HEADER LYASE 01-APR-21 7MCB TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS CYSTATHIONINE GAMMA LYASE TITLE 2 HOLOENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL CYSTATHIONINE GAMMA-LYASE/HOMOCYSTEINE COMPND 3 DESULFHYDRASE; COMPND 4 CHAIN: H; COMPND 5 SYNONYM: CYSTATHIONINE BETA-LYASE,CYSTATHIONINE GAMMA-LYASE, COMPND 6 CYSTATHIONINE GAMMA-SYNTHASE; COMPND 7 EC: 4.4.1.1,4.4.1.8,2.5.1.48; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: MCCB, MCCB_2, BTN44_10510, DD547_00421, DQV53_02590, SOURCE 5 EP54_01605, EQ90_13355, FA040_13395, G0X12_04165, G6Y10_12435, SOURCE 6 GO746_10250, GO803_10255, GO805_07485, GO821_10445, GO894_05080, SOURCE 7 GO942_04060, HMPREF2819_13610, HMPREF3211_01439, NCTC10654_00533, SOURCE 8 NCTC10702_00840, NCTC10988_00626, SAMEA1029528_01119, SOURCE 9 SAMEA1029547_02560, SAMEA1029553_00881, SAMEA103891286_02662, SOURCE 10 SAMEA1964876_02233, SAMEA1965205_02550, SAMEA1966505_02559, SOURCE 11 SAMEA1969349_02528, SAMEA1969845_00024, SAMEA1971706_00840, SOURCE 12 SAMEA1972827_00442, SAMEA2076212_02307, SAMEA2076218_02633, SOURCE 13 SAMEA2076220_02515, SAMEA2076226_02545, SAMEA2076463_02448, SOURCE 14 SAMEA2076464_02504, SAMEA2076470_02202, SAMEA2076472_02415, SOURCE 15 SAMEA2076478_01397, SAMEA2076480_02228, SAMEA2076481_02579, SOURCE 16 SAMEA2076743_02529, SAMEA2076745_00024, SAMEA2076746_01199, SOURCE 17 SAMEA2076747_02516, SAMEA2076749_02428, SAMEA2076751_02538, SOURCE 18 SAMEA2076752_00581, SAMEA2076755_02246, SAMEA2076756_02304, SOURCE 19 SAMEA2076758_02592, SAMEA2076759_02587, SAMEA2076761_00997, SOURCE 20 SAMEA2076762_02546, SAMEA2076763_01275, SAMEA2076764_00443, SOURCE 21 SAMEA2076765_02426, SAMEA2077023_00443, SAMEA2077025_02246, SOURCE 22 SAMEA2077027_02519, SAMEA2077029_02492, SAMEA2077031_02282, SOURCE 23 SAMEA2077034_02536, SAMEA2077035_00908, SAMEA2077039_00580, SOURCE 24 SAMEA2077040_02514, SAMEA2077041_00442, SAMEA2077044_02519, SOURCE 25 SAMEA2077045_01356, SAMEA2077046_02211, SAMEA2077293_01201, SOURCE 26 SAMEA2077294_01116, SAMEA2077295_02535, SAMEA2077297_02465, SOURCE 27 SAMEA2077300_00660, SAMEA2077301_02506, SAMEA2077302_01011, SOURCE 28 SAMEA2077303_02488, SAMEA2077307_02470, SAMEA2077832_02515, SOURCE 29 SAMEA2078252_01326, SAMEA2078256_02526, SAMEA2078307_01240, SOURCE 30 SAMEA2078308_02477, SAMEA2078553_02466, SAMEA2078558_00909, SOURCE 31 SAMEA2078560_01135, SAMEA2078569_01369, SAMEA2078570_02481, SOURCE 32 SAMEA2078572_01608, SAMEA2078824_02504, SAMEA2078837_01023, SOURCE 33 SAMEA2079048_02598, SAMEA2079051_01218, SAMEA2079277_01392, SOURCE 34 SAMEA2079291_02442, SAMEA2079503_01420, SAMEA2079507_02480, SOURCE 35 SAMEA2079512_02454, SAMEA2079517_02461, SAMEA2079724_02523, SOURCE 36 SAMEA2079727_02402, SAMEA2079728_02358, SAMEA2079732_00024, SOURCE 37 SAMEA2079946_02619, SAMEA2079949_02348, SAMEA2079951_02599, SOURCE 38 SAMEA2079952_00024, SAMEA2079957_00024, SAMEA2079958_00024, SOURCE 39 SAMEA2079960_02599, SAMEA2079961_02614, SAMEA2079968_02549, SOURCE 40 SAMEA2080329_00310, SAMEA2080330_00310, SAMEA2080334_02579, SOURCE 41 SAMEA2080433_00024, SAMEA2080812_02589, SAMEA2080898_01599, SOURCE 42 SAMEA2080900_02516, SAMEA2080904_02530, SAMEA2080913_02537, SOURCE 43 SAMEA2081043_02522, SAMEA2081053_02264, SAMEA2081054_02235, SOURCE 44 SAMEA2081055_02550, SAMEA2081060_02563, SAMEA2081211_02363, SOURCE 45 SAMEA2081213_02446, SAMEA2081218_00838, SAMEA2081341_02527, SOURCE 46 SAMEA2081342_02593, SAMEA2081349_02540, SAMEA2081359_02598, SOURCE 47 SAMEA2081362_00464, SAMEA2081468_01079, SAMEA2081474_00910, SOURCE 48 SAMEA2081475_02534, SAMEA2081476_02404, SAMEA2081479_00996, SOURCE 49 SAMEA2081480_00533, SAMEA2081560_02486, SAMEA2081561_02504, SOURCE 50 SAMEA2081564_01449, SAMEA2081567_02515, SAMEA2081568_01446, SOURCE 51 SAMEA2081569_02545, SAMEA2081570_01449, SAMEA2081571_01216, SOURCE 52 SAMEA2081572_02471, SAMEA2081573_02217, SAMEA2081575_00580, SOURCE 53 SAMEA2081577_01158, SAMEA2081578_02511, SAMEA2081579_02531, SOURCE 54 SAMEA2081581_02162, SAMEA2081582_02344, SAMEA2081673_02599, SOURCE 55 SAMEA2081674_02397, SAMEA4008573_02705, SAMEA4008676_02295, SOURCE 56 SAMEA70146418_02721, SAMEA958766_00501, SAMEA958770_02469, SOURCE 57 SAMEA958772_00350, SAMEA958778_00586, SAMEA958779_02116, SOURCE 58 SAMEA958785_02543, SAMEA958793_02555, SAMEA958798_02471, SOURCE 59 SAMEA958804_02558, SAMEA958810_02365, SAMEA958836_00976, SOURCE 60 SAMEA958838_01939, SAMEA958845_00024, SAMEA958846_02565, SOURCE 61 SAMEA958848_02402, SAMEA958855_02196, SAMEA958858_00594, SOURCE 62 SAMEA958898_01850, SAMEA958906_02198, SAMEA958924_02531, SOURCE 63 SAMEA958925_02436, SAMEA958951_01115, SAMEA958953_00350, SOURCE 64 SAMEA958961_02116, SAMEA958979_00024, SAMEA958987_02419, SOURCE 65 SAMEA958995_02394; SOURCE 66 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 67 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AMINO-ACID BIOSYNTHESIS, CYSTEINE BIOSYNTHESIS, HYDROGEN SULFIDE KEYWDS 2 PRODUCTION, PLP DEPENDENT ENZYME, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.NUTHANAKANTI,A.SERGANOV,A.KAUSHIK REVDAT 3 15-NOV-23 7MCB 1 REMARK REVDAT 2 18-OCT-23 7MCB 1 REMARK REVDAT 1 23-JUN-21 7MCB 0 JRNL AUTH K.SHATALIN,A.NUTHANAKANTI,A.KAUSHIK,D.SHISHOV,A.PESELIS, JRNL AUTH 2 I.SHAMOVSKY,B.PANI,M.LECHPAMMER,N.VASILYEV,E.SHATALINA, JRNL AUTH 3 D.REBATCHOUK,A.MIRONOV,P.FEDICHEV,A.SERGANOV,E.NUDLER JRNL TITL INHIBITORS OF BACTERIAL H 2 S BIOGENESIS TARGETING JRNL TITL 2 ANTIBIOTIC RESISTANCE AND TOLERANCE. JRNL REF SCIENCE V. 372 1169 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 34112687 JRNL DOI 10.1126/SCIENCE.ABD8377 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 45024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.440 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3000 - 5.1400 1.00 3314 154 0.1671 0.1784 REMARK 3 2 5.1400 - 4.0800 1.00 3153 146 0.1337 0.1626 REMARK 3 3 4.0800 - 3.5700 1.00 3126 145 0.1434 0.1526 REMARK 3 4 3.5700 - 3.2400 1.00 3072 143 0.1562 0.1833 REMARK 3 5 3.2400 - 3.0100 1.00 3083 143 0.1702 0.2055 REMARK 3 6 3.0100 - 2.8300 1.00 3083 144 0.1704 0.2044 REMARK 3 7 2.8300 - 2.6900 1.00 3041 140 0.1700 0.1916 REMARK 3 8 2.6900 - 2.5700 1.00 3061 141 0.1748 0.1962 REMARK 3 9 2.5700 - 2.4800 1.00 3044 143 0.1718 0.2041 REMARK 3 10 2.4800 - 2.3900 1.00 3036 141 0.1765 0.2210 REMARK 3 11 2.3900 - 2.3100 1.00 3029 140 0.1843 0.2135 REMARK 3 12 2.3100 - 2.2500 1.00 3031 142 0.1886 0.1977 REMARK 3 13 2.2500 - 2.1900 1.00 2992 138 0.1966 0.2089 REMARK 3 14 2.1900 - 2.1400 0.97 2962 137 0.2321 0.2389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.163 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.374 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3016 REMARK 3 ANGLE : 0.849 4102 REMARK 3 CHIRALITY : 0.054 488 REMARK 3 PLANARITY : 0.006 521 REMARK 3 DIHEDRAL : 4.144 2437 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MCB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000255958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92010 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45133 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.70 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 18.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IXZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES , PH 7.6 1.4 M TRI SODIUM REMARK 280 CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.56650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 52.56650 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.07400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.56650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.03700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.56650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 216.11100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.56650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 216.11100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.56650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.03700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 52.56650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 52.56650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 144.07400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 52.56650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 52.56650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 144.07400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 52.56650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 216.11100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 52.56650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 72.03700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.56650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 72.03700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 52.56650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 216.11100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.56650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 52.56650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 144.07400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -175.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 105.13300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 105.13300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 105.13300 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 105.13300 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 513 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 683 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 744 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 88 CD CE NZ REMARK 470 LYS H 108 CE NZ REMARK 470 LYS H 215 CE NZ REMARK 470 LYS H 303 CE NZ REMARK 470 LYS H 349 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU H 44 -24.32 -141.10 REMARK 500 VAL H 109 -64.99 -109.52 REMARK 500 THR H 176 162.05 68.04 REMARK 500 LLP H 196 -119.43 -94.57 REMARK 500 GLN H 271 -110.68 -95.69 REMARK 500 HIS H 275 142.28 -170.60 REMARK 500 SER H 323 174.00 82.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GOL H 407 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 9 O REMARK 620 2 GLY H 11 O 97.5 REMARK 620 3 HOH H 594 O 88.1 85.7 REMARK 620 4 HOH H 624 O 175.0 85.6 88.3 REMARK 620 5 HOH H 653 O 80.4 71.4 152.5 104.3 REMARK 620 6 HOH H 674 O 88.0 169.4 85.5 88.3 118.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH H 503 O REMARK 620 2 HOH H 525 O 89.4 REMARK 620 3 HOH H 733 O 80.0 85.1 REMARK 620 4 HOH H 741 O 117.1 101.7 161.3 REMARK 620 5 HOH H 746 O 155.6 92.7 76.0 86.2 REMARK 620 N 1 2 3 4 DBREF 7MCB H 1 380 UNP X5E0F1 X5E0F1_STAAU 1 380 SEQADV 7MCB SER H 1 UNP X5E0F1 MET 1 ENGINEERED MUTATION SEQRES 1 H 380 SER ASN LYS LYS THR LYS LEU ILE HIS GLY GLY HIS THR SEQRES 2 H 380 THR ASP ASP TYR THR GLY ALA VAL THR THR PRO ILE TYR SEQRES 3 H 380 GLN THR SER THR TYR LEU GLN ASP ASP ILE GLY ASP LEU SEQRES 4 H 380 ARG GLN GLY TYR GLU TYR SER ARG THR ALA ASN PRO THR SEQRES 5 H 380 ARG SER SER VAL GLU SER VAL ILE ALA THR LEU GLU ASN SEQRES 6 H 380 GLY LYS HIS GLY PHE ALA PHE SER SER GLY VAL ALA ALA SEQRES 7 H 380 ILE SER ALA VAL VAL MET LEU LEU ASP LYS GLY ASP HIS SEQRES 8 H 380 ILE ILE LEU ASN SER ASP VAL TYR GLY GLY THR TYR ARG SEQRES 9 H 380 ALA LEU THR LYS VAL PHE THR ARG PHE GLY ILE GLU VAL SEQRES 10 H 380 ASP PHE VAL ASP THR THR HIS THR ASP SER ILE VAL GLN SEQRES 11 H 380 ALA ILE ARG PRO THR THR LYS MET LEU PHE ILE GLU THR SEQRES 12 H 380 PRO SER ASN PRO LEU LEU ARG VAL THR ASP ILE LYS LYS SEQRES 13 H 380 SER ALA GLU ILE ALA LYS GLU HIS GLY LEU ILE SER VAL SEQRES 14 H 380 VAL ASP ASN THR PHE MET THR PRO TYR TYR GLN ASN PRO SEQRES 15 H 380 LEU ASP LEU GLY ILE ASP ILE VAL LEU HIS SER ALA THR SEQRES 16 H 380 LLP TYR LEU GLY GLY HIS SER ASP VAL VAL ALA GLY LEU SEQRES 17 H 380 VAL ALA THR SER ASP ASP LYS LEU ALA GLU ARG LEU ALA SEQRES 18 H 380 PHE ILE SER ASN SER THR GLY GLY ILE LEU GLY PRO GLN SEQRES 19 H 380 ASP SER TYR LEU LEU VAL ARG GLY ILE LYS THR LEU GLY SEQRES 20 H 380 LEU ARG MET GLU GLN ILE ASN ARG SER VAL ILE GLU ILE SEQRES 21 H 380 ILE LYS MET LEU GLN ALA HIS PRO ALA VAL GLN GLN VAL SEQRES 22 H 380 PHE HIS PRO SER ILE GLU SER HIS LEU ASN HIS ASP VAL SEQRES 23 H 380 HIS MET ALA GLN ALA ASP GLY HIS THR GLY VAL ILE ALA SEQRES 24 H 380 PHE GLU VAL LYS ASN THR GLU SER ALA LYS GLN LEU ILE SEQRES 25 H 380 LYS ALA THR SER TYR TYR THR LEU ALA GLU SER LEU GLY SEQRES 26 H 380 ALA VAL GLU SER LEU ILE SER VAL PRO ALA LEU MET THR SEQRES 27 H 380 HIS ALA SER ILE PRO ALA ASP ILE ARG ALA LYS GLU GLY SEQRES 28 H 380 ILE THR ASP GLY LEU VAL ARG ILE SER VAL GLY ILE GLU SEQRES 29 H 380 ASP THR GLU ASP LEU VAL ASP ASP LEU LYS GLN ALA LEU SEQRES 30 H 380 ASP THR LEU MODRES 7MCB LLP H 196 LYS MODIFIED RESIDUE HET LLP H 196 24 HET PLP H 401 15 HET NA H 402 1 HET NA H 403 1 HET GOL H 404 6 HET GOL H 405 6 HET GOL H 406 6 HET GOL H 407 5 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 NA 2(NA 1+) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *248(H2 O) HELIX 1 AA1 ASN H 2 GLY H 10 1 9 HELIX 2 AA2 ASN H 50 GLU H 64 1 15 HELIX 3 AA3 SER H 74 MET H 84 1 11 HELIX 4 AA4 TYR H 99 VAL H 109 1 11 HELIX 5 AA5 PHE H 110 GLY H 114 5 5 HELIX 6 AA6 THR H 125 ILE H 132 1 8 HELIX 7 AA7 ASP H 153 HIS H 164 1 12 HELIX 8 AA8 ASN H 181 GLY H 186 5 6 HELIX 9 AA9 ASP H 213 GLY H 228 1 16 HELIX 10 AB1 GLY H 232 THR H 245 1 14 HELIX 11 AB2 THR H 245 HIS H 267 1 23 HELIX 12 AB3 ASN H 283 ALA H 291 1 9 HELIX 13 AB4 ASN H 304 THR H 315 1 12 HELIX 14 AB5 VAL H 333 THR H 338 1 6 HELIX 15 AB6 PRO H 343 GLY H 351 1 9 HELIX 16 AB7 ASP H 365 THR H 379 1 15 SHEET 1 AA1 7 HIS H 68 PHE H 72 0 SHEET 2 AA1 7 GLY H 207 THR H 211 -1 O GLY H 207 N PHE H 72 SHEET 3 AA1 7 ILE H 189 SER H 193 -1 N VAL H 190 O ALA H 210 SHEET 4 AA1 7 ILE H 167 ASP H 171 1 N VAL H 170 O LEU H 191 SHEET 5 AA1 7 THR H 136 GLU H 142 1 N LYS H 137 O ILE H 167 SHEET 6 AA1 7 HIS H 91 ASN H 95 1 N ILE H 93 O PHE H 140 SHEET 7 AA1 7 GLU H 116 VAL H 120 1 O GLU H 116 N ILE H 92 SHEET 1 AA2 5 VAL H 273 PHE H 274 0 SHEET 2 AA2 5 VAL H 297 GLU H 301 -1 O ALA H 299 N PHE H 274 SHEET 3 AA2 5 LEU H 356 SER H 360 -1 O VAL H 357 N PHE H 300 SHEET 4 AA2 5 SER H 329 SER H 332 -1 N LEU H 330 O SER H 360 SHEET 5 AA2 5 TYR H 318 LEU H 320 1 N THR H 319 O SER H 329 LINK N SER H 1 C4A PLP H 401 1555 1555 1.43 LINK C THR H 195 N LLP H 196 1555 1555 1.34 LINK C LLP H 196 N TYR H 197 1555 1555 1.33 LINK O HIS H 9 NA NA H 403 1555 1555 2.45 LINK O GLY H 11 NA NA H 403 1555 1555 2.51 LINK NA NA H 402 O HOH H 503 1555 1555 2.56 LINK NA NA H 402 O HOH H 525 1555 1555 2.56 LINK NA NA H 402 O HOH H 733 1555 1555 2.78 LINK NA NA H 402 O HOH H 741 1555 1555 2.46 LINK NA NA H 402 O HOH H 746 1555 1555 2.87 LINK NA NA H 403 O HOH H 594 1555 1555 2.66 LINK NA NA H 403 O HOH H 624 1555 1555 2.47 LINK NA NA H 403 O HOH H 653 1555 1555 2.51 LINK NA NA H 403 O HOH H 674 1555 1555 2.81 CISPEP 1 THR H 143 PRO H 144 0 -3.29 CISPEP 2 ASN H 146 PRO H 147 0 -6.54 CRYST1 105.133 105.133 288.148 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009512 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003470 0.00000