HEADER HYDROLASE/INHIBITOR 04-APR-21 7MDF TITLE FULL-LENGTH S95A CLBP BOUND TO N-ACYL-D-ASPARAGINE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI CFT073; SOURCE 3 ORGANISM_TAXID: 199310; SOURCE 4 STRAIN: CFT073; SOURCE 5 GENE: CLBP, D3C88_24740, E3O05_09835, E4T84_20050, ELT23_23600, SOURCE 6 ELT33_24260, ELT38_03835, ELY31_20780, EPS76_05775, EQO00_10370, SOURCE 7 EWK56_23765, FPI65_12330, HMV41_21265, HMW38_10385, IFB95_001925; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS COLIBACTIN PEPTIDASE, S12 PEPTIDASE, HYDROLASE, HYDROLASE-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.VELILLA,M.R.VOLPE,R.GAUDET REVDAT 6 30-OCT-24 7MDF 1 REMARK REVDAT 5 13-DEC-23 7MDF 1 COMPND HETNAM HETSYN REVDAT 4 25-OCT-23 7MDF 1 REMARK REVDAT 3 08-FEB-23 7MDF 1 JRNL REVDAT 2 09-NOV-22 7MDF 1 JRNL REVDAT 1 28-SEP-22 7MDF 0 JRNL AUTH J.A.VELILLA,M.R.VOLPE,G.E.KENNEY,R.M.WALSH JR.,E.P.BALSKUS, JRNL AUTH 2 R.GAUDET JRNL TITL STRUCTURAL BASIS OF COLIBACTIN ACTIVATION BY THE CLBP JRNL TITL 2 PEPTIDASE. JRNL REF NAT.CHEM.BIOL. V. 19 151 2023 JRNL REFN ESSN 1552-4469 JRNL PMID 36253550 JRNL DOI 10.1038/S41589-022-01142-Z REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7400 - 6.8100 0.99 2686 140 0.1799 0.1967 REMARK 3 2 6.8000 - 5.4100 1.00 2677 138 0.1818 0.2092 REMARK 3 3 5.4100 - 4.7200 1.00 2711 136 0.1573 0.1509 REMARK 3 4 4.7200 - 4.2900 1.00 2660 144 0.1358 0.1781 REMARK 3 5 4.2900 - 3.9800 1.00 2687 145 0.1341 0.1501 REMARK 3 6 3.9800 - 3.7500 1.00 2693 139 0.1449 0.2038 REMARK 3 7 3.7500 - 3.5600 1.00 2659 150 0.1457 0.1855 REMARK 3 8 3.5600 - 3.4100 1.00 2712 135 0.1468 0.1739 REMARK 3 9 3.4100 - 3.2800 1.00 2672 143 0.1600 0.1849 REMARK 3 10 3.2800 - 3.1600 1.00 2706 141 0.1667 0.1856 REMARK 3 11 3.1600 - 3.0600 1.00 2692 143 0.1711 0.2171 REMARK 3 12 3.0600 - 2.9800 1.00 2659 145 0.1854 0.1950 REMARK 3 13 2.9800 - 2.9000 1.00 2682 146 0.1888 0.2543 REMARK 3 14 2.9000 - 2.8300 1.00 2648 137 0.2189 0.2515 REMARK 3 15 2.8300 - 2.7600 1.00 2708 138 0.2403 0.2638 REMARK 3 16 2.7600 - 2.7000 1.00 2671 147 0.2510 0.2897 REMARK 3 17 2.7000 - 2.6500 1.00 2697 149 0.2569 0.2689 REMARK 3 18 2.6500 - 2.6000 1.00 2662 141 0.2644 0.3117 REMARK 3 19 2.6000 - 2.5500 1.00 2696 141 0.2667 0.2975 REMARK 3 20 2.5500 - 2.5100 1.00 2681 137 0.2788 0.3041 REMARK 3 21 2.5100 - 2.4700 1.00 2698 143 0.2920 0.3132 REMARK 3 22 2.4700 - 2.4300 1.00 2659 141 0.3010 0.3112 REMARK 3 23 2.4300 - 2.4000 1.00 2697 140 0.3071 0.3319 REMARK 3 24 2.4000 - 2.3600 1.00 2664 142 0.3224 0.3347 REMARK 3 25 2.3600 - 2.3300 0.99 2713 143 0.3415 0.3800 REMARK 3 26 2.3300 - 2.3000 1.00 2608 142 0.3397 0.3673 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3692 REMARK 3 ANGLE : 0.894 4999 REMARK 3 CHIRALITY : 0.051 568 REMARK 3 PLANARITY : 0.008 635 REMARK 3 DIHEDRAL : 15.708 1321 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 36:93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.258 33.914 49.162 REMARK 3 T TENSOR REMARK 3 T11: 0.1408 T22: 0.2544 REMARK 3 T33: 0.4285 T12: 0.0417 REMARK 3 T13: -0.0024 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 4.4137 L22: 5.8094 REMARK 3 L33: 5.5361 L12: -0.1465 REMARK 3 L13: 1.5052 L23: -1.8005 REMARK 3 S TENSOR REMARK 3 S11: 0.1005 S12: -0.1097 S13: 0.1061 REMARK 3 S21: 0.0274 S22: -0.0718 S23: -0.3740 REMARK 3 S31: -0.1104 S32: 0.4343 S33: 0.0957 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 94:295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.151 23.595 47.725 REMARK 3 T TENSOR REMARK 3 T11: 0.2353 T22: 0.2344 REMARK 3 T33: 0.4814 T12: -0.0047 REMARK 3 T13: 0.0325 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.7391 L22: 1.3518 REMARK 3 L33: 0.7319 L12: 0.0153 REMARK 3 L13: 0.1232 L23: -0.1580 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: -0.0669 S13: -0.3797 REMARK 3 S21: 0.0483 S22: 0.0135 S23: 0.1500 REMARK 3 S31: 0.1507 S32: -0.0744 S33: -0.0067 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 296:381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.674 40.317 45.323 REMARK 3 T TENSOR REMARK 3 T11: 0.1675 T22: 0.1691 REMARK 3 T33: 0.2781 T12: -0.0082 REMARK 3 T13: -0.0032 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 3.1467 L22: 1.8420 REMARK 3 L33: 1.0881 L12: -0.4418 REMARK 3 L13: -0.0767 L23: -0.3094 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: 0.0657 S13: 0.0563 REMARK 3 S21: -0.0598 S22: -0.0078 S23: -0.1572 REMARK 3 S31: -0.0311 S32: 0.0559 S33: 0.0499 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 382:414 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.103 40.917 86.572 REMARK 3 T TENSOR REMARK 3 T11: 0.9976 T22: 1.2206 REMARK 3 T33: 0.4736 T12: -0.3206 REMARK 3 T13: -0.1054 T23: -0.0544 REMARK 3 L TENSOR REMARK 3 L11: 0.5359 L22: 1.3667 REMARK 3 L33: 6.9800 L12: -0.7382 REMARK 3 L13: 0.0790 L23: 0.7633 REMARK 3 S TENSOR REMARK 3 S11: 0.3016 S12: -1.2239 S13: -0.0640 REMARK 3 S21: 1.0628 S22: -0.2720 S23: -0.3163 REMARK 3 S31: -0.5452 S32: 0.0962 S33: -0.0049 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 415:468 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.765 30.009 83.277 REMARK 3 T TENSOR REMARK 3 T11: 0.6341 T22: 1.0169 REMARK 3 T33: 0.5950 T12: -0.1482 REMARK 3 T13: 0.1019 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.7366 L22: 1.6317 REMARK 3 L33: 3.6333 L12: -0.4531 REMARK 3 L13: -0.0867 L23: 0.9863 REMARK 3 S TENSOR REMARK 3 S11: 0.0539 S12: -0.8770 S13: -0.1268 REMARK 3 S21: 0.7514 S22: -0.4010 S23: 0.3423 REMARK 3 S31: 0.2589 S32: -0.7435 S33: 0.0649 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 469:496 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.180 36.371 78.017 REMARK 3 T TENSOR REMARK 3 T11: 0.3953 T22: 0.7625 REMARK 3 T33: 0.3349 T12: -0.0112 REMARK 3 T13: -0.1243 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 1.2598 L22: 1.8828 REMARK 3 L33: 0.5661 L12: 0.1488 REMARK 3 L13: 0.8458 L23: 0.2340 REMARK 3 S TENSOR REMARK 3 S11: 0.1876 S12: -1.0417 S13: -0.1374 REMARK 3 S21: 0.5924 S22: 0.0619 S23: -0.1760 REMARK 3 S31: 0.0727 S32: -0.5082 S33: 0.0498 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000255872. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4-7.8 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92020 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20190806 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39268 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 17.20 REMARK 200 R MERGE (I) : 0.36200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 15.90 REMARK 200 R MERGE FOR SHELL (I) : 2.78100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.1-4122-000 REMARK 200 STARTING MODEL: 7MDE REMARK 200 REMARK 200 REMARK: SQUARE PLATES GROWN IN A SPONGE PHASE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT COMPOSITION: 1 PART 0.1M REMARK 280 IMIDAZOLE PH 7.8, 10% (V/V) PEG 400, 150 MM LI2SO4, 5.5 MM (4-(4- REMARK 280 BROMOPHENYL)BUTANOYL)-D-ASPARAGINE PLUS 3.5 PARTS 0.1M TRIS PH REMARK 280 7.4, 28%(V/V) PEG400, 100 MM LI2SO4, 1.2% (W/V) MYO-INOSITOL, REMARK 280 LIPIDIC CUBIC PHASE, TEMPERATURE 295K. PRECIPITANT COMPOSITION: REMARK 280 1 PART 0.1M IMIDAZOLE PH 7.8, 10% (V/V) PEG 400, 150 MM LI2SO4, REMARK 280 5.5 MM (4-(4-BROMOPHENYL)BUTANOYL)-D-ASPARAGINE PLUS 3.5 PARTS REMARK 280 0.1M TRIS PH 7.4, 28%(V/V) PEG400, 100 MM LI2SO4, 1.2% (W/V) MYO- REMARK 280 INOSITOL, LIPIDIC CUBIC PHASE, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.34300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.34300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.36800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.34300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.34300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.36800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.34300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.34300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 91.36800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.34300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.34300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.36800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 96.68600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 989 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 31 REMARK 465 GLU A 32 REMARK 465 HIS A 33 REMARK 465 GLU A 34 REMARK 465 PRO A 35 REMARK 465 GLY A 419 REMARK 465 PRO A 420 REMARK 465 GLY A 421 REMARK 465 LYS A 422 REMARK 465 GLN A 423 REMARK 465 GLN A 424 REMARK 465 ARG A 425 REMARK 465 LEU A 426 REMARK 465 HIS A 497 REMARK 465 ASN A 498 REMARK 465 LYS A 499 REMARK 465 GLU A 500 REMARK 465 TRP A 501 REMARK 465 ASP A 502 REMARK 465 ASP A 503 REMARK 465 GLU A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 465 HIS A 508 REMARK 465 HIS A 509 REMARK 465 HIS A 510 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 36 CG1 CG2 CD1 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 VAL A 405 CG1 CG2 REMARK 470 VAL A 406 CG1 CG2 REMARK 470 PHE A 410 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 412 CG1 CG2 REMARK 470 TYR A 413 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 414 CG CD NE CZ NH1 NH2 REMARK 470 THR A 416 OG1 CG2 REMARK 470 HIS A 418 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 427 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 428 CG CD1 CD2 REMARK 470 ARG A 429 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 430 CG1 CG2 REMARK 470 ARG A 431 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 432 CG OD1 OD2 REMARK 470 TYR A 433 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 434 CG1 CG2 CD1 REMARK 470 ILE A 435 CG1 CG2 CD1 REMARK 470 THR A 486 OG1 CG2 REMARK 470 ILE A 491 CG1 CG2 CD1 REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 ARG A 493 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 494 CG1 CG2 CD1 REMARK 470 LEU A 495 CG CD1 CD2 REMARK 470 LEU A 496 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 199 O HOH A 801 1.97 REMARK 500 NH1 ARG A 69 O4 SO4 A 714 1.98 REMARK 500 OE1 GLU A 126 O HOH A 802 2.18 REMARK 500 O HOH A 842 O HOH A 1070 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 828 O HOH A 828 2565 1.88 REMARK 500 O HOH A 815 O HOH A 916 6455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 229 37.04 -96.20 REMARK 500 ASN A 234 2.04 80.74 REMARK 500 ALA A 261 -20.11 -147.87 REMARK 500 ASP A 300 36.00 -88.60 REMARK 500 ALA A 312 -146.07 -107.97 REMARK 500 HIS A 327 138.91 -173.54 REMARK 500 ASN A 333 12.02 -149.97 REMARK 500 THR A 416 -131.03 62.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR A 375 15.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1109 DISTANCE = 5.95 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 705 REMARK 610 2PE A 706 REMARK 610 2PE A 707 REMARK 610 AV0 A 708 REMARK 610 97N A 709 REMARK 610 97N A 710 REMARK 610 97N A 711 REMARK 610 97N A 712 REMARK 610 97N A 713 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7MDE RELATED DB: PDB REMARK 900 STRUCTURE OF FULL-LENGTH S95A APO REMARK 900 RELATED ID: 7UL6 RELATED DB: PDB REMARK 900 CRYOEM STRUCTURE OF FULL-LENGTH DIMERIC CLBP REMARK 900 RELATED ID: 7MDC RELATED DB: PDB REMARK 900 STRUCTURE OF FULL-LENGTH WILDTYPE CLBP INHIBITED BY BORONIC ACID DBREF 7MDF A 31 504 UNP Q0P7K6 Q0P7K6_ECOLX 31 504 SEQADV 7MDF ALA A 95 UNP Q0P7K6 SER 95 ENGINEERED MUTATION SEQADV 7MDF MET A 454 UNP Q0P7K6 LEU 454 ENGINEERED MUTATION SEQADV 7MDF MET A 478 UNP Q0P7K6 ILE 478 ENGINEERED MUTATION SEQADV 7MDF HIS A 505 UNP Q0P7K6 EXPRESSION TAG SEQADV 7MDF HIS A 506 UNP Q0P7K6 EXPRESSION TAG SEQADV 7MDF HIS A 507 UNP Q0P7K6 EXPRESSION TAG SEQADV 7MDF HIS A 508 UNP Q0P7K6 EXPRESSION TAG SEQADV 7MDF HIS A 509 UNP Q0P7K6 EXPRESSION TAG SEQADV 7MDF HIS A 510 UNP Q0P7K6 EXPRESSION TAG SEQRES 1 A 480 GLN GLU HIS GLU PRO ILE GLY ALA GLN ASP GLU ARG LEU SEQRES 2 A 480 SER THR LEU ILE HIS GLN ARG MET GLN GLU ALA LYS VAL SEQRES 3 A 480 PRO ALA LEU SER VAL SER VAL THR ILE LYS GLY VAL ARG SEQRES 4 A 480 GLN ARG PHE VAL TYR GLY VAL ALA ASP VAL ALA SER GLN SEQRES 5 A 480 LYS ALA ASN THR LEU ASP THR VAL TYR GLU LEU GLY ALA SEQRES 6 A 480 MET SER LYS ALA PHE THR GLY LEU VAL VAL GLN ILE LEU SEQRES 7 A 480 ILE GLN GLU GLY ARG LEU ARG GLN GLY ASP ASP ILE ILE SEQRES 8 A 480 THR TYR LEU PRO GLU MET ARG LEU ASN TYR GLN GLY LYS SEQRES 9 A 480 PRO ALA SER LEU THR VAL ALA ASP PHE LEU TYR HIS THR SEQRES 10 A 480 SER GLY LEU PRO PHE SER THR LEU ALA ARG LEU GLU ASN SEQRES 11 A 480 PRO MET PRO GLY SER ALA VAL ALA GLN GLN LEU ARG ASN SEQRES 12 A 480 GLU ASN LEU LEU PHE ALA PRO GLY ALA LYS PHE SER TYR SEQRES 13 A 480 ALA SER ALA ASN TYR ASP VAL LEU GLY ALA VAL ILE GLU SEQRES 14 A 480 ASN VAL THR GLY LYS THR PHE THR GLU VAL ILE ALA GLU SEQRES 15 A 480 ARG LEU THR GLN PRO LEU GLY MET SER ALA THR VAL ALA SEQRES 16 A 480 VAL LYS GLY ASP GLU ILE ILE VAL ASN LYS ALA SER GLY SEQRES 17 A 480 TYR LYS LEU GLY PHE GLY LYS PRO VAL LEU PHE HIS ALA SEQRES 18 A 480 PRO LEU ALA ARG ASN HIS VAL PRO ALA ALA TYR ILE HIS SEQRES 19 A 480 SER THR LEU PRO ASP MET GLU ILE TRP ILE ASP ALA TRP SEQRES 20 A 480 LEU HIS ARG LYS ALA LEU PRO ALA THR LEU ARG GLU ALA SEQRES 21 A 480 MET SER ASN SER TRP ARG GLY ASN SER ASP VAL PRO LEU SEQRES 22 A 480 ALA ALA ASP ASN ARG ILE LEU TYR ALA SER GLY TRP PHE SEQRES 23 A 480 ILE ASP GLN ASN GLN GLY PRO TYR ILE SER HIS GLY GLY SEQRES 24 A 480 GLN ASN PRO ASN PHE SER SER CYS ILE ALA LEU ARG PRO SEQRES 25 A 480 ASP GLN GLN ILE GLY ILE VAL ALA LEU ALA ASN MET ASN SEQRES 26 A 480 SER ASN LEU ILE LEU GLN LEU CYS ALA ASP ILE ASP ASN SEQRES 27 A 480 TYR LEU ARG ILE GLY LYS TYR ALA ASP GLY ALA GLY ASP SEQRES 28 A 480 ALA ILE THR ALA THR ASP THR LEU PHE VAL TYR LEU THR SEQRES 29 A 480 LEU LEU LEU CYS PHE TRP GLY ALA VAL VAL VAL VAL ARG SEQRES 30 A 480 GLY ALA PHE ARG VAL TYR ARG ALA THR ALA HIS GLY PRO SEQRES 31 A 480 GLY LYS GLN GLN ARG LEU ARG LEU ARG VAL ARG ASP TYR SEQRES 32 A 480 ILE ILE ALA LEU ALA VAL PRO GLY LEU VAL ALA ALA MET SEQRES 33 A 480 LEU TYR VAL ALA PRO GLY ILE MET SER PRO GLY LEU ASP SEQRES 34 A 480 TRP ARG PHE ILE LEU VAL TRP GLY PRO SER SER VAL LEU SEQRES 35 A 480 ALA ILE PRO PHE GLY MET ILE LEU LEU ALA PHE VAL LEU SEQRES 36 A 480 THR LEU ASN HIS GLN ILE LYS ARG ILE LEU LEU HIS ASN SEQRES 37 A 480 LYS GLU TRP ASP ASP GLU HIS HIS HIS HIS HIS HIS HET DMS A 701 4 HET DMS A 702 4 HET Z9A A 703 27 HET Z9G A 704 21 HET 2PE A 705 7 HET 2PE A 706 14 HET 2PE A 707 11 HET AV0 A 708 32 HET 97N A 709 17 HET 97N A 710 18 HET 97N A 711 17 HET 97N A 712 11 HET 97N A 713 4 HET SO4 A 714 5 HET CL A 715 1 HET CL A 716 1 HET CL A 717 1 HETNAM DMS DIMETHYL SULFOXIDE HETNAM Z9A METHYL N~2~-[4-(4-BROMOPHENYL)BUTANOYL]-D-ASPARAGINYL- HETNAM 2 Z9A L-ALANINATE HETNAM Z9G N~2~-[4-(4-BROMOPHENYL)BUTANOYL]-D-ASPARAGINE HETNAM 2PE NONAETHYLENE GLYCOL HETNAM AV0 LAURYL MALTOSE NEOPENTYL GLYCOL HETNAM 97N (2S)-2,3-DIHYDROXYPROPYL (9Z)-HEXADEC-9-ENOATE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN AV0 2,2-DIDECYLPROPANE-1,3-BIS-B-D-MALTOPYRANOSIDE; 2- HETSYN 2 AV0 DECYL-2-{[(4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D- HETSYN 3 AV0 GLUCOPYRANOSYL)OXY]METHYL}DODECYL4-O-ALPHA-D- HETSYN 4 AV0 GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE FORMUL 2 DMS 2(C2 H6 O S) FORMUL 4 Z9A C18 H24 BR N3 O5 FORMUL 5 Z9G C14 H17 BR N2 O4 FORMUL 6 2PE 3(C18 H38 O10) FORMUL 9 AV0 C47 H88 O22 FORMUL 10 97N 5(C19 H36 O4) FORMUL 15 SO4 O4 S 2- FORMUL 16 CL 3(CL 1-) FORMUL 19 HOH *309(H2 O) HELIX 1 AA1 ASP A 40 LYS A 55 1 16 HELIX 2 AA2 GLY A 94 MET A 96 5 3 HELIX 3 AA3 SER A 97 GLU A 111 1 15 HELIX 4 AA4 ASP A 119 TYR A 123 5 5 HELIX 5 AA5 THR A 139 TYR A 145 1 7 HELIX 6 AA6 SER A 153 ASN A 160 1 8 HELIX 7 AA7 ALA A 166 ARG A 172 1 7 HELIX 8 AA8 SER A 188 GLY A 203 1 16 HELIX 9 AA9 THR A 205 LEU A 214 1 10 HELIX 10 AB1 LEU A 214 GLY A 219 1 6 HELIX 11 AB2 ALA A 254 ASN A 256 5 3 HELIX 12 AB3 HIS A 257 TYR A 262 1 6 HELIX 13 AB4 THR A 266 HIS A 279 1 14 HELIX 14 AB5 PRO A 284 TRP A 295 1 12 HELIX 15 AB6 PRO A 342 GLN A 344 5 3 HELIX 16 AB7 SER A 356 GLY A 373 1 18 HELIX 17 AB8 ASP A 381 ALA A 415 1 35 HELIX 18 AB9 LEU A 428 SER A 455 1 28 HELIX 19 AC1 ASP A 459 GLY A 467 1 9 HELIX 20 AC2 PRO A 468 VAL A 471 5 4 HELIX 21 AC3 LEU A 472 LYS A 492 1 21 SHEET 1 AA1 8 LYS A 83 ALA A 84 0 SHEET 2 AA1 8 VAL A 68 ASP A 78 -1 N ASP A 78 O LYS A 83 SHEET 3 AA1 8 ALA A 58 ILE A 65 -1 N LEU A 59 O TYR A 74 SHEET 4 AA1 8 ILE A 346 ALA A 352 -1 O LEU A 351 N SER A 60 SHEET 5 AA1 8 SER A 335 ARG A 341 -1 N ALA A 339 O ILE A 348 SHEET 6 AA1 8 TYR A 324 GLN A 330 -1 N ILE A 325 O LEU A 340 SHEET 7 AA1 8 PHE A 316 ASP A 318 -1 N PHE A 316 O SER A 326 SHEET 8 AA1 8 LEU A 310 TYR A 311 -1 N LEU A 310 O ILE A 317 SHEET 1 AA2 3 TYR A 91 GLU A 92 0 SHEET 2 AA2 3 ILE A 263 SER A 265 -1 O SER A 265 N TYR A 91 SHEET 3 AA2 3 VAL A 224 ALA A 225 -1 N VAL A 224 O HIS A 264 SHEET 1 AA3 3 LYS A 134 PRO A 135 0 SHEET 2 AA3 3 LEU A 129 TYR A 131 -1 N TYR A 131 O LYS A 134 SHEET 3 AA3 3 GLU A 174 ASN A 175 1 O GLU A 174 N ASN A 130 SHEET 1 AA4 2 TYR A 239 GLY A 242 0 SHEET 2 AA4 2 LYS A 245 LEU A 248 -1 O LYS A 245 N GLY A 242 SSBOND 1 CYS A 337 CYS A 363 1555 1555 2.05 CISPEP 1 GLY A 322 PRO A 323 0 4.07 CRYST1 96.686 96.686 182.736 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005472 0.00000