HEADER LYASE 02-APR-21 7MCQ TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS CYSTATHIONINE GAMMA LYASE, TITLE 2 AOAA-BOUND ENZYME IN DIMERIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL CYSTATHIONINE GAMMA-LYASE/HOMOCYSTEINE COMPND 3 DESULFHYDRASE; COMPND 4 CHAIN: A, H; COMPND 5 SYNONYM: CYSTATHIONINE BETA-LYASE,CYSTATHIONINE GAMMA-LYASE, COMPND 6 CYSTATHIONINE GAMMA-SYNTHASE; COMPND 7 EC: 4.4.1.1,4.4.1.8,2.5.1.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: MCCB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AMINO-ACID BIOSYNTHESIS, CYSTEINE BIOSYNTHESIS, HYDROGEN SULFIDE KEYWDS 2 PRODUCTION, PLP DEPENDENT ENZYME, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.NUTHANAKANTI,A.SERGANOV,A.KAUSHIK REVDAT 2 18-OCT-23 7MCQ 1 REMARK REVDAT 1 23-JUN-21 7MCQ 0 JRNL AUTH K.SHATALIN,A.NUTHANAKANTI,A.KAUSHIK,D.SHISHOV,A.PESELIS, JRNL AUTH 2 I.SHAMOVSKY,B.PANI,M.LECHPAMMER,N.VASILYEV,E.SHATALINA, JRNL AUTH 3 D.REBATCHOUK,A.MIRONOV,P.FEDICHEV,A.SERGANOV,E.NUDLER JRNL TITL INHIBITORS OF BACTERIAL H 2 S BIOGENESIS TARGETING JRNL TITL 2 ANTIBIOTIC RESISTANCE AND TOLERANCE. JRNL REF SCIENCE V. 372 1169 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 34112687 JRNL DOI 10.1126/SCIENCE.ABD8377 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7600 - 8.3700 0.98 2555 135 0.2092 0.2415 REMARK 3 2 8.3700 - 6.6700 1.00 2594 142 0.1696 0.1900 REMARK 3 3 6.6700 - 5.8300 1.00 2581 147 0.1968 0.2161 REMARK 3 4 5.8300 - 5.3000 1.00 2573 138 0.1569 0.2091 REMARK 3 5 5.3000 - 4.9200 1.00 2588 145 0.1413 0.1666 REMARK 3 6 4.9200 - 4.6300 1.00 2604 139 0.1270 0.1361 REMARK 3 7 4.6300 - 4.4000 1.00 2597 146 0.1202 0.1530 REMARK 3 8 4.4000 - 4.2100 1.00 2576 144 0.1294 0.1405 REMARK 3 9 4.2100 - 4.0500 1.00 2602 143 0.1373 0.1629 REMARK 3 10 4.0500 - 3.9100 1.00 2581 142 0.1329 0.1587 REMARK 3 11 3.9100 - 3.7900 1.00 2587 138 0.1412 0.2037 REMARK 3 12 3.7900 - 3.6800 1.00 2598 145 0.1499 0.2156 REMARK 3 13 3.6800 - 3.5800 1.00 2561 134 0.1611 0.2023 REMARK 3 14 3.5800 - 3.5000 1.00 2603 148 0.1690 0.2047 REMARK 3 15 3.5000 - 3.4200 1.00 2608 146 0.1693 0.1984 REMARK 3 16 3.4200 - 3.3400 1.00 2580 138 0.2000 0.2320 REMARK 3 17 3.3400 - 3.2800 1.00 2579 145 0.2043 0.2332 REMARK 3 18 3.2800 - 3.2200 1.00 2589 148 0.2142 0.2613 REMARK 3 19 3.2200 - 3.1600 1.00 2581 135 0.2208 0.2461 REMARK 3 20 3.1600 - 3.1000 1.00 2624 145 0.2255 0.2821 REMARK 3 21 3.1000 - 3.0500 1.00 2537 142 0.2370 0.2644 REMARK 3 22 3.0500 - 3.0100 1.00 2610 147 0.2489 0.2998 REMARK 3 23 3.0100 - 2.9600 1.00 2560 138 0.2583 0.3130 REMARK 3 24 2.9600 - 2.9200 1.00 2614 144 0.2764 0.2954 REMARK 3 25 2.9200 - 2.8800 1.00 2606 138 0.2828 0.3014 REMARK 3 26 2.8800 - 2.8400 0.98 2536 137 0.3092 0.3563 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.317 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.609 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5955 REMARK 3 ANGLE : 1.057 8096 REMARK 3 CHIRALITY : 0.059 972 REMARK 3 PLANARITY : 0.007 1034 REMARK 3 DIHEDRAL : 18.419 2144 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 1 THROUGH 284 OR REMARK 3 RESID 286 THROUGH 302 OR (RESID 303 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR RESID 304 REMARK 3 THROUGH 312 OR (RESID 313 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG )) OR RESID 314 THROUGH 380 OR REMARK 3 RESID 401)) REMARK 3 SELECTION : (CHAIN 'H' AND (RESID 1 THROUGH 66 OR REMARK 3 (RESID 67 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD )) OR RESID 68 THROUGH 87 OR (RESID 88 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD OR REMARK 3 NAME CE )) OR RESID 89 THROUGH 154 OR REMARK 3 (RESID 155 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD )) OR RESID 156 THROUGH 284 OR RESID REMARK 3 286 THROUGH 348 OR (RESID 349 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR (RESID 350 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB OR NAME CG REMARK 3 )) OR RESID 351 THROUGH 380 OR RESID 401)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000255994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91956 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38274 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.845 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.05600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IXZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 7.6, 1.4 M TRI REMARK 280 SODIUM CITRATE, 10 MM AOAA, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.68100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 215.52150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.84050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 143.68100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.84050 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 215.52150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -172.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.84050 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 67 CE NZ REMARK 470 LYS A 88 NZ REMARK 470 LYS A 155 CE NZ REMARK 470 LYS A 313 CE NZ REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 GLU A 350 CD OE1 OE2 REMARK 470 LYS H 303 CD CE NZ REMARK 470 LYS H 313 CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 346 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 103 O ASP A 345 5655 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 109 -63.03 -122.38 REMARK 500 THR A 143 118.69 -160.98 REMARK 500 THR A 176 158.53 68.71 REMARK 500 LYS A 196 -116.70 -95.65 REMARK 500 SER A 323 -178.17 84.25 REMARK 500 MET A 337 -73.79 -125.67 REMARK 500 GLN H 27 83.79 -69.90 REMARK 500 VAL H 109 -65.16 -123.77 REMARK 500 THR H 143 118.05 -160.35 REMARK 500 THR H 176 157.81 67.88 REMARK 500 LYS H 196 -114.40 -93.78 REMARK 500 GLN H 271 -107.19 -88.59 REMARK 500 SER H 323 179.65 79.65 REMARK 500 MET H 337 -78.41 -128.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GOL A 405 REMARK 610 GOL H 404 REMARK 610 GOL H 405 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 O REMARK 620 2 GLY A 11 O 83.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 9 O REMARK 620 2 GLY H 11 O 74.8 REMARK 620 N 1 DBREF 7MCQ A 2 380 UNP X5E0F1 X5E0F1_STAAU 2 380 DBREF 7MCQ H 2 380 UNP X5E0F1 X5E0F1_STAAU 2 380 SEQADV 7MCQ SER A 1 UNP X5E0F1 EXPRESSION TAG SEQADV 7MCQ SER H 1 UNP X5E0F1 EXPRESSION TAG SEQRES 1 A 380 SER ASN LYS LYS THR LYS LEU ILE HIS GLY GLY HIS THR SEQRES 2 A 380 THR ASP ASP TYR THR GLY ALA VAL THR THR PRO ILE TYR SEQRES 3 A 380 GLN THR SER THR TYR LEU GLN ASP ASP ILE GLY ASP LEU SEQRES 4 A 380 ARG GLN GLY TYR GLU TYR SER ARG THR ALA ASN PRO THR SEQRES 5 A 380 ARG SER SER VAL GLU SER VAL ILE ALA THR LEU GLU ASN SEQRES 6 A 380 GLY LYS HIS GLY PHE ALA PHE SER SER GLY VAL ALA ALA SEQRES 7 A 380 ILE SER ALA VAL VAL MET LEU LEU ASP LYS GLY ASP HIS SEQRES 8 A 380 ILE ILE LEU ASN SER ASP VAL TYR GLY GLY THR TYR ARG SEQRES 9 A 380 ALA LEU THR LYS VAL PHE THR ARG PHE GLY ILE GLU VAL SEQRES 10 A 380 ASP PHE VAL ASP THR THR HIS THR ASP SER ILE VAL GLN SEQRES 11 A 380 ALA ILE ARG PRO THR THR LYS MET LEU PHE ILE GLU THR SEQRES 12 A 380 PRO SER ASN PRO LEU LEU ARG VAL THR ASP ILE LYS LYS SEQRES 13 A 380 SER ALA GLU ILE ALA LYS GLU HIS GLY LEU ILE SER VAL SEQRES 14 A 380 VAL ASP ASN THR PHE MET THR PRO TYR TYR GLN ASN PRO SEQRES 15 A 380 LEU ASP LEU GLY ILE ASP ILE VAL LEU HIS SER ALA THR SEQRES 16 A 380 LYS TYR LEU GLY GLY HIS SER ASP VAL VAL ALA GLY LEU SEQRES 17 A 380 VAL ALA THR SER ASP ASP LYS LEU ALA GLU ARG LEU ALA SEQRES 18 A 380 PHE ILE SER ASN SER THR GLY GLY ILE LEU GLY PRO GLN SEQRES 19 A 380 ASP SER TYR LEU LEU VAL ARG GLY ILE LYS THR LEU GLY SEQRES 20 A 380 LEU ARG MET GLU GLN ILE ASN ARG SER VAL ILE GLU ILE SEQRES 21 A 380 ILE LYS MET LEU GLN ALA HIS PRO ALA VAL GLN GLN VAL SEQRES 22 A 380 PHE HIS PRO SER ILE GLU SER HIS LEU ASN HIS ASP VAL SEQRES 23 A 380 HIS MET ALA GLN ALA ASP GLY HIS THR GLY VAL ILE ALA SEQRES 24 A 380 PHE GLU VAL LYS ASN THR GLU SER ALA LYS GLN LEU ILE SEQRES 25 A 380 LYS ALA THR SER TYR TYR THR LEU ALA GLU SER LEU GLY SEQRES 26 A 380 ALA VAL GLU SER LEU ILE SER VAL PRO ALA LEU MET THR SEQRES 27 A 380 HIS ALA SER ILE PRO ALA ASP ILE ARG ALA LYS GLU GLY SEQRES 28 A 380 ILE THR ASP GLY LEU VAL ARG ILE SER VAL GLY ILE GLU SEQRES 29 A 380 ASP THR GLU ASP LEU VAL ASP ASP LEU LYS GLN ALA LEU SEQRES 30 A 380 ASP THR LEU SEQRES 1 H 380 SER ASN LYS LYS THR LYS LEU ILE HIS GLY GLY HIS THR SEQRES 2 H 380 THR ASP ASP TYR THR GLY ALA VAL THR THR PRO ILE TYR SEQRES 3 H 380 GLN THR SER THR TYR LEU GLN ASP ASP ILE GLY ASP LEU SEQRES 4 H 380 ARG GLN GLY TYR GLU TYR SER ARG THR ALA ASN PRO THR SEQRES 5 H 380 ARG SER SER VAL GLU SER VAL ILE ALA THR LEU GLU ASN SEQRES 6 H 380 GLY LYS HIS GLY PHE ALA PHE SER SER GLY VAL ALA ALA SEQRES 7 H 380 ILE SER ALA VAL VAL MET LEU LEU ASP LYS GLY ASP HIS SEQRES 8 H 380 ILE ILE LEU ASN SER ASP VAL TYR GLY GLY THR TYR ARG SEQRES 9 H 380 ALA LEU THR LYS VAL PHE THR ARG PHE GLY ILE GLU VAL SEQRES 10 H 380 ASP PHE VAL ASP THR THR HIS THR ASP SER ILE VAL GLN SEQRES 11 H 380 ALA ILE ARG PRO THR THR LYS MET LEU PHE ILE GLU THR SEQRES 12 H 380 PRO SER ASN PRO LEU LEU ARG VAL THR ASP ILE LYS LYS SEQRES 13 H 380 SER ALA GLU ILE ALA LYS GLU HIS GLY LEU ILE SER VAL SEQRES 14 H 380 VAL ASP ASN THR PHE MET THR PRO TYR TYR GLN ASN PRO SEQRES 15 H 380 LEU ASP LEU GLY ILE ASP ILE VAL LEU HIS SER ALA THR SEQRES 16 H 380 LYS TYR LEU GLY GLY HIS SER ASP VAL VAL ALA GLY LEU SEQRES 17 H 380 VAL ALA THR SER ASP ASP LYS LEU ALA GLU ARG LEU ALA SEQRES 18 H 380 PHE ILE SER ASN SER THR GLY GLY ILE LEU GLY PRO GLN SEQRES 19 H 380 ASP SER TYR LEU LEU VAL ARG GLY ILE LYS THR LEU GLY SEQRES 20 H 380 LEU ARG MET GLU GLN ILE ASN ARG SER VAL ILE GLU ILE SEQRES 21 H 380 ILE LYS MET LEU GLN ALA HIS PRO ALA VAL GLN GLN VAL SEQRES 22 H 380 PHE HIS PRO SER ILE GLU SER HIS LEU ASN HIS ASP VAL SEQRES 23 H 380 HIS MET ALA GLN ALA ASP GLY HIS THR GLY VAL ILE ALA SEQRES 24 H 380 PHE GLU VAL LYS ASN THR GLU SER ALA LYS GLN LEU ILE SEQRES 25 H 380 LYS ALA THR SER TYR TYR THR LEU ALA GLU SER LEU GLY SEQRES 26 H 380 ALA VAL GLU SER LEU ILE SER VAL PRO ALA LEU MET THR SEQRES 27 H 380 HIS ALA SER ILE PRO ALA ASP ILE ARG ALA LYS GLU GLY SEQRES 28 H 380 ILE THR ASP GLY LEU VAL ARG ILE SER VAL GLY ILE GLU SEQRES 29 H 380 ASP THR GLU ASP LEU VAL ASP ASP LEU LYS GLN ALA LEU SEQRES 30 H 380 ASP THR LEU HET IK2 A 401 21 HET NA A 402 1 HET NA A 403 1 HET GOL A 404 6 HET GOL A 405 4 HET IK2 H 401 21 HET NA H 402 1 HET NA H 403 1 HET GOL H 404 5 HET GOL H 405 5 HETNAM IK2 4'-DEOXY-4'-ACETYLYAMINO-PYRIDOXAL-5'-PHOSPHATE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 IK2 2(C10 H15 N2 O8 P) FORMUL 4 NA 4(NA 1+) FORMUL 6 GOL 4(C3 H8 O3) FORMUL 13 HOH *87(H2 O) HELIX 1 AA1 ASN A 2 GLY A 10 1 9 HELIX 2 AA2 ASN A 50 GLU A 64 1 15 HELIX 3 AA3 SER A 74 MET A 84 1 11 HELIX 4 AA4 TYR A 99 VAL A 109 1 11 HELIX 5 AA5 PHE A 110 GLY A 114 5 5 HELIX 6 AA6 HIS A 124 ILE A 132 1 9 HELIX 7 AA7 ASP A 153 GLY A 165 1 13 HELIX 8 AA8 MET A 175 GLN A 180 1 6 HELIX 9 AA9 ASN A 181 GLY A 186 5 6 HELIX 10 AB1 ASP A 213 GLY A 228 1 16 HELIX 11 AB2 GLY A 232 THR A 245 1 14 HELIX 12 AB3 THR A 245 HIS A 267 1 23 HELIX 13 AB4 ASN A 283 ALA A 291 1 9 HELIX 14 AB5 ASN A 304 THR A 315 1 12 HELIX 15 AB6 PRO A 343 GLY A 351 1 9 HELIX 16 AB7 ASP A 365 THR A 379 1 15 HELIX 17 AB8 ASN H 2 GLY H 10 1 9 HELIX 18 AB9 ASN H 50 GLU H 64 1 15 HELIX 19 AC1 SER H 74 MET H 84 1 11 HELIX 20 AC2 TYR H 99 VAL H 109 1 11 HELIX 21 AC3 PHE H 110 GLY H 114 5 5 HELIX 22 AC4 THR H 125 ILE H 132 1 8 HELIX 23 AC5 ASP H 153 GLY H 165 1 13 HELIX 24 AC6 ASN H 181 GLY H 186 5 6 HELIX 25 AC7 ASP H 213 GLY H 228 1 16 HELIX 26 AC8 GLY H 232 THR H 245 1 14 HELIX 27 AC9 THR H 245 HIS H 267 1 23 HELIX 28 AD1 ASN H 283 ALA H 291 1 9 HELIX 29 AD2 ASN H 304 THR H 315 1 12 HELIX 30 AD3 PRO H 343 GLY H 351 1 9 HELIX 31 AD4 ASP H 365 ASP H 378 1 14 SHEET 1 AA1 7 HIS A 68 PHE A 72 0 SHEET 2 AA1 7 GLY A 207 THR A 211 -1 O GLY A 207 N PHE A 72 SHEET 3 AA1 7 ILE A 189 SER A 193 -1 N HIS A 192 O LEU A 208 SHEET 4 AA1 7 ILE A 167 ASP A 171 1 N SER A 168 O ILE A 189 SHEET 5 AA1 7 THR A 136 GLU A 142 1 N LEU A 139 O VAL A 169 SHEET 6 AA1 7 HIS A 91 ASN A 95 1 N HIS A 91 O LYS A 137 SHEET 7 AA1 7 GLU A 116 VAL A 120 1 O GLU A 116 N ILE A 92 SHEET 1 AA2 5 GLN A 272 PHE A 274 0 SHEET 2 AA2 5 VAL A 297 GLU A 301 -1 O ALA A 299 N PHE A 274 SHEET 3 AA2 5 LEU A 356 SER A 360 -1 O VAL A 357 N PHE A 300 SHEET 4 AA2 5 SER A 329 SER A 332 -1 N LEU A 330 O SER A 360 SHEET 5 AA2 5 TYR A 318 LEU A 320 1 N THR A 319 O SER A 329 SHEET 1 AA3 7 HIS H 68 PHE H 72 0 SHEET 2 AA3 7 GLY H 207 THR H 211 -1 O GLY H 207 N PHE H 72 SHEET 3 AA3 7 ILE H 189 SER H 193 -1 N VAL H 190 O ALA H 210 SHEET 4 AA3 7 ILE H 167 ASP H 171 1 N VAL H 170 O LEU H 191 SHEET 5 AA3 7 THR H 136 GLU H 142 1 N LEU H 139 O ILE H 167 SHEET 6 AA3 7 HIS H 91 ASN H 95 1 N HIS H 91 O LYS H 137 SHEET 7 AA3 7 GLU H 116 VAL H 120 1 O VAL H 120 N LEU H 94 SHEET 1 AA4 5 VAL H 273 PHE H 274 0 SHEET 2 AA4 5 VAL H 297 GLU H 301 -1 O ALA H 299 N PHE H 274 SHEET 3 AA4 5 LEU H 356 SER H 360 -1 O ILE H 359 N ILE H 298 SHEET 4 AA4 5 SER H 329 SER H 332 -1 N LEU H 330 O SER H 360 SHEET 5 AA4 5 TYR H 318 LEU H 320 1 N THR H 319 O ILE H 331 LINK O HIS A 9 NA NA A 403 1555 1555 2.60 LINK O GLY A 11 NA NA A 403 1555 1555 2.94 LINK O HIS H 9 NA NA H 403 1555 1555 2.79 LINK O GLY H 11 NA NA H 403 1555 1555 3.01 CISPEP 1 THR A 143 PRO A 144 0 -2.18 CISPEP 2 ASN A 146 PRO A 147 0 -1.65 CISPEP 3 THR H 143 PRO H 144 0 -3.23 CISPEP 4 ASN H 146 PRO H 147 0 1.33 CRYST1 104.354 104.354 287.362 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009583 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009583 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003480 0.00000