HEADER ANTIVIRAL PROTEIN, IMMUNE SYSTEM 22-MAR-21 7M52 TITLE B6 FAB FRAGMENT BOUND TO THE HKU4 SPIKE STEM HELIX PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE GLYCOPROTEIN STEM HELIX PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1231-1245 OF THE SPIKE GLYCOPROTEIN; COMPND 5 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: B6 ANTIGEN-BINDING (FAB) FRAGMENT HEAVY CHAIN; COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: B6 ANTIGEN-BINDING (FAB) FRAGMENT LIGHT CHAIN; COMPND 13 CHAIN: L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: BAT CORONAVIRUS HKU4; SOURCE 4 ORGANISM_COMMON: BTCOV, BTCOV/HKU4/2004; SOURCE 5 ORGANISM_TAXID: 694007; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS BROADLY NEUTRALIZING ANTIBODY, STRUCTURAL GENOMICS, SSGCID, CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, ANTIVIRAL KEYWDS 3 PROTEIN, IMMUNE SYSTEM, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 4 INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.SAUER,Y.J.PARK,D.VEESLER,SEATTLE STRUCTURAL GENOMICS CENTER FOR AUTHOR 2 INFECTIOUS DISEASE (SSGCID) REVDAT 4 18-OCT-23 7M52 1 REMARK REVDAT 3 30-JUN-21 7M52 1 KEYWDS AUTHOR REVDAT 2 23-JUN-21 7M52 1 JRNL REVDAT 1 26-MAY-21 7M52 0 JRNL AUTH M.M.SAUER,M.A.TORTORICI,Y.J.PARK,A.C.WALLS,L.HOMAD, JRNL AUTH 2 O.J.ACTON,J.E.BOWEN,C.WANG,X.XIONG,W.DE VAN DER SCHUEREN, JRNL AUTH 3 J.QUISPE,B.G.HOFFSTROM,B.J.BOSCH,A.T.MCGUIRE,D.VEESLER JRNL TITL STRUCTURAL BASIS FOR BROAD CORONAVIRUS NEUTRALIZATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 28 478 2021 JRNL REFN ESSN 1545-9985 JRNL PMID 33981021 JRNL DOI 10.1038/S41594-021-00596-4 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 69052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 3574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6900 - 4.4400 0.99 2657 166 0.1450 0.1673 REMARK 3 2 4.4400 - 3.5300 0.99 2573 159 0.1273 0.1632 REMARK 3 3 3.5300 - 3.0800 0.99 2589 148 0.1484 0.1807 REMARK 3 4 3.0800 - 2.8000 0.98 2568 142 0.1655 0.1863 REMARK 3 5 2.8000 - 2.6000 0.98 2585 136 0.1671 0.2054 REMARK 3 6 2.6000 - 2.4500 0.99 2536 149 0.1669 0.2263 REMARK 3 7 2.4500 - 2.3200 0.98 2540 135 0.1658 0.2254 REMARK 3 8 2.3200 - 2.2200 0.97 2549 124 0.1699 0.1901 REMARK 3 9 2.2200 - 2.1400 0.98 2562 122 0.1608 0.1929 REMARK 3 10 2.1400 - 2.0600 0.97 2530 144 0.1573 0.2153 REMARK 3 11 2.0600 - 2.0000 0.97 2515 138 0.1621 0.1873 REMARK 3 12 2.0000 - 1.9400 0.97 2571 130 0.1535 0.1693 REMARK 3 13 1.9400 - 1.8900 0.97 2452 157 0.1589 0.2109 REMARK 3 14 1.8900 - 1.8400 0.97 2529 136 0.1628 0.2047 REMARK 3 15 1.8400 - 1.8000 0.96 2483 145 0.1819 0.2013 REMARK 3 16 1.8000 - 1.7600 0.96 2497 157 0.1862 0.2327 REMARK 3 17 1.7600 - 1.7300 0.97 2481 131 0.2030 0.2390 REMARK 3 18 1.7300 - 1.7000 0.96 2486 123 0.2150 0.2683 REMARK 3 19 1.7000 - 1.6700 0.96 2526 107 0.2223 0.2614 REMARK 3 20 1.6700 - 1.6400 0.97 2497 117 0.2120 0.2471 REMARK 3 21 1.6400 - 1.6100 0.95 2485 132 0.2165 0.2336 REMARK 3 22 1.6100 - 1.5900 0.96 2486 118 0.2241 0.2195 REMARK 3 23 1.5900 - 1.5600 0.95 2437 144 0.2282 0.3012 REMARK 3 24 1.5600 - 1.5400 0.95 2486 133 0.2444 0.2650 REMARK 3 25 1.5400 - 1.5200 0.95 2433 151 0.2636 0.2861 REMARK 3 26 1.5200 - 1.5000 0.93 2425 130 0.2618 0.2755 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3752 REMARK 3 ANGLE : 1.502 5178 REMARK 3 CHIRALITY : 0.089 598 REMARK 3 PLANARITY : 0.014 665 REMARK 3 DIHEDRAL : 14.201 1399 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1231 THROUGH 1241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5627 11.1605 42.4064 REMARK 3 T TENSOR REMARK 3 T11: 0.4437 T22: 1.1182 REMARK 3 T33: 0.0999 T12: 0.3875 REMARK 3 T13: 0.1163 T23: -0.1318 REMARK 3 L TENSOR REMARK 3 L11: 1.4284 L22: 1.0761 REMARK 3 L33: 4.6892 L12: -0.1159 REMARK 3 L13: -2.0641 L23: 0.5163 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: -0.4160 S13: 0.1908 REMARK 3 S21: 0.3240 S22: 0.0610 S23: 0.0074 REMARK 3 S31: -0.2747 S32: -0.0071 S33: -0.2215 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 3 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8965 6.2404 24.4613 REMARK 3 T TENSOR REMARK 3 T11: 0.1528 T22: 0.3547 REMARK 3 T33: 0.2207 T12: 0.0223 REMARK 3 T13: 0.0422 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 1.7526 L22: 0.7542 REMARK 3 L33: 2.7049 L12: -0.4547 REMARK 3 L13: 0.1897 L23: -0.0392 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: -0.6141 S13: -0.2022 REMARK 3 S21: 0.1355 S22: 0.1799 S23: 0.2912 REMARK 3 S31: -0.0016 S32: -0.6057 S33: -0.0548 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 122 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5367 -3.1394 -3.0989 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.0870 REMARK 3 T33: 0.1397 T12: 0.0020 REMARK 3 T13: -0.0163 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.2762 L22: 5.4103 REMARK 3 L33: 1.2498 L12: -1.7259 REMARK 3 L13: -0.3846 L23: 1.4811 REMARK 3 S TENSOR REMARK 3 S11: 0.0643 S12: 0.1059 S13: 0.0219 REMARK 3 S21: -0.1477 S22: -0.1239 S23: -0.0561 REMARK 3 S31: -0.0552 S32: -0.1455 S33: 0.0623 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 3 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2123 4.6574 29.4030 REMARK 3 T TENSOR REMARK 3 T11: 0.1492 T22: 0.2113 REMARK 3 T33: 0.1235 T12: 0.0242 REMARK 3 T13: -0.0117 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.7879 L22: 0.9927 REMARK 3 L33: 4.7708 L12: -0.4130 REMARK 3 L13: -0.8055 L23: 0.4229 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: -0.4526 S13: 0.0387 REMARK 3 S21: 0.1834 S22: 0.1410 S23: -0.0613 REMARK 3 S31: -0.0649 S32: 0.0167 S33: 0.0067 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 116 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4391 4.0261 -9.1534 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.0915 REMARK 3 T33: 0.1180 T12: 0.0264 REMARK 3 T13: -0.0029 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 2.3504 L22: 0.6528 REMARK 3 L33: 3.2759 L12: -0.8496 REMARK 3 L13: 1.5158 L23: -0.8713 REMARK 3 S TENSOR REMARK 3 S11: 0.1500 S12: 0.3282 S13: -0.0157 REMARK 3 S21: -0.1301 S22: -0.0981 S23: 0.0078 REMARK 3 S31: 0.0548 S32: 0.1277 S33: -0.0482 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000253351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977410 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80866 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 46.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 1.40800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6NB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M SODIUM CHLORIDE, 0.1 M MES-NAOH, REMARK 280 AND 20% (W/V) PEG 4000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.79500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.79500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 590 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1242 REMARK 465 VAL A 1243 REMARK 465 THR A 1244 REMARK 465 SER A 1245 REMARK 465 CYS L 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1233 CG CD CE NZ REMARK 470 GLU A1238 CG CD OE1 OE2 REMARK 470 LYS A1241 CG CD CE NZ REMARK 470 GLN H 7 CG CD OE1 NE2 REMARK 470 LYS H 67 CG CD CE NZ REMARK 470 LYS H 137 CG CD CE NZ REMARK 470 SER H 140 OG REMARK 470 LYS H 214 CG CD CE NZ REMARK 470 LYS L 133 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL L 302 O HOH L 401 1.99 REMARK 500 O HOH L 425 O HOH L 638 2.02 REMARK 500 O HOH L 545 O HOH L 625 2.11 REMARK 500 O HOH L 574 O HOH L 640 2.12 REMARK 500 O ALA H 133 O HOH H 401 2.13 REMARK 500 O HOH H 442 O HOH H 498 2.15 REMARK 500 OE2 GLU L 168 O1 GOL L 302 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 98 CA - CB - SG ANGL. DEV. = 12.1 DEGREES REMARK 500 CYS H 204 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 MET L 23 CG - SD - CE ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS H 45 -101.36 -141.98 REMARK 500 SER H 46 126.80 -7.37 REMARK 500 ASP H 152 65.49 72.22 REMARK 500 ALA L 59 -33.02 67.93 REMARK 500 ALA L 92 166.32 178.18 REMARK 500 SER L 101 -164.77 -115.90 REMARK 500 SER L 101 -161.60 -119.59 REMARK 500 LYS L 197 -61.20 -102.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG L 218 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR H 89 12.09 REMARK 500 THR H 89 11.62 REMARK 500 REMARK 500 REMARK: NULL DBREF 7M52 A 1231 1245 UNP A3EX94 SPIKE_BCHK4 1231 1245 DBREF 7M52 H 3 222 PDB 7M52 7M52 3 222 DBREF 7M52 L 3 221 PDB 7M52 7M52 3 221 SEQRES 1 A 15 ASP PHE LYS ASP GLU LEU GLU GLU PHE PHE LYS ASN VAL SEQRES 2 A 15 THR SER SEQRES 1 H 220 GLU VAL GLN LEU GLN GLN SER GLY PRO VAL LEU VAL LYS SEQRES 2 H 220 PRO GLY ALA SER VAL ARG MET SER CYS LYS ALA SER GLY SEQRES 3 H 220 TYR THR ILE THR ASP TYR TYR LEU ASN TRP VAL LYS GLN SEQRES 4 H 220 SER HIS GLY LYS SER LEU GLU TRP LEU GLY VAL LEU ASN SEQRES 5 H 220 PRO TYR SER GLY GLY SER LEU TYR SER GLN THR PHE LYS SEQRES 6 H 220 GLY LYS ALA THR LEU THR VAL ASP ARG SER SER SER THR SEQRES 7 H 220 ALA TYR LEU GLU LEU ASN SER LEU THR SER GLU ASP SER SEQRES 8 H 220 ALA VAL TYR TYR CYS ALA ARG GLN LEU GLY ARG GLY ASN SEQRES 9 H 220 GLY LEU ASP TYR TRP GLY GLN GLY THR SER VAL THR VAL SEQRES 10 H 220 SER SER VAL SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 220 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 220 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 220 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 220 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 220 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 220 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 220 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SEQRES 1 L 219 ASN ILE MET MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 L 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 L 219 GLN SER VAL LEU HIS SER SER ASP GLN LYS ASN TYR LEU SEQRES 4 L 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 L 219 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 219 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 L 219 TYR PHE CYS HIS GLN TYR LEU SER SER TYR THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET GOL H 301 12 HET GOL L 301 6 HET GOL L 302 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *518(H2 O) HELIX 1 AA1 ASP A 1231 PHE A 1240 1 10 HELIX 2 AA2 THR H 30 TYR H 34 5 5 HELIX 3 AA3 ARG H 76 SER H 78 5 3 HELIX 4 AA4 THR H 89 SER H 93 5 5 HELIX 5 AA5 SER H 164 ALA H 166 5 3 HELIX 6 AA6 SER H 195 LEU H 197 5 3 HELIX 7 AA7 LYS H 209 ASN H 212 5 4 HELIX 8 AA8 GLN L 87 LEU L 91 5 5 HELIX 9 AA9 SER L 128 SER L 134 1 7 HELIX 10 AB1 LYS L 190 GLU L 194 1 5 SHEET 1 AA1 4 GLN H 5 GLN H 8 0 SHEET 2 AA1 4 VAL H 20 SER H 27 -1 O LYS H 25 N GLN H 7 SHEET 3 AA1 4 THR H 80 LEU H 85 -1 O ALA H 81 N CYS H 24 SHEET 4 AA1 4 ALA H 70 ASP H 75 -1 N ASP H 75 O THR H 80 SHEET 1 AA2 6 VAL H 12 VAL H 14 0 SHEET 2 AA2 6 THR H 115 VAL H 119 1 O THR H 118 N VAL H 14 SHEET 3 AA2 6 ALA H 94 GLN H 101 -1 N ALA H 94 O VAL H 117 SHEET 4 AA2 6 TYR H 35 HIS H 43 -1 N ASN H 37 O ALA H 99 SHEET 5 AA2 6 SER H 46 LEU H 53 -1 O GLU H 48 N LYS H 40 SHEET 6 AA2 6 SER H 60 TYR H 62 -1 O LEU H 61 N VAL H 52 SHEET 1 AA3 4 VAL H 12 VAL H 14 0 SHEET 2 AA3 4 THR H 115 VAL H 119 1 O THR H 118 N VAL H 14 SHEET 3 AA3 4 ALA H 94 GLN H 101 -1 N ALA H 94 O VAL H 117 SHEET 4 AA3 4 TYR H 110 TRP H 111 -1 O TYR H 110 N ARG H 100 SHEET 1 AA4 4 SER H 128 LEU H 132 0 SHEET 2 AA4 4 THR H 143 TYR H 153 -1 O LEU H 149 N PHE H 130 SHEET 3 AA4 4 TYR H 184 PRO H 193 -1 O TYR H 184 N TYR H 153 SHEET 4 AA4 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 AA5 4 THR H 139 SER H 140 0 SHEET 2 AA5 4 THR H 143 TYR H 153 -1 O THR H 143 N SER H 140 SHEET 3 AA5 4 TYR H 184 PRO H 193 -1 O TYR H 184 N TYR H 153 SHEET 4 AA5 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 AA6 3 THR H 159 TRP H 162 0 SHEET 2 AA6 3 ILE H 203 HIS H 208 -1 O ASN H 205 N SER H 161 SHEET 3 AA6 3 THR H 213 ARG H 218 -1 O VAL H 215 N VAL H 206 SHEET 1 AA7 4 MET L 6 SER L 9 0 SHEET 2 AA7 4 VAL L 21 SER L 27 -1 O SER L 24 N SER L 9 SHEET 3 AA7 4 ASP L 78 ILE L 83 -1 O PHE L 79 N CYS L 25 SHEET 4 AA7 4 PHE L 70 SER L 75 -1 N THR L 71 O THR L 82 SHEET 1 AA8 6 SER L 12 SER L 16 0 SHEET 2 AA8 6 THR L 109 LYS L 114 1 O GLU L 112 N LEU L 13 SHEET 3 AA8 6 ALA L 92 GLN L 98 -1 N ALA L 92 O LEU L 111 SHEET 4 AA8 6 LEU L 41 GLN L 46 -1 N ALA L 42 O HIS L 97 SHEET 5 AA8 6 LYS L 53 TYR L 57 -1 O LEU L 55 N TRP L 43 SHEET 6 AA8 6 THR L 61 ARG L 62 -1 O THR L 61 N TYR L 57 SHEET 1 AA9 4 SER L 12 SER L 16 0 SHEET 2 AA9 4 THR L 109 LYS L 114 1 O GLU L 112 N LEU L 13 SHEET 3 AA9 4 ALA L 92 GLN L 98 -1 N ALA L 92 O LEU L 111 SHEET 4 AA9 4 THR L 104 PHE L 105 -1 O THR L 104 N GLN L 98 SHEET 1 AB1 2 LEU L 32 HIS L 33 0 SHEET 2 AB1 2 LYS L 38 ASN L 39 -1 O LYS L 38 N HIS L 33 SHEET 1 AB2 4 SER L 121 PHE L 125 0 SHEET 2 AB2 4 THR L 136 PHE L 146 -1 O ASN L 144 N SER L 121 SHEET 3 AB2 4 TYR L 180 SER L 189 -1 O LEU L 182 N LEU L 143 SHEET 4 AB2 4 SER L 166 VAL L 170 -1 N GLN L 167 O THR L 185 SHEET 1 AB3 4 ALA L 160 LEU L 161 0 SHEET 2 AB3 4 LYS L 152 VAL L 157 -1 N VAL L 157 O ALA L 160 SHEET 3 AB3 4 VAL L 198 THR L 204 -1 O GLU L 202 N GLN L 154 SHEET 4 AB3 4 VAL L 212 ASN L 217 -1 O VAL L 212 N VAL L 203 SSBOND 1 CYS H 24 CYS H 98 1555 1555 2.04 SSBOND 2 CYS H 148 CYS H 204 1555 1555 2.05 SSBOND 3 CYS L 25 CYS L 96 1555 1555 2.15 SSBOND 4 CYS L 141 CYS L 201 1555 1555 2.05 CISPEP 1 PHE H 154 PRO H 155 0 -3.03 CISPEP 2 GLU H 156 PRO H 157 0 1.34 CISPEP 3 SER L 9 PRO L 10 0 -8.53 CISPEP 4 SER L 9 PRO L 10 0 -10.68 CISPEP 5 TYR L 147 PRO L 148 0 0.42 CRYST1 93.590 60.600 79.765 90.00 93.80 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010685 0.000000 0.000710 0.00000 SCALE2 0.000000 0.016502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012564 0.00000