22: 0.2353 REMARK 3 T33: 0.2212 T12: -0.0045 REMARK 3 T13: 0.0043 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 0.0249 L22: 0.0740 REMARK 3 L33: 0.0202 L12: -0.0299 REMARK 3 L13: 0.0061 L23: -0.0139 REMARK 3 S TENSOR REMARK 3 S11: 0.0987 S12: -0.2164 S13: -0.0871 REMARK 3 S21: 0.0511 S22: -0.1152 S23: -0.0548 REMARK 3 S31: -0.1461 S32: -0.1107 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4609 -28.5619 29.4293 REMARK 3 T TENSOR REMARK 3 T11: 0.5304 T22: 0.4893 REMARK 3 T33: 0.2758 T12: -0.0278 REMARK 3 T13: 0.0493 T23: 0.0877 REMARK 3 L TENSOR REMARK 3 L11: 0.7521 L22: 0.8597 REMARK 3 L33: 1.6019 L12: 0.5211 REMARK 3 L13: 0.6591 L23: 1.1714 REMARK 3 S TENSOR REMARK 3 S11: 0.4260 S12: -0.3102 S13: -0.1311 REMARK 3 S21: 0.5049 S22: 0.2847 S23: 0.0327 REMARK 3 S31: 0.0993 S32: 0.2535 S33: 0.2633 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1001310090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39892 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.889 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 3UPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80-95MM BICINE PH 8.3, 0.3M NA-K REMARK 280 TARTRATE, 18-22.5% POLYPURE PEG, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.00900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.00500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.27350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.00500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.00900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.27350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 252 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 ILE A 256 CG1 CG2 CD1 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 LYS A 259 CD CE NZ REMARK 470 GLU A 261 CD OE1 OE2 REMARK 470 LEU A 263 CD1 CD2 REMARK 470 LYS A 265 CE NZ REMARK 470 LYS A 273 CE NZ REMARK 470 LEU A 286 CD1 CD2 REMARK 470 LYS A 287 CD CE NZ REMARK 470 PHE A 289 CE1 CE2 CZ REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 VAL A 293 CG1 CG2 REMARK 470 GLN A 297 CB CG CD OE1 NE2 REMARK 470 ALA A 299 CB REMARK 470 ILE A 302 CG1 CG2 CD1 REMARK 470 LYS A 307 CD CE NZ REMARK 470 ARG A 308 NE CZ NH1 NH2 REMARK 470 ILE A 313 CG1 CG2 CD1 REMARK 470 ILE A 314 CD1 REMARK 470 ILE A 316 CG1 CG2 CD1 REMARK 470 LEU A 317 CD1 CD2 REMARK 470 GLU A 318 OE1 OE2 REMARK 470 SER A 319 OG REMARK 470 LEU A 322 CG CD1 CD2 REMARK 470 ARG A 323 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 PHE A 406 CE1 CE2 CZ REMARK 470 LEU A 411 CD1 CD2 REMARK 470 LYS A 422 NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 SER A 439 OG REMARK 470 ARG A 441 CD NE CZ NH1 NH2 REMARK 470 ILE A 443 CD1 REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 449 OD1 OD2 REMARK 470 GLN A 453 CG CD OE1 NE2 REMARK 470 GLU A 454 CG CD OE1 OE2 REMARK 470 LYS A 463 NZ REMARK 470 GLU A 470 CD OE1 OE2 REMARK 470 LYS A 521 NZ REMARK 470 THR A 534 OG1 CG2 REMARK 470 ALA A 535 CB REMARK 470 VAL A 536 CG1 CG2 REMARK 470 VAL A 537 CG1 CG2 REMARK 470 THR A 540 CB OG1 CG2 REMARK 470 HIS A 541 CB CG ND1 CD2 CE1 NE2 REMARK 470 ALA A 543 CB REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 VAL A 545 CB CG1 CG2 REMARK 470 LYS A 557 CD CE NZ REMARK 470 ARG A 568 CZ NH1 NH2 REMARK 470 GLU A 569 CD OE1 OE2 REMARK 470 GLU A 572 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 2 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 DT T 7 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DG T 11 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 408 -38.06 -39.86 REMARK 500 CYS A 415 -137.46 -108.84 REMARK 500 ARG A 438 -36.34 -140.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 O REMARK 620 2 ILE A 302 O 98.8 REMARK 620 3 ILE A 305 O 88.2 86.4 REMARK 620 4 DC D 3 OP1 165.9 94.4 87.7 REMARK 620 5 HOH D 102 O 91.9 159.7 76.7 74.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 339 O REMARK 620 2 SER A 339 O 5.9 REMARK 620 3 ILE A 341 O 100.8 95.3 REMARK 620 4 ALA A 344 O 89.6 86.9 85.3 REMARK 620 5 DA P 5 OP1 160.8 166.0 98.5 91.5 REMARK 620 6 HOH P 111 O 70.4 75.4 166.6 84.6 90.6 REMARK 620 7 HOH P 128 O 90.0 92.8 96.1 178.7 88.5 94.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 427 OD1 9.4 REMARK 620 3 ASP A 429 OD2 92.7 100.8 REMARK 620 4 PPV A 601 O21 159.6 159.6 93.1 REMARK 620 5 PPV A 601 O22 96.6 89.3 166.3 74.9 REMARK 620 6 TTP A 602 O1A 105.6 99.1 102.8 92.2 84.5 REMARK 620 7 TTP A 602 O1B 165.6 166.7 88.3 7.1 80.3 88.2 REMARK 620 8 TTP A 602 O2G 92.6 84.1 173.0 83.5 15.2 71.4 87.7 REMARK 620 9 HOH A 701 O 86.4 89.9 97.0 73.5 73.6 156.2 79.3 87.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 606 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 427 OD1 7.0 REMARK 620 3 ASP A 427 OD2 43.8 42.6 REMARK 620 4 ASP A 429 OD1 72.8 76.9 114.0 REMARK 620 5 ASP A 490 OD2 143.8 149.6 117.0 102.5 REMARK 620 6 TTP A 602 O1A 62.8 56.8 81.2 85.5 153.4 REMARK 620 7 HOH A 775 O 82.9 78.8 43.4 155.6 98.0 81.9 REMARK 620 8 HOH A 818 O 66.0 71.4 54.5 88.8 78.2 127.8 82.7 REMARK 620 9 DC P 6 O3' 145.2 139.9 142.4 98.6 70.5 83.3 100.5 148.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 607 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 811 O REMARK 620 2 HOH A 829 O 59.3 REMARK 620 3 HOH A 848 O 150.9 142.9 REMARK 620 N 1 2 DBREF 7M45 A 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 7M45 T 1 11 PDB 7M45 7M45 1 11 DBREF 7M45 P 1 7 PDB 7M45 7M45 1 7 DBREF 7M45 D 1 4 PDB 7M45 7M45 1 4 SEQADV 7M45 LYS A 463 UNP Q9UGP5 SER 463 CONFLICT SEQADV 7M45 GLY A 464 UNP Q9UGP5 GLN 464 CONFLICT SEQADV 7M45 A UNP Q9UGP5 GLU 466 DELETION SEQADV 7M45 A UNP Q9UGP5 ASN 467 DELETION SEQADV 7M45 A UNP Q9UGP5 GLY 468 DELETION SEQADV 7M45 A UNP Q9UGP5 GLN 469 DELETION SEQADV 7M45 A UNP Q9UGP5 GLN 470 DELETION SEQADV 7M45 THR A 471 UNP Q9UGP5 GLN 471 CONFLICT SEQADV 7M45 ALA A 543 UNP Q9UGP5 CYS 543 ENGINEERED MUTATION SEQRES 1 A 329 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 A 329 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 A 329 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 A 329 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 A 329 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 A 329 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 A 329 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 A 329 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 A 329 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 A 329 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 A 329 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 A 329 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 A 329 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 A 329 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 A 329 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 A 329 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 A 329 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 A 329 LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU PRO SEQRES 19 A 329 GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL SEQRES 20 A 329 VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR PHE SEQRES 21 A 329 THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA LEU SEQRES 22 A 329 ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA LEU SEQRES 23 A 329 SER THR ALA VAL VAL ARG ASN THR HIS GLY ALA LYS VAL SEQRES 24 A 329 GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS ASP SEQRES 25 A 329 VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA SEQRES 26 A 329 GLU ARG ASP TRP SEQRES 1 T 11 DC DG DG DC DA DG DT DA DC DT DG SEQRES 1 P 7 DC DA DG DT DA DC DT SEQRES 1 D 4 DG DC DC DG HET PPV A 601 9 HET TTP A 602 29 HET MG A 603 1 HET NA A 604 1 HET NA A 605 1 HET NA A 606 1 HET NA A 607 1 HET EDO A 608 4 HET SRT A 609 10 HETNAM PPV PYROPHOSPHATE HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SRT S,R MESO-TARTARIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 5 PPV H4 O7 P2 FORMUL 6 TTP C10 H17 N2 O14 P3 FORMUL 7 MG MG 2+ FORMUL 8 NA 4(NA 1+) FORMUL 12 EDO C2 H6 O2 FORMUL 13 SRT C4 H6 O6 FORMUL 14 HOH *242(H2 O) HELIX 1 AA1 ASN A 253 GLN A 270 1 18 HELIX 2 AA2 ASP A 272 PHE A 289 1 18 HELIX 3 AA3 SER A 295 CYS A 300 1 6 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 LEU A 322 ILE A 328 5 7 HELIX 6 AA6 SER A 331 ASN A 340 1 10 HELIX 7 AA7 GLY A 345 GLN A 355 1 11 HELIX 8 AA8 SER A 359 ALA A 367 1 9 HELIX 9 AA9 THR A 370 HIS A 379 1 10 HELIX 10 AB1 HIS A 379 LEU A 384 1 6 HELIX 11 AB2 ARG A 389 ASN A 407 1 19 HELIX 12 AB3 CYS A 415 ARG A 420 1 6 HELIX 13 AB4 ILE A 443 GLU A 454 1 12 HELIX 14 AB5 PRO A 495 SER A 497 5 3 HELIX 15 AB6 GLU A 498 GLY A 508 1 11 HELIX 16 AB7 SER A 509 LYS A 523 1 15 HELIX 17 AB8 THR A 555 LEU A 563 1 9 HELIX 18 AB9 GLU A 569 ASP A 574 5 6 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 ARG A 487 VAL A 493 1 O ASP A 490 N VAL A 430 SHEET 4 AA2 5 LYS A 472 CYS A 477 -1 N TYR A 473 O ILE A 491 SHEET 5 AA2 5 LEU A 457 LYS A 463 -1 N LEU A 461 O LEU A 474 SHEET 1 AA3 3 MET A 525 LEU A 527 0 SHEET 2 AA3 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 AA3 3 ARG A 549 VAL A 550 -1 O ARG A 549 N THR A 534 SHEET 1 AA4 2 VAL A 537 ARG A 538 0 SHEET 2 AA4 2 LYS A 544 GLY A 546 -1 O GLY A 546 N VAL A 537 LINK O CYS A 300 NA NA A 605 1555 1555 2.60 LINK O ILE A 302 NA NA A 605 1555 1555 2.29 LINK O ILE A 305 NA NA A 605 1555 1555 2.93 LINK O ASER A 339 NA NA A 604 1555 1555 2.45 LINK O BSER A 339 NA NA A 604 1555 1555 2.30 LINK O ILE A 341 NA NA A 604 1555 1555 2.44 LINK O ALA A 344 NA NA A 604 1555 1555 2.29 LINK OD1AASP A 427 MG MG A 603 1555 1555 2.08 LINK OD1BASP A 427 MG MG A 603 1555 1555 1.85 LINK OD1AASP A 427 NA NA A 606 1555 1555 3.16 LINK OD1BASP A 427 NA NA A 606 1555 1555 3.07 LINK OD2AASP A 427 NA NA A 606 1555 1555 2.20 LINK OD2 ASP A 429 MG MG A 603 1555 1555 1.99 LINK OD1 ASP A 429 NA NA A 606 1555 1555 2.11 LINK OD2 ASP A 490 NA NA A 606 1555 1555 2.33 LINK O21BPPV A 601 MG MG A 603 1555 1555 2.30 LINK O22BPPV A 601 MG MG A 603 1555 1555 2.38 LINK O1AATTP A 602 MG MG A 603 1555 1555 1.80 LINK O1BATTP A 602 MG MG A 603 1555 1555 1.97 LINK O2GATTP A 602 MG MG A 603 1555 1555 2.24 LINK O1AATTP A 602 NA NA A 606 1555 1555 2.73 LINK MG MG A 603 O HOH A 701 1555 1555 1.97 LINK MG MG A 603 OP1B DT P 7 1555 1555 2.18 LINK NA NA A 604 OP1 DA P 5 1555 1555 2.38 LINK NA NA A 604 O HOH P 111 1555 1555 2.62 LINK NA NA A 604 O HOH P 128 1555 1555 2.50 LINK NA NA A 605 OP1 DC D 3 1555 1555 3.15 LINK NA NA A 605 O HOH D 102 1555 1555 2.19 LINK NA NA A 606 O BHOH A 775 1555 1555 2.52 LINK NA NA A 606 O BHOH A 818 1555 1555 2.44 LINK NA NA A 606 O3'A DC P 6 1555 1555 2.63 LINK NA NA A 606 O3'B DC P 6 1555 1555 2.61 LINK NA NA A 606 OP1B DT P 7 1555 1555 2.35 LINK NA NA A 607 O BHOH A 811 1555 1555 3.05 LINK NA NA A 607 O HOH A 829 1555 1555 3.18 LINK NA NA A 607 O HOH A 848 1555 1555 3.03 CISPEP 1 GLY A 508 SER A 509 0 4.76 CRYST1 56.018 62.547 140.010 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017851 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007142 0.00000