HEADER REPLICATION 21-MAR-21 7M4B TITLE DNA POLYMERASE LAMBDA, TTP:AT MN2+ PRODUCT STATE TERNARY COMPLEX, 60 TITLE 2 MIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 5 KAPPA; COMPND 6 EC: 2.7.7.7,4.2.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*CP*T)-3'); COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630 KEYWDS TIME-LAPSE CRYSTALLOGRAPHY, DNA POLYMERASE LAMBDA, DOUBLE STRAND KEYWDS 2 BREAK REPAIR, DNA SYNTHESIS FIDELITY, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JAMSEN,S.H.WILSON REVDAT 2 18-OCT-23 7M4B 1 REMARK REVDAT 1 06-JUL-22 7M4B 0 JRNL AUTH J.A.JAMSEN,D.D.SHOCK,S.H.WILSON JRNL TITL WATCHING RIGHT AND WRONG NUCLEOTIDE INSERTION CAPTURES JRNL TITL 2 HIDDEN POLYMERASE FIDELITY CHECKPOINTS. JRNL REF NAT COMMUN V. 13 3193 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35680862 JRNL DOI 10.1038/S41467-022-30141-W REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.15.2-3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 58606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1440 - 4.5745 0.97 2823 140 0.1948 0.2101 REMARK 3 2 4.5745 - 3.6327 1.00 2751 150 0.1545 0.1771 REMARK 3 3 3.6327 - 3.1740 1.00 2736 135 0.1716 0.1849 REMARK 3 4 3.1740 - 2.8840 1.00 2700 144 0.1870 0.2084 REMARK 3 5 2.8840 - 2.6774 1.00 2684 132 0.1884 0.2157 REMARK 3 6 2.6774 - 2.5196 1.00 2682 139 0.1818 0.1983 REMARK 3 7 2.5196 - 2.3935 1.00 2686 138 0.1784 0.1984 REMARK 3 8 2.3935 - 2.2894 1.00 2672 143 0.1763 0.1835 REMARK 3 9 2.2894 - 2.2012 1.00 2682 138 0.1736 0.2122 REMARK 3 10 2.2012 - 2.1253 1.00 2664 135 0.1837 0.2042 REMARK 3 11 2.1253 - 2.0589 1.00 2646 142 0.1837 0.2141 REMARK 3 12 2.0589 - 2.0000 1.00 2635 135 0.1821 0.2371 REMARK 3 13 2.0000 - 1.9474 1.00 2660 136 0.1852 0.2175 REMARK 3 14 1.9474 - 1.8999 1.00 2644 134 0.1920 0.2346 REMARK 3 15 1.8999 - 1.8567 1.00 2655 137 0.2010 0.2400 REMARK 3 16 1.8567 - 1.8172 1.00 2635 136 0.1957 0.2732 REMARK 3 17 1.8172 - 1.7808 1.00 2636 136 0.1974 0.1881 REMARK 3 18 1.7808 - 1.7472 1.00 2617 135 0.2022 0.1982 REMARK 3 19 1.7472 - 1.7160 0.99 2640 136 0.2163 0.2457 REMARK 3 20 1.7160 - 1.6869 0.95 2478 127 0.2349 0.2076 REMARK 3 21 1.6869 - 1.6600 0.90 2408 124 0.2572 0.2752 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 251 THROUGH 575) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2551 -11.1593 15.1465 REMARK 3 T TENSOR REMARK 3 T11: 0.2385 T22: 0.2850 REMARK 3 T33: 0.2444 T12: 0.0310 REMARK 3 T13: -0.0554 T23: -0.0480 REMARK 3 L TENSOR REMARK 3 L11: 2.4844 L22: 1.2615 REMARK 3 L33: 1.5689 L12: 0.1737 REMARK 3 L13: -0.9466 L23: 0.1871 REMARK 3 S TENSOR REMARK 3 S11: 0.0620 S12: -0.4313 S13: 0.0937 REMARK 3 S21: 0.1997 S22: 0.0262 S23: -0.1274 REMARK 3 S31: -0.0295 S32: 0.1569 S33: 0.0171 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9976 -26.0007 26.8039 REMARK 3 T TENSOR REMARK 3 T11: 0.5074 T22: 0.5705 REMARK 3 T33: 0.3477 T12: 0.0000 REMARK 3 T13: 0.0699 T23: 0.1819 REMARK 3 L TENSOR REMARK 3 L11: 0.0391 L22: 0.1109 REMARK 3 L33: 0.0078 L12: -0.0480 REMARK 3 L13: -0.0141 L23: 0.0289 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: -0.0694 S13: 0.0734 REMARK 3 S21: -0.0504 S22: 0.0503 S23: 0.3272 REMARK 3 S31: 0.0401 S32: -0.1784 S33: -0.0038 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 5 THROUGH 11) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6783 -8.9195 9.7345 REMARK 3 T TENSOR REMARK 3 T11: 0.3519 T22: 0.2613 REMARK 3 T33: 0.2926 T12: 0.0098 REMARK 3 T13: -0.0217 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.0527 L22: 0.0536 REMARK 3 L33: 0.0368 L12: 0.0505 REMARK 3 L13: -0.0069 L23: 0.0275 REMARK 3 S TENSOR REMARK 3 S11: 0.0951 S12: -0.2004 S13: 0.1215 REMARK 3 S21: 0.0548 S22: -0.0258 S23: 0.2495 REMARK 3 S31: -0.2837 S32: -0.0023 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'P' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3493 -14.0742 9.7559 REMARK 3 T TENSOR REMARK 3 T11: 0.2579 T22: 0.2399 REMARK 3 T33: 0.2464 T12: 0.0051 REMARK 3 T13: -0.0160 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 0.0110 L22: 0.0439 REMARK 3 L33: 0.0162 L12: -0.0041 REMARK 3 L13: -0.0037 L23: 0.0316 REMARK 3 S TENSOR REMARK 3 S11: 0.0506 S12: -0.1927 S13: -0.0266 REMARK 3 S21: 0.0245 S22: -0.0311 S23: -0.0972 REMARK 3 S31: -0.1516 S32: -0.1621 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4898 -28.5046 29.5152 REMARK 3 T TENSOR REMARK 3 T11: 0.5857 T22: 0.5487 REMARK 3 T33: 0.3569 T12: 0.0076 REMARK 3 T13: 0.0424 T23: 0.1182 REMARK 3 L TENSOR REMARK 3 L11: 0.0572 L22: 0.2178 REMARK 3 L33: 0.1128 L12: 0.0200 REMARK 3 L13: 0.0236 L23: 0.1519 REMARK 3 S TENSOR REMARK 3 S11: 0.3142 S12: -0.1274 S13: -0.1031 REMARK 3 S21: 0.2999 S22: 0.2353 S23: 0.0281 REMARK 3 S31: 0.1447 S32: 0.0741 S33: 0.0174 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1001310096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58724 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 3UPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80-95MM BICINE PH 8.3, 0.3M NA-K REMARK 280 TARTRATE, 18-22.5% POLYPURE PEG, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.99050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.16700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.31700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.16700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.99050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.31700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 252 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 ILE A 256 CD1 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 LYS A 259 CD CE NZ REMARK 470 GLU A 261 CD OE1 OE2 REMARK 470 LYS A 265 CD CE NZ REMARK 470 LYS A 273 NZ REMARK 470 ARG A 275 NH1 NH2 REMARK 470 LYS A 287 CD CE NZ REMARK 470 PHE A 289 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 291 CE NZ REMARK 470 TYR A 296 OH REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 SER A 301 OG REMARK 470 LYS A 307 CE NZ REMARK 470 ARG A 308 CZ NH1 NH2 REMARK 470 ILE A 313 CD1 REMARK 470 ILE A 314 CD1 REMARK 470 LEU A 317 CD1 CD2 REMARK 470 GLU A 318 OE1 OE2 REMARK 470 SER A 319 OG REMARK 470 LEU A 322 CD1 CD2 REMARK 470 ARG A 323 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 324 CD CE NZ REMARK 470 LYS A 401 CD CE NZ REMARK 470 PHE A 406 CE1 CZ REMARK 470 LEU A 411 CD1 CD2 REMARK 470 LYS A 422 NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 SER A 439 OG REMARK 470 ARG A 441 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 443 CD1 REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 449 OD1 OD2 REMARK 470 GLN A 453 CG CD OE1 NE2 REMARK 470 LYS A 463 NZ REMARK 470 GLU A 470 CD OE1 OE2 REMARK 470 THR A 540 OG1 CG2 REMARK 470 HIS A 541 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 VAL A 545 CG1 CG2 REMARK 470 LYS A 557 CG CD CE NZ REMARK 470 ARG A 568 NH1 NH2 REMARK 470 GLU A 569 OE1 OE2 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA P 2 O3' DA P 2 C3' -0.058 REMARK 500 DG D 1 P DG D 1 OP3 -0.125 REMARK 500 DC D 3 O3' DC D 3 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 2 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT P 7 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 415 -136.20 -106.74 REMARK 500 ARG A 438 -36.65 -135.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH P 230 DISTANCE = 6.26 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EDO A 612 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 O REMARK 620 2 ILE A 302 O 87.6 REMARK 620 3 ILE A 305 O 89.5 90.6 REMARK 620 4 HOH A 712 O 83.9 148.7 59.3 REMARK 620 5 DC D 3 OP1 173.7 98.6 89.4 90.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 339 O REMARK 620 2 SER A 339 O 7.5 REMARK 620 3 ILE A 341 O 101.9 94.7 REMARK 620 4 ALA A 344 O 87.7 85.0 85.5 REMARK 620 5 HOH A 796 O 87.9 91.5 101.7 172.2 REMARK 620 6 DA P 5 OP1 159.7 166.7 98.4 93.3 88.5 REMARK 620 7 HOH P 204 O 70.5 77.2 167.6 84.4 88.0 89.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 382 OD2 REMARK 620 2 HIS A 486 ND1 103.1 REMARK 620 3 HOH A 772 O 82.3 93.5 REMARK 620 4 HOH A 804 O 117.8 88.6 158.8 REMARK 620 5 HOH A 847 O 152.1 93.8 74.6 84.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 427 OD1 6.6 REMARK 620 3 ASP A 429 OD2 94.8 88.6 REMARK 620 4 PPV A 607 O21 161.6 164.5 90.5 REMARK 620 5 PPV A 607 O12 94.5 98.7 109.5 67.1 REMARK 620 6 PPV A 607 O22 86.4 92.9 171.6 85.9 62.1 REMARK 620 7 PPV A 607 O22 86.4 92.9 171.5 85.8 62.0 0.1 REMARK 620 8 HOH A 732 O 79.5 80.8 81.9 83.8 32.8 90.2 90.1 REMARK 620 9 DT P 7 OP1 93.4 91.4 92.3 104.0 156.0 95.9 96.0 170.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD2 REMARK 620 2 ASP A 429 OD1 97.8 REMARK 620 3 ASP A 490 OD2 103.3 101.1 REMARK 620 4 HOH A 720 O 74.0 163.7 94.5 REMARK 620 5 HOH A 831 O 28.0 90.1 78.6 88.7 REMARK 620 6 DC P 6 O3' 154.2 104.3 85.4 81.2 160.3 REMARK 620 7 DT P 7 OP1 112.0 87.0 142.3 83.2 138.7 57.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 606 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 726 O REMARK 620 2 HOH A 809 O 129.4 REMARK 620 3 HOH A 809 O 109.1 43.6 REMARK 620 4 HOH A 835 O 55.0 170.3 146.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN P 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PPV A 607 O31 REMARK 620 2 HOH A 799 O 83.5 REMARK 620 3 DT P 7 OP2 85.9 106.3 REMARK 620 N 1 2 DBREF 7M4B A 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 7M4B T 1 11 PDB 7M4B 7M4B 1 11 DBREF 7M4B P 1 7 PDB 7M4B 7M4B 1 7 DBREF 7M4B D 1 4 PDB 7M4B 7M4B 1 4 SEQADV 7M4B LYS A 463 UNP Q9UGP5 SER 463 CONFLICT SEQADV 7M4B GLY A 464 UNP Q9UGP5 GLN 464 CONFLICT SEQADV 7M4B A UNP Q9UGP5 GLU 466 DELETION SEQADV 7M4B A UNP Q9UGP5 ASN 467 DELETION SEQADV 7M4B A UNP Q9UGP5 GLY 468 DELETION SEQADV 7M4B A UNP Q9UGP5 GLN 469 DELETION SEQADV 7M4B A UNP Q9UGP5 GLN 470 DELETION SEQADV 7M4B THR A 471 UNP Q9UGP5 GLN 471 CONFLICT SEQADV 7M4B ALA A 543 UNP Q9UGP5 CYS 543 ENGINEERED MUTATION SEQRES 1 A 329 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 A 329 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 A 329 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 A 329 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 A 329 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 A 329 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 A 329 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 A 329 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 A 329 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 A 329 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 A 329 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 A 329 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 A 329 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 A 329 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 A 329 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 A 329 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 A 329 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 A 329 LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU PRO SEQRES 19 A 329 GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL SEQRES 20 A 329 VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR PHE SEQRES 21 A 329 THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA LEU SEQRES 22 A 329 ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA LEU SEQRES 23 A 329 SER THR ALA VAL VAL ARG ASN THR HIS GLY ALA LYS VAL SEQRES 24 A 329 GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS ASP SEQRES 25 A 329 VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA SEQRES 26 A 329 GLU ARG ASP TRP SEQRES 1 T 11 DC DG DG DC DA DG DT DA DC DT DG SEQRES 1 P 7 DC DA DG DT DA DC DT SEQRES 1 D 4 DG DC DC DG HET MN A 601 1 HET MN A 602 1 HET MN A 603 1 HET NA A 604 1 HET NA A 605 1 HET NA A 606 1 HET PPV A 607 13 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET EDO A 611 4 HET EDO A 612 3 HET MN P 101 1 HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM PPV PYROPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 MN 4(MN 2+) FORMUL 8 NA 3(NA 1+) FORMUL 11 PPV H4 O7 P2 FORMUL 12 EDO 5(C2 H6 O2) FORMUL 18 HOH *256(H2 O) HELIX 1 AA1 ASN A 253 GLN A 270 1 18 HELIX 2 AA2 ASP A 272 SER A 288 1 17 HELIX 3 AA3 SER A 295 SER A 301 1 7 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 LEU A 322 ILE A 328 5 7 HELIX 6 AA6 SER A 331 ASN A 340 1 10 HELIX 7 AA7 GLY A 345 GLN A 355 1 11 HELIX 8 AA8 SER A 359 ALA A 367 1 9 HELIX 9 AA9 THR A 370 HIS A 379 1 10 HELIX 10 AB1 HIS A 379 LEU A 384 1 6 HELIX 11 AB2 ARG A 389 ASN A 407 1 19 HELIX 12 AB3 CYS A 415 ARG A 420 1 6 HELIX 13 AB4 ILE A 443 GLU A 454 1 12 HELIX 14 AB5 PRO A 495 SER A 497 5 3 HELIX 15 AB6 GLU A 498 GLY A 508 1 11 HELIX 16 AB7 SER A 509 LYS A 523 1 15 HELIX 17 AB8 THR A 555 LEU A 563 1 9 HELIX 18 AB9 GLU A 569 ASP A 574 5 6 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 ARG A 487 VAL A 493 1 O ASP A 490 N VAL A 430 SHEET 4 AA2 5 LYS A 472 CYS A 477 -1 N CYS A 477 O ARG A 487 SHEET 5 AA2 5 LEU A 457 LYS A 463 -1 N THR A 458 O VAL A 476 SHEET 1 AA3 3 MET A 525 LEU A 527 0 SHEET 2 AA3 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 AA3 3 ARG A 549 LEU A 551 -1 O LEU A 551 N LEU A 532 SHEET 1 AA4 2 VAL A 537 ARG A 538 0 SHEET 2 AA4 2 LYS A 544 GLY A 546 -1 O VAL A 545 N VAL A 537 LINK O CYS A 300 NA NA A 605 1555 1555 2.79 LINK O ILE A 302 NA NA A 605 1555 1555 2.17 LINK O ILE A 305 NA NA A 605 1555 1555 2.93 LINK O ASER A 339 NA NA A 604 1555 1555 2.49 LINK O BSER A 339 NA NA A 604 1555 1555 2.27 LINK O ILE A 341 NA NA A 604 1555 1555 2.45 LINK O ALA A 344 NA NA A 604 1555 1555 2.37 LINK OD2 ASP A 382 MN MN A 603 1555 1555 2.12 LINK OD1AASP A 427 MN MN A 601 1555 1555 2.16 LINK OD1BASP A 427 MN MN A 601 1555 1555 2.10 LINK OD2AASP A 427 MN MN A 602 1555 1555 1.95 LINK OD2 ASP A 429 MN MN A 601 1555 1555 2.13 LINK OD1 ASP A 429 MN MN A 602 1555 1555 2.13 LINK ND1 HIS A 486 MN MN A 603 1555 1555 2.35 LINK OD2 ASP A 490 MN MN A 602 1555 1555 2.12 LINK MN MN A 601 O21 PPV A 607 1555 1555 2.08 LINK MN MN A 601 O12BPPV A 607 1555 1555 2.16 LINK MN MN A 601 O22APPV A 607 1555 1555 2.12 LINK MN MN A 601 O22BPPV A 607 1555 1555 2.63 LINK MN MN A 601 O AHOH A 732 1555 1555 2.40 LINK MN MN A 601 OP1 DT P 7 1555 1555 2.15 LINK MN MN A 602 O HOH A 720 1555 1555 2.36 LINK MN MN A 602 O BHOH A 831 1555 1555 2.59 LINK MN MN A 602 O3' DC P 6 1555 1555 2.80 LINK MN MN A 602 OP1 DT P 7 1555 1555 2.23 LINK MN MN A 603 O HOH A 772 1555 1555 2.49 LINK MN MN A 603 O HOH A 804 1555 1555 2.71 LINK MN MN A 603 O HOH A 847 1555 1555 2.41 LINK NA NA A 604 O HOH A 796 1555 1555 2.35 LINK NA NA A 604 OP1 DA P 5 1555 1555 2.38 LINK NA NA A 604 O HOH P 204 1555 1555 2.71 LINK NA NA A 605 O HOH A 712 1555 1555 2.07 LINK NA NA A 605 OP1 DC D 3 1555 1555 2.97 LINK NA NA A 606 O HOH A 726 1555 1555 3.12 LINK NA NA A 606 O BHOH A 809 1555 1555 2.86 LINK NA NA A 606 O AHOH A 809 1555 1555 2.97 LINK NA NA A 606 O HOH A 835 1555 4445 3.16 LINK O31 PPV A 607 MN B MN P 101 1555 1555 2.12 LINK O BHOH A 799 MN B MN P 101 1555 1555 2.16 LINK OP2 DT P 7 MN B MN P 101 1555 1555 2.28 CISPEP 1 GLY A 508 SER A 509 0 0.22 CRYST1 55.981 62.634 140.334 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017863 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007126 0.00000