HEADER TOXIN 23-MAR-21 7M5F TITLE CONTACT-DEPENDENT INHIBITION SYSTEM FROM SERRATIA MARCESCENS BWH57 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CDII; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TOXIN CDIA; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 STRAIN: BWH57; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG89; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 11 ORGANISM_TAXID: 615; SOURCE 12 STRAIN: BWH57; SOURCE 13 GENE: SK68_03206; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS TOXIN, ANTITOXIN, CDI TOXIN-IMMUNITY PROTEIN COMPLEXES, STRUCTURAL KEYWDS 2 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 3 CSGID EXPDTA X-RAY DIFFRACTION AUTHOR K.MICHALSKA,W.NUTT,L.STOLS,R.JEDRZEJCZAK,C.S.HAYES,A.JOACHIMIAK, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 23-OCT-24 7M5F 1 REMARK REVDAT 2 18-AUG-21 7M5F 1 TITLE AUTHOR JRNL REVDAT 1 12-MAY-21 7M5F 0 JRNL AUTH K.MICHALSKA,W.NUTT,L.STOLS,R.JEDRZEJCZAK,C.S.HAYES, JRNL AUTH 2 A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CONTACT-DEPENDENT INHIBITION SYSTEM FROM SERRATIA MARCESCENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3409 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 35691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6400 - 3.7400 0.98 2778 144 0.1439 0.1719 REMARK 3 2 3.7400 - 2.9700 0.99 2709 117 0.1266 0.1472 REMARK 3 3 2.9700 - 2.5900 0.99 2609 154 0.1353 0.1426 REMARK 3 4 2.5900 - 2.3600 0.99 2618 139 0.1266 0.1644 REMARK 3 5 2.3600 - 2.1900 1.00 2636 147 0.1290 0.1707 REMARK 3 6 2.1900 - 2.0600 0.98 2582 135 0.1342 0.1646 REMARK 3 7 2.0600 - 1.9600 0.99 2590 122 0.1431 0.1673 REMARK 3 8 1.9600 - 1.8700 0.99 2615 130 0.1451 0.1690 REMARK 3 9 1.8700 - 1.8000 0.99 2562 134 0.1516 0.1730 REMARK 3 10 1.8000 - 1.7400 0.99 2581 113 0.1598 0.1869 REMARK 3 11 1.7400 - 1.6800 0.99 2571 150 0.1621 0.1788 REMARK 3 12 1.6800 - 1.6300 0.98 2556 124 0.1703 0.2271 REMARK 3 13 1.6300 - 1.5900 0.98 2521 154 0.1910 0.2027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.119 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.878 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1850 REMARK 3 ANGLE : 0.909 2503 REMARK 3 CHIRALITY : 0.059 266 REMARK 3 PLANARITY : 0.007 334 REMARK 3 DIHEDRAL : 12.406 1108 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.8966 41.4678 48.6816 REMARK 3 T TENSOR REMARK 3 T11: 0.0878 T22: 0.0596 REMARK 3 T33: 0.1215 T12: 0.0060 REMARK 3 T13: -0.0155 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.2104 L22: 2.2757 REMARK 3 L33: 2.4374 L12: 0.3572 REMARK 3 L13: -0.3096 L23: 0.9349 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.0129 S13: 0.2231 REMARK 3 S21: -0.0717 S22: -0.0250 S23: -0.0969 REMARK 3 S31: -0.2156 S32: -0.0117 S33: 0.0279 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6277 21.1087 51.7493 REMARK 3 T TENSOR REMARK 3 T11: 0.2092 T22: 0.1314 REMARK 3 T33: 0.1402 T12: 0.0635 REMARK 3 T13: -0.0460 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 4.5679 L22: 4.4763 REMARK 3 L33: 5.1943 L12: -0.1499 REMARK 3 L13: -3.0840 L23: 0.4680 REMARK 3 S TENSOR REMARK 3 S11: -0.1956 S12: -0.2411 S13: -0.1447 REMARK 3 S21: 0.2077 S22: 0.3150 S23: -0.1658 REMARK 3 S31: 0.6411 S32: 0.4473 S33: -0.1094 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4929 38.3292 54.9747 REMARK 3 T TENSOR REMARK 3 T11: 0.0579 T22: 0.0749 REMARK 3 T33: 0.0848 T12: -0.0053 REMARK 3 T13: 0.0085 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.3984 L22: 5.8755 REMARK 3 L33: 1.9616 L12: -0.6847 REMARK 3 L13: 0.3475 L23: -1.2616 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.0667 S13: 0.0606 REMARK 3 S21: 0.2415 S22: 0.0088 S23: 0.0161 REMARK 3 S31: -0.0022 S32: -0.0789 S33: 0.0061 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.0312 14.0302 33.5351 REMARK 3 T TENSOR REMARK 3 T11: 0.1199 T22: 0.0958 REMARK 3 T33: 0.1033 T12: 0.0069 REMARK 3 T13: -0.0126 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 3.9319 L22: 2.7213 REMARK 3 L33: 0.4555 L12: -0.1963 REMARK 3 L13: -0.3744 L23: -0.0909 REMARK 3 S TENSOR REMARK 3 S11: 0.1047 S12: 0.1830 S13: -0.1777 REMARK 3 S21: -0.1277 S22: -0.0961 S23: -0.0206 REMARK 3 S31: 0.0417 S32: -0.0350 S33: -0.0454 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 38 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9475 28.8457 39.2722 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.0590 REMARK 3 T33: 0.0614 T12: -0.0015 REMARK 3 T13: -0.0073 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.9662 L22: 2.7839 REMARK 3 L33: 2.1728 L12: -0.4833 REMARK 3 L13: 0.1106 L23: 0.4861 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.0744 S13: -0.0494 REMARK 3 S21: -0.0637 S22: -0.0186 S23: 0.1762 REMARK 3 S31: -0.0699 S32: -0.1135 S33: 0.0304 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 60 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.8467 29.8376 30.4812 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.0978 REMARK 3 T33: 0.0670 T12: -0.0006 REMARK 3 T13: 0.0133 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 3.8883 L22: 3.1356 REMARK 3 L33: 2.6898 L12: 0.6837 REMARK 3 L13: 0.5652 L23: 1.0175 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.3231 S13: -0.1048 REMARK 3 S21: -0.2017 S22: 0.0329 S23: -0.1128 REMARK 3 S31: 0.0121 S32: 0.0610 S33: 0.0083 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 83 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.6122 36.8957 39.9397 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0850 REMARK 3 T33: 0.1300 T12: -0.0235 REMARK 3 T13: -0.0018 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 5.2415 L22: 5.5641 REMARK 3 L33: 5.7015 L12: -0.7907 REMARK 3 L13: -0.2995 L23: 0.5109 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: -0.2827 S13: 0.2642 REMARK 3 S21: 0.0880 S22: 0.1253 S23: -0.2614 REMARK 3 S31: -0.2018 S32: 0.5239 S33: -0.1922 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 95 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6542 36.7215 22.3703 REMARK 3 T TENSOR REMARK 3 T11: 0.3883 T22: 0.3618 REMARK 3 T33: 0.2869 T12: -0.1405 REMARK 3 T13: -0.1048 T23: 0.1559 REMARK 3 L TENSOR REMARK 3 L11: 5.0574 L22: 1.9093 REMARK 3 L33: 7.2616 L12: 1.3020 REMARK 3 L13: 3.8324 L23: 3.2728 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: 0.5254 S13: 0.1733 REMARK 3 S21: -0.7121 S22: 0.0611 S23: -0.0193 REMARK 3 S31: 0.3332 S32: 0.2449 S33: -0.0628 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 101 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.2160 30.3347 37.4543 REMARK 3 T TENSOR REMARK 3 T11: 0.0733 T22: 0.0673 REMARK 3 T33: 0.0666 T12: -0.0084 REMARK 3 T13: -0.0091 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.9705 L22: 3.6811 REMARK 3 L33: 2.3039 L12: -0.1935 REMARK 3 L13: -0.3258 L23: -0.1678 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.1226 S13: 0.0894 REMARK 3 S21: 0.0336 S22: 0.0373 S23: -0.0497 REMARK 3 S31: -0.1515 S32: 0.0498 S33: -0.0214 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35744 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% V/V TACSIMATE PH 4.0, 20% W/V PEG REMARK 280 3350, CRYO GLYCEROL 15%, TRYPSIN TREATED, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.34550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.62050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.34550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.62050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE C -19 REMARK 465 HIS C -18 REMARK 465 HIS C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 GLU C -12 REMARK 465 ASN C -11 REMARK 465 LEU C -10 REMARK 465 TYR C -9 REMARK 465 PHE C -8 REMARK 465 GLN C -7 REMARK 465 SER C -6 REMARK 465 ASN C -5 REMARK 465 ALA C -4 REMARK 465 ALA C -3 REMARK 465 LYS C -2 REMARK 465 ASN C -1 REMARK 465 SER C 0 REMARK 465 LEU C 1 REMARK 465 SER C 121 REMARK 465 VAL C 122 REMARK 465 LYS C 123 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY C 84 O HOH C 301 1.81 REMARK 500 O HOH A 322 O HOH C 424 2.06 REMARK 500 O HOH A 371 O HOH A 421 2.11 REMARK 500 O HOH C 340 O HOH C 466 2.11 REMARK 500 O HOH A 382 O HOH C 326 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 73.20 -152.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 442 DISTANCE = 6.34 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CPX300613 RELATED DB: TARGETTRACK DBREF 7M5F A 5 102 PDB 7M5F 7M5F 5 102 DBREF1 7M5F C -3 123 UNP A0A656UUJ3_SERMA DBREF2 7M5F C A0A656UUJ3 3517 3643 SEQADV 7M5F MSE C -19 UNP A0A656UUJ INITIATING METHIONINE SEQADV 7M5F HIS C -18 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F HIS C -17 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F HIS C -16 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F HIS C -15 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F HIS C -14 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F HIS C -13 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F GLU C -12 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F ASN C -11 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F LEU C -10 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F TYR C -9 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F PHE C -8 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F GLN C -7 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F SER C -6 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F ASN C -5 UNP A0A656UUJ EXPRESSION TAG SEQADV 7M5F ALA C -4 UNP A0A656UUJ EXPRESSION TAG SEQRES 1 A 98 MSE LYS GLU ILE LYS LEU MSE ALA ASP TYR HIS CYS TYR SEQRES 2 A 98 PRO LEU TRP GLY THR THR PRO ASP ASP PHE GLY ASP ILE SEQRES 3 A 98 SER PRO ASP GLU LEU PRO ILE SER LEU GLY LEU LYS ASN SEQRES 4 A 98 SER LEU GLU ALA TRP ALA LYS ARG TYR ASP ALA ILE LEU SEQRES 5 A 98 ASN THR ASP ASP PRO ALA LEU SER GLY PHE LYS SER VAL SEQRES 6 A 98 GLU GLU GLU LYS LEU PHE ILE ASP ASP GLY TYR LYS LEU SEQRES 7 A 98 ALA GLU LEU LEU GLN GLU GLU LEU GLY SER ALA TYR LYS SEQRES 8 A 98 VAL ILE TYR HIS ALA ASP TYR SEQRES 1 C 143 MSE HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 C 143 SER ASN ALA ALA LYS ASN SER LEU THR THR LYS SER LEU SEQRES 3 C 143 PHE LYS GLU MSE THR ILE GLN GLY ILE LYS PHE THR PRO SEQRES 4 C 143 GLU ASN VAL VAL GLY ALA ALA LYS ASP ASN SER GLY LYS SEQRES 5 C 143 ILE ILE PHE LEU GLU LYS GLY ASN SER LYS SER GLY LEU SEQRES 6 C 143 GLN HIS ILE VAL GLU GLU HIS GLY ASP GLN PHE ALA GLN SEQRES 7 C 143 ILE GLY VAL SER GLU ALA ARG ILE PRO ASP VAL VAL MSE SEQRES 8 C 143 LYS ALA VAL THR ASP GLY LYS ILE VAL GLY TYR GLN GLY SEQRES 9 C 143 ALA GLY ALA GLY ARG PRO ILE TYR GLU THR MSE ILE ASP SEQRES 10 C 143 GLY LYS LYS TYR ASN ILE ALA VAL THR VAL GLY SER ASN SEQRES 11 C 143 GLY TYR VAL VAL GLY ALA ASN LEU ARG GLY SER VAL LYS MODRES 7M5F MSE C 10 MET MODIFIED RESIDUE MODRES 7M5F MSE C 71 MET MODIFIED RESIDUE MODRES 7M5F MSE C 95 MET MODIFIED RESIDUE HET MSE A 5 16 HET MSE A 11 17 HET MSE C 10 17 HET MSE C 71 17 HET MSE C 95 17 HET MLI A 201 9 HET MLI C 201 9 HET MLI C 202 9 HETNAM MSE SELENOMETHIONINE HETNAM MLI MALONATE ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 3 MLI 3(C3 H2 O4 2-) FORMUL 6 HOH *323(H2 O) HELIX 1 AA1 THR A 23 PHE A 27 5 5 HELIX 2 AA2 SER A 31 LEU A 35 5 5 HELIX 3 AA3 SER A 38 ALA A 54 1 17 HELIX 4 AA4 ASP A 60 SER A 64 5 5 HELIX 5 AA5 SER A 68 GLY A 91 1 24 HELIX 6 AA6 THR C 3 GLN C 13 1 11 HELIX 7 AA7 THR C 18 GLU C 20 5 3 HELIX 8 AA8 GLY C 44 ILE C 59 1 16 HELIX 9 AA9 SER C 62 ALA C 64 5 3 HELIX 10 AB1 ARG C 65 GLY C 77 1 13 SHEET 1 AA1 4 GLY A 28 ASP A 29 0 SHEET 2 AA1 4 LEU A 19 GLY A 21 -1 N GLY A 21 O GLY A 28 SHEET 3 AA1 4 LYS A 6 LEU A 10 -1 N LYS A 9 O TRP A 20 SHEET 4 AA1 4 TYR A 94 TYR A 98 1 O LYS A 95 N ILE A 8 SHEET 1 AA2 2 VAL C 22 LYS C 27 0 SHEET 2 AA2 2 ILE C 33 GLU C 37 -1 O ILE C 34 N ALA C 26 SHEET 1 AA3 4 LYS C 78 TYR C 82 0 SHEET 2 AA3 4 PRO C 90 ILE C 96 -1 O GLU C 93 N LYS C 78 SHEET 3 AA3 4 LYS C 99 VAL C 107 -1 O LYS C 99 N ILE C 96 SHEET 4 AA3 4 VAL C 113 ARG C 119 -1 O ASN C 117 N ALA C 104 LINK C MSE A 5 N LYS A 6 1555 1555 1.32 LINK C LEU A 10 N MSE A 11 1555 1555 1.33 LINK C MSE A 11 N ALA A 12 1555 1555 1.32 LINK C GLU C 9 N MSE C 10 1555 1555 1.33 LINK C MSE C 10 N THR C 11 1555 1555 1.33 LINK C VAL C 70 N MSE C 71 1555 1555 1.33 LINK C MSE C 71 N LYS C 72 1555 1555 1.34 LINK C THR C 94 N MSE C 95 1555 1555 1.32 LINK C MSE C 95 N ILE C 96 1555 1555 1.33 CRYST1 60.691 97.241 44.495 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022474 0.00000 HETATM 1 N MSE A 5 38.468 54.769 41.168 1.00 41.92 N ANISOU 1 N MSE A 5 6072 4232 5624 1352 -774 417 N HETATM 2 CA MSE A 5 38.109 53.515 41.817 1.00 41.70 C ANISOU 2 CA MSE A 5 5853 4375 5617 1316 -766 318 C HETATM 3 C MSE A 5 39.143 52.464 41.480 1.00 37.58 C ANISOU 3 C MSE A 5 5353 3904 5023 1171 -718 351 C HETATM 4 O MSE A 5 39.578 52.353 40.333 1.00 46.23 O ANISOU 4 O MSE A 5 6560 4982 6024 1137 -741 442 O HETATM 5 CB MSE A 5 36.730 53.028 41.371 1.00 42.78 C ANISOU 5 CB MSE A 5 5854 4658 5742 1427 -876 276 C HETATM 6 CG MSE A 5 36.295 51.707 42.010 1.00 52.43 C ANISOU 6 CG MSE A 5 6882 6057 6983 1375 -859 167 C HETATM 7 SE MSE A 5 36.065 51.824 43.955 1.00 63.01 SE ANISOU 7 SE MSE A 5 8089 7403 8450 1360 -755 22 SE HETATM 8 CE MSE A 5 35.241 53.575 43.999 1.00 25.31 C ANISOU 8 CE MSE A 5 3372 2491 3754 1541 -799 31 C HETATM 9 HA MSE A 5 38.062 53.658 42.775 1.00 50.05 H HETATM 10 HB2 MSE A 5 36.072 53.700 41.608 1.00 51.34 H HETATM 11 HB3 MSE A 5 36.742 52.900 40.410 1.00 51.34 H HETATM 12 HG2 MSE A 5 35.446 51.437 41.625 1.00 62.93 H HETATM 13 HG3 MSE A 5 36.970 51.034 41.830 1.00 62.93 H HETATM 14 HE1 MSE A 5 34.826 53.707 44.865 1.00 30.34 H HETATM 15 HE2 MSE A 5 35.924 54.248 43.852 1.00 30.34 H HETATM 16 HE3 MSE A 5 34.571 53.626 43.299 1.00 30.34 H