data_7MEJ # _entry.id 7MEJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.347 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7MEJ pdb_00007mej 10.2210/pdb7mej/pdb WWPDB D_1000256071 ? ? EMDB EMD-23790 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-23788 'other EM volume' EMDB . EMD-23782 'other EM volume' EMDB 'CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb36' EMD-23790 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7MEJ _pdbx_database_status.recvd_initial_deposition_date 2021-04-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huang, W.' 1 0000-0003-2097-8148 'Taylor, D.J.' 2 0000-0001-9932-1856 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 4676 _citation.page_last ? _citation.title 'Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-021-24963-3 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sun, D.' 1 ? primary 'Sang, Z.' 2 ? primary 'Kim, Y.J.' 3 ? primary 'Xiang, Y.' 4 ? primary 'Cohen, T.' 5 ? primary 'Belford, A.K.' 6 ? primary 'Huet, A.' 7 ? primary 'Conway, J.F.' 8 ? primary 'Sun, J.' 9 ? primary 'Taylor, D.J.' 10 ? primary 'Schneidman-Duhovny, D.' 11 ? primary 'Zhang, C.' 12 ? primary 'Huang, W.' 13 ? primary 'Shi, Y.' 14 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7MEJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nanobody Nb21' 12593.007 1 ? ? ? ? 2 polymer man 'Spike protein S1' 21776.381 1 ? ? ? ? 3 polymer man 'Nanobody Nb36' 13484.716 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QVQLVESGGGLVQAGGSLRLSCAVSGLGAHRVGWFRRAPGKEREFVAAIGANGGNTNYLDSVKGRFTISRDNAKNTIYLQ MNSLKPQDTAVYYCAARDIETAEYTYWGQGTQVTVSS ; ;QVQLVESGGGLVQAGGSLRLSCAVSGLGAHRVGWFRRAPGKEREFVAAIGANGGNTNYLDSVKGRFTISRDNAKNTIYLQ MNSLKPQDTAVYYCAARDIETAEYTYWGQGTQVTVSS ; A ? 2 'polypeptide(L)' no no ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG ; ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG ; R ? 3 'polypeptide(L)' no no ;VQLVESGGGLVQAGGSLTLTCAASGRTFSSETMDMGWFRQAPGKEREFVAADSWNDGSTYYADSVKGRFTISRDSAKNTL YLQMNSLKPEDTAVYYCAAETYSIYEKDDSWGYWGQGTQVTVS ; ;VQLVESGGGLVQAGGSLTLTCAASGRTFSSETMDMGWFRQAPGKEREFVAADSWNDGSTYYADSVKGRFTISRDSAKNTL YLQMNSLKPEDTAVYYCAAETYSIYEKDDSWGYWGQGTQVTVS ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 VAL n 1 6 GLU n 1 7 SER n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 GLN n 1 14 ALA n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 LEU n 1 19 ARG n 1 20 LEU n 1 21 SER n 1 22 CYS n 1 23 ALA n 1 24 VAL n 1 25 SER n 1 26 GLY n 1 27 LEU n 1 28 GLY n 1 29 ALA n 1 30 HIS n 1 31 ARG n 1 32 VAL n 1 33 GLY n 1 34 TRP n 1 35 PHE n 1 36 ARG n 1 37 ARG n 1 38 ALA n 1 39 PRO n 1 40 GLY n 1 41 LYS n 1 42 GLU n 1 43 ARG n 1 44 GLU n 1 45 PHE n 1 46 VAL n 1 47 ALA n 1 48 ALA n 1 49 ILE n 1 50 GLY n 1 51 ALA n 1 52 ASN n 1 53 GLY n 1 54 GLY n 1 55 ASN n 1 56 THR n 1 57 ASN n 1 58 TYR n 1 59 LEU n 1 60 ASP n 1 61 SER n 1 62 VAL n 1 63 LYS n 1 64 GLY n 1 65 ARG n 1 66 PHE n 1 67 THR n 1 68 ILE n 1 69 SER n 1 70 ARG n 1 71 ASP n 1 72 ASN n 1 73 ALA n 1 74 LYS n 1 75 ASN n 1 76 THR n 1 77 ILE n 1 78 TYR n 1 79 LEU n 1 80 GLN n 1 81 MET n 1 82 ASN n 1 83 SER n 1 84 LEU n 1 85 LYS n 1 86 PRO n 1 87 GLN n 1 88 ASP n 1 89 THR n 1 90 ALA n 1 91 VAL n 1 92 TYR n 1 93 TYR n 1 94 CYS n 1 95 ALA n 1 96 ALA n 1 97 ARG n 1 98 ASP n 1 99 ILE n 1 100 GLU n 1 101 THR n 1 102 ALA n 1 103 GLU n 1 104 TYR n 1 105 THR n 1 106 TYR n 1 107 TRP n 1 108 GLY n 1 109 GLN n 1 110 GLY n 1 111 THR n 1 112 GLN n 1 113 VAL n 1 114 THR n 1 115 VAL n 1 116 SER n 1 117 SER n 2 1 THR n 2 2 ASN n 2 3 LEU n 2 4 CYS n 2 5 PRO n 2 6 PHE n 2 7 GLY n 2 8 GLU n 2 9 VAL n 2 10 PHE n 2 11 ASN n 2 12 ALA n 2 13 THR n 2 14 ARG n 2 15 PHE n 2 16 ALA n 2 17 SER n 2 18 VAL n 2 19 TYR n 2 20 ALA n 2 21 TRP n 2 22 ASN n 2 23 ARG n 2 24 LYS n 2 25 ARG n 2 26 ILE n 2 27 SER n 2 28 ASN n 2 29 CYS n 2 30 VAL n 2 31 ALA n 2 32 ASP n 2 33 TYR n 2 34 SER n 2 35 VAL n 2 36 LEU n 2 37 TYR n 2 38 ASN n 2 39 SER n 2 40 ALA n 2 41 SER n 2 42 PHE n 2 43 SER n 2 44 THR n 2 45 PHE n 2 46 LYS n 2 47 CYS n 2 48 TYR n 2 49 GLY n 2 50 VAL n 2 51 SER n 2 52 PRO n 2 53 THR n 2 54 LYS n 2 55 LEU n 2 56 ASN n 2 57 ASP n 2 58 LEU n 2 59 CYS n 2 60 PHE n 2 61 THR n 2 62 ASN n 2 63 VAL n 2 64 TYR n 2 65 ALA n 2 66 ASP n 2 67 SER n 2 68 PHE n 2 69 VAL n 2 70 ILE n 2 71 ARG n 2 72 GLY n 2 73 ASP n 2 74 GLU n 2 75 VAL n 2 76 ARG n 2 77 GLN n 2 78 ILE n 2 79 ALA n 2 80 PRO n 2 81 GLY n 2 82 GLN n 2 83 THR n 2 84 GLY n 2 85 LYS n 2 86 ILE n 2 87 ALA n 2 88 ASP n 2 89 TYR n 2 90 ASN n 2 91 TYR n 2 92 LYS n 2 93 LEU n 2 94 PRO n 2 95 ASP n 2 96 ASP n 2 97 PHE n 2 98 THR n 2 99 GLY n 2 100 CYS n 2 101 VAL n 2 102 ILE n 2 103 ALA n 2 104 TRP n 2 105 ASN n 2 106 SER n 2 107 ASN n 2 108 ASN n 2 109 LEU n 2 110 ASP n 2 111 SER n 2 112 LYS n 2 113 VAL n 2 114 GLY n 2 115 GLY n 2 116 ASN n 2 117 TYR n 2 118 ASN n 2 119 TYR n 2 120 LEU n 2 121 TYR n 2 122 ARG n 2 123 LEU n 2 124 PHE n 2 125 ARG n 2 126 LYS n 2 127 SER n 2 128 ASN n 2 129 LEU n 2 130 LYS n 2 131 PRO n 2 132 PHE n 2 133 GLU n 2 134 ARG n 2 135 ASP n 2 136 ILE n 2 137 SER n 2 138 THR n 2 139 GLU n 2 140 ILE n 2 141 TYR n 2 142 GLN n 2 143 ALA n 2 144 GLY n 2 145 SER n 2 146 THR n 2 147 PRO n 2 148 CYS n 2 149 ASN n 2 150 GLY n 2 151 VAL n 2 152 GLU n 2 153 GLY n 2 154 PHE n 2 155 ASN n 2 156 CYS n 2 157 TYR n 2 158 PHE n 2 159 PRO n 2 160 LEU n 2 161 GLN n 2 162 SER n 2 163 TYR n 2 164 GLY n 2 165 PHE n 2 166 GLN n 2 167 PRO n 2 168 THR n 2 169 ASN n 2 170 GLY n 2 171 VAL n 2 172 GLY n 2 173 TYR n 2 174 GLN n 2 175 PRO n 2 176 TYR n 2 177 ARG n 2 178 VAL n 2 179 VAL n 2 180 VAL n 2 181 LEU n 2 182 SER n 2 183 PHE n 2 184 GLU n 2 185 LEU n 2 186 LEU n 2 187 HIS n 2 188 ALA n 2 189 PRO n 2 190 ALA n 2 191 THR n 2 192 VAL n 2 193 CYS n 2 194 GLY n 3 1 VAL n 3 2 GLN n 3 3 LEU n 3 4 VAL n 3 5 GLU n 3 6 SER n 3 7 GLY n 3 8 GLY n 3 9 GLY n 3 10 LEU n 3 11 VAL n 3 12 GLN n 3 13 ALA n 3 14 GLY n 3 15 GLY n 3 16 SER n 3 17 LEU n 3 18 THR n 3 19 LEU n 3 20 THR n 3 21 CYS n 3 22 ALA n 3 23 ALA n 3 24 SER n 3 25 GLY n 3 26 ARG n 3 27 THR n 3 28 PHE n 3 29 SER n 3 30 SER n 3 31 GLU n 3 32 THR n 3 33 MET n 3 34 ASP n 3 35 MET n 3 36 GLY n 3 37 TRP n 3 38 PHE n 3 39 ARG n 3 40 GLN n 3 41 ALA n 3 42 PRO n 3 43 GLY n 3 44 LYS n 3 45 GLU n 3 46 ARG n 3 47 GLU n 3 48 PHE n 3 49 VAL n 3 50 ALA n 3 51 ALA n 3 52 ASP n 3 53 SER n 3 54 TRP n 3 55 ASN n 3 56 ASP n 3 57 GLY n 3 58 SER n 3 59 THR n 3 60 TYR n 3 61 TYR n 3 62 ALA n 3 63 ASP n 3 64 SER n 3 65 VAL n 3 66 LYS n 3 67 GLY n 3 68 ARG n 3 69 PHE n 3 70 THR n 3 71 ILE n 3 72 SER n 3 73 ARG n 3 74 ASP n 3 75 SER n 3 76 ALA n 3 77 LYS n 3 78 ASN n 3 79 THR n 3 80 LEU n 3 81 TYR n 3 82 LEU n 3 83 GLN n 3 84 MET n 3 85 ASN n 3 86 SER n 3 87 LEU n 3 88 LYS n 3 89 PRO n 3 90 GLU n 3 91 ASP n 3 92 THR n 3 93 ALA n 3 94 VAL n 3 95 TYR n 3 96 TYR n 3 97 CYS n 3 98 ALA n 3 99 ALA n 3 100 GLU n 3 101 THR n 3 102 TYR n 3 103 SER n 3 104 ILE n 3 105 TYR n 3 106 GLU n 3 107 LYS n 3 108 ASP n 3 109 ASP n 3 110 SER n 3 111 TRP n 3 112 GLY n 3 113 TYR n 3 114 TRP n 3 115 GLY n 3 116 GLN n 3 117 GLY n 3 118 THR n 3 119 GLN n 3 120 VAL n 3 121 THR n 3 122 VAL n 3 123 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 117 Llama ? ? ? ? ? ? ? ? 'Lama glama' 9844 ? ? ? ? ? ? ? ? ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; 866768 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 194 '2019-nCoV, SARS-CoV-2' ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 123 Llama ? ? ? ? ? ? ? ? 'Lama glama' 9844 ? ? ? ? ? ? ? ? ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; 866768 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7MEJ 7MEJ ? 1 ? 1 2 UNP SPIKE_SARS2 P0DTC2 ? 2 ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG ; 333 3 PDB 7MEJ 7MEJ ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7MEJ A 1 ? 117 ? 7MEJ 1 ? 117 ? 1 117 2 2 7MEJ R 1 ? 194 ? P0DTC2 333 ? 526 ? 333 526 3 3 7MEJ B 1 ? 123 ? 7MEJ 2 ? 112 ? 2 112 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7MEJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7MEJ _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 3441 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.540 ? 4675 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 2.457 ? 486 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.088 ? 496 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 613 ? f_plane_restr ? ? # _struct.entry_id 7MEJ _struct.title 'CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb36' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7MEJ _struct_keywords.text 'SARS-CoV-2 Receptor binding domain nanobody, VIRAL PROTEIN, VIRAL PROTEIN-Immune System complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/Immune System' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 CYS B 4 ? VAL B 9 ? CYS R 336 VAL R 341 5 ? 6 HELX_P HELX_P2 AA2 SER B 34 ? SER B 39 ? SER R 366 SER R 371 1 ? 6 HELX_P HELX_P3 AA3 ARG B 71 ? ILE B 78 ? ARG R 403 ILE R 410 5 ? 8 HELX_P HELX_P4 AA4 LEU C 10 ? GLY C 14 ? LEU B 11 GLY B 15 5 ? 5 HELX_P HELX_P5 AA5 SER C 75 ? THR C 79 ? SER B 73 THR B 77 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 22 A CYS 94 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf2 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 29 SG ? ? R CYS 336 R CYS 361 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? B CYS 47 SG ? ? ? 1_555 B CYS 100 SG ? ? R CYS 379 R CYS 432 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf4 disulf ? ? B CYS 59 SG ? ? ? 1_555 B CYS 193 SG ? ? R CYS 391 R CYS 525 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf5 disulf ? ? B CYS 148 SG ? ? ? 1_555 B CYS 156 SG ? ? R CYS 480 R CYS 488 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf6 disulf ? ? C CYS 21 SG ? ? ? 1_555 C CYS 97 SG ? ? B CYS 22 B CYS 92 1_555 ? ? ? ? ? ? ? 2.033 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 4 ? AA4 ? 2 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 4 ? VAL A 5 ? LEU A 4 VAL A 5 AA1 2 ALA A 23 ? VAL A 24 ? ALA A 23 VAL A 24 AA2 1 GLU A 44 ? ILE A 49 ? GLU A 44 ILE A 49 AA2 2 VAL A 32 ? ARG A 36 ? VAL A 32 ARG A 36 AA2 3 TYR A 92 ? ALA A 95 ? TYR A 92 ALA A 95 AA3 1 THR B 44 ? TYR B 48 ? THR R 376 TYR R 380 AA3 2 GLY B 99 ? ASN B 105 ? GLY R 431 ASN R 437 AA3 3 TYR B 176 ? GLU B 184 ? TYR R 508 GLU R 516 AA3 4 ASN B 62 ? ILE B 70 ? ASN R 394 ILE R 402 AA4 1 LEU B 120 ? TYR B 121 ? LEU R 452 TYR R 453 AA4 2 GLN B 161 ? SER B 162 ? GLN R 493 SER R 494 AA5 1 VAL C 4 ? GLU C 5 ? VAL B 5 GLU B 6 AA5 2 GLN C 119 ? VAL C 120 ? GLN B 108 VAL B 109 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 5 ? N VAL A 5 O ALA A 23 ? O ALA A 23 AA2 1 2 O GLU A 44 ? O GLU A 44 N ARG A 36 ? N ARG A 36 AA2 2 3 N GLY A 33 ? N GLY A 33 O ALA A 95 ? O ALA A 95 AA3 1 2 N LYS B 46 ? N LYS R 378 O VAL B 101 ? O VAL R 433 AA3 2 3 N CYS B 100 ? N CYS R 432 O LEU B 181 ? O LEU R 513 AA3 3 4 O GLU B 184 ? O GLU R 516 N ASN B 62 ? N ASN R 394 AA4 1 2 N TYR B 121 ? N TYR R 453 O GLN B 161 ? O GLN R 493 AA5 1 2 N GLU C 5 ? N GLU B 6 O GLN C 119 ? O GLN B 108 # _atom_sites.entry_id 7MEJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 HIS 30 30 30 HIS HIS A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 TRP 34 34 34 TRP TRP A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 TRP 107 107 107 TRP TRP A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 SER 117 117 117 SER SER A . n B 2 1 THR 1 333 333 THR THR R . n B 2 2 ASN 2 334 334 ASN ASN R . n B 2 3 LEU 3 335 335 LEU LEU R . n B 2 4 CYS 4 336 336 CYS CYS R . n B 2 5 PRO 5 337 337 PRO PRO R . n B 2 6 PHE 6 338 338 PHE PHE R . n B 2 7 GLY 7 339 339 GLY GLY R . n B 2 8 GLU 8 340 340 GLU GLU R . n B 2 9 VAL 9 341 341 VAL VAL R . n B 2 10 PHE 10 342 342 PHE PHE R . n B 2 11 ASN 11 343 343 ASN ASN R . n B 2 12 ALA 12 344 344 ALA ALA R . n B 2 13 THR 13 345 345 THR THR R . n B 2 14 ARG 14 346 346 ARG ARG R . n B 2 15 PHE 15 347 347 PHE PHE R . n B 2 16 ALA 16 348 348 ALA ALA R . n B 2 17 SER 17 349 349 SER SER R . n B 2 18 VAL 18 350 350 VAL VAL R . n B 2 19 TYR 19 351 351 TYR TYR R . n B 2 20 ALA 20 352 352 ALA ALA R . n B 2 21 TRP 21 353 353 TRP TRP R . n B 2 22 ASN 22 354 354 ASN ASN R . n B 2 23 ARG 23 355 355 ARG ARG R . n B 2 24 LYS 24 356 356 LYS LYS R . n B 2 25 ARG 25 357 357 ARG ARG R . n B 2 26 ILE 26 358 358 ILE ILE R . n B 2 27 SER 27 359 359 SER SER R . n B 2 28 ASN 28 360 360 ASN ASN R . n B 2 29 CYS 29 361 361 CYS CYS R . n B 2 30 VAL 30 362 362 VAL VAL R . n B 2 31 ALA 31 363 363 ALA ALA R . n B 2 32 ASP 32 364 364 ASP ASP R . n B 2 33 TYR 33 365 365 TYR TYR R . n B 2 34 SER 34 366 366 SER SER R . n B 2 35 VAL 35 367 367 VAL VAL R . n B 2 36 LEU 36 368 368 LEU LEU R . n B 2 37 TYR 37 369 369 TYR TYR R . n B 2 38 ASN 38 370 370 ASN ASN R . n B 2 39 SER 39 371 371 SER SER R . n B 2 40 ALA 40 372 372 ALA ALA R . n B 2 41 SER 41 373 373 SER SER R . n B 2 42 PHE 42 374 374 PHE PHE R . n B 2 43 SER 43 375 375 SER SER R . n B 2 44 THR 44 376 376 THR THR R . n B 2 45 PHE 45 377 377 PHE PHE R . n B 2 46 LYS 46 378 378 LYS LYS R . n B 2 47 CYS 47 379 379 CYS CYS R . n B 2 48 TYR 48 380 380 TYR TYR R . n B 2 49 GLY 49 381 381 GLY GLY R . n B 2 50 VAL 50 382 382 VAL VAL R . n B 2 51 SER 51 383 383 SER SER R . n B 2 52 PRO 52 384 384 PRO PRO R . n B 2 53 THR 53 385 385 THR THR R . n B 2 54 LYS 54 386 386 LYS LYS R . n B 2 55 LEU 55 387 387 LEU LEU R . n B 2 56 ASN 56 388 388 ASN ASN R . n B 2 57 ASP 57 389 389 ASP ASP R . n B 2 58 LEU 58 390 390 LEU LEU R . n B 2 59 CYS 59 391 391 CYS CYS R . n B 2 60 PHE 60 392 392 PHE PHE R . n B 2 61 THR 61 393 393 THR THR R . n B 2 62 ASN 62 394 394 ASN ASN R . n B 2 63 VAL 63 395 395 VAL VAL R . n B 2 64 TYR 64 396 396 TYR TYR R . n B 2 65 ALA 65 397 397 ALA ALA R . n B 2 66 ASP 66 398 398 ASP ASP R . n B 2 67 SER 67 399 399 SER SER R . n B 2 68 PHE 68 400 400 PHE PHE R . n B 2 69 VAL 69 401 401 VAL VAL R . n B 2 70 ILE 70 402 402 ILE ILE R . n B 2 71 ARG 71 403 403 ARG ARG R . n B 2 72 GLY 72 404 404 GLY GLY R . n B 2 73 ASP 73 405 405 ASP ASP R . n B 2 74 GLU 74 406 406 GLU GLU R . n B 2 75 VAL 75 407 407 VAL VAL R . n B 2 76 ARG 76 408 408 ARG ARG R . n B 2 77 GLN 77 409 409 GLN GLN R . n B 2 78 ILE 78 410 410 ILE ILE R . n B 2 79 ALA 79 411 411 ALA ALA R . n B 2 80 PRO 80 412 412 PRO PRO R . n B 2 81 GLY 81 413 413 GLY GLY R . n B 2 82 GLN 82 414 414 GLN GLN R . n B 2 83 THR 83 415 415 THR THR R . n B 2 84 GLY 84 416 416 GLY GLY R . n B 2 85 LYS 85 417 417 LYS LYS R . n B 2 86 ILE 86 418 418 ILE ILE R . n B 2 87 ALA 87 419 419 ALA ALA R . n B 2 88 ASP 88 420 420 ASP ASP R . n B 2 89 TYR 89 421 421 TYR TYR R . n B 2 90 ASN 90 422 422 ASN ASN R . n B 2 91 TYR 91 423 423 TYR TYR R . n B 2 92 LYS 92 424 424 LYS LYS R . n B 2 93 LEU 93 425 425 LEU LEU R . n B 2 94 PRO 94 426 426 PRO PRO R . n B 2 95 ASP 95 427 427 ASP ASP R . n B 2 96 ASP 96 428 428 ASP ASP R . n B 2 97 PHE 97 429 429 PHE PHE R . n B 2 98 THR 98 430 430 THR THR R . n B 2 99 GLY 99 431 431 GLY GLY R . n B 2 100 CYS 100 432 432 CYS CYS R . n B 2 101 VAL 101 433 433 VAL VAL R . n B 2 102 ILE 102 434 434 ILE ILE R . n B 2 103 ALA 103 435 435 ALA ALA R . n B 2 104 TRP 104 436 436 TRP TRP R . n B 2 105 ASN 105 437 437 ASN ASN R . n B 2 106 SER 106 438 438 SER SER R . n B 2 107 ASN 107 439 439 ASN ASN R . n B 2 108 ASN 108 440 440 ASN ASN R . n B 2 109 LEU 109 441 441 LEU LEU R . n B 2 110 ASP 110 442 442 ASP ASP R . n B 2 111 SER 111 443 443 SER SER R . n B 2 112 LYS 112 444 444 LYS LYS R . n B 2 113 VAL 113 445 445 VAL VAL R . n B 2 114 GLY 114 446 446 GLY GLY R . n B 2 115 GLY 115 447 447 GLY GLY R . n B 2 116 ASN 116 448 448 ASN ASN R . n B 2 117 TYR 117 449 449 TYR TYR R . n B 2 118 ASN 118 450 450 ASN ASN R . n B 2 119 TYR 119 451 451 TYR TYR R . n B 2 120 LEU 120 452 452 LEU LEU R . n B 2 121 TYR 121 453 453 TYR TYR R . n B 2 122 ARG 122 454 454 ARG ARG R . n B 2 123 LEU 123 455 455 LEU LEU R . n B 2 124 PHE 124 456 456 PHE PHE R . n B 2 125 ARG 125 457 457 ARG ARG R . n B 2 126 LYS 126 458 458 LYS LYS R . n B 2 127 SER 127 459 459 SER SER R . n B 2 128 ASN 128 460 460 ASN ASN R . n B 2 129 LEU 129 461 461 LEU LEU R . n B 2 130 LYS 130 462 462 LYS LYS R . n B 2 131 PRO 131 463 463 PRO PRO R . n B 2 132 PHE 132 464 464 PHE PHE R . n B 2 133 GLU 133 465 465 GLU GLU R . n B 2 134 ARG 134 466 466 ARG ARG R . n B 2 135 ASP 135 467 467 ASP ASP R . n B 2 136 ILE 136 468 468 ILE ILE R . n B 2 137 SER 137 469 469 SER SER R . n B 2 138 THR 138 470 470 THR THR R . n B 2 139 GLU 139 471 471 GLU GLU R . n B 2 140 ILE 140 472 472 ILE ILE R . n B 2 141 TYR 141 473 473 TYR TYR R . n B 2 142 GLN 142 474 474 GLN GLN R . n B 2 143 ALA 143 475 475 ALA ALA R . n B 2 144 GLY 144 476 476 GLY GLY R . n B 2 145 SER 145 477 477 SER SER R . n B 2 146 THR 146 478 478 THR THR R . n B 2 147 PRO 147 479 479 PRO PRO R . n B 2 148 CYS 148 480 480 CYS CYS R . n B 2 149 ASN 149 481 481 ASN ASN R . n B 2 150 GLY 150 482 482 GLY GLY R . n B 2 151 VAL 151 483 483 VAL VAL R . n B 2 152 GLU 152 484 484 GLU GLU R . n B 2 153 GLY 153 485 485 GLY GLY R . n B 2 154 PHE 154 486 486 PHE PHE R . n B 2 155 ASN 155 487 487 ASN ASN R . n B 2 156 CYS 156 488 488 CYS CYS R . n B 2 157 TYR 157 489 489 TYR TYR R . n B 2 158 PHE 158 490 490 PHE PHE R . n B 2 159 PRO 159 491 491 PRO PRO R . n B 2 160 LEU 160 492 492 LEU LEU R . n B 2 161 GLN 161 493 493 GLN GLN R . n B 2 162 SER 162 494 494 SER SER R . n B 2 163 TYR 163 495 495 TYR TYR R . n B 2 164 GLY 164 496 496 GLY GLY R . n B 2 165 PHE 165 497 497 PHE PHE R . n B 2 166 GLN 166 498 498 GLN GLN R . n B 2 167 PRO 167 499 499 PRO PRO R . n B 2 168 THR 168 500 500 THR THR R . n B 2 169 ASN 169 501 501 ASN ASN R . n B 2 170 GLY 170 502 502 GLY GLY R . n B 2 171 VAL 171 503 503 VAL VAL R . n B 2 172 GLY 172 504 504 GLY GLY R . n B 2 173 TYR 173 505 505 TYR TYR R . n B 2 174 GLN 174 506 506 GLN GLN R . n B 2 175 PRO 175 507 507 PRO PRO R . n B 2 176 TYR 176 508 508 TYR TYR R . n B 2 177 ARG 177 509 509 ARG ARG R . n B 2 178 VAL 178 510 510 VAL VAL R . n B 2 179 VAL 179 511 511 VAL VAL R . n B 2 180 VAL 180 512 512 VAL VAL R . n B 2 181 LEU 181 513 513 LEU LEU R . n B 2 182 SER 182 514 514 SER SER R . n B 2 183 PHE 183 515 515 PHE PHE R . n B 2 184 GLU 184 516 516 GLU GLU R . n B 2 185 LEU 185 517 517 LEU LEU R . n B 2 186 LEU 186 518 518 LEU LEU R . n B 2 187 HIS 187 519 519 HIS HIS R . n B 2 188 ALA 188 520 520 ALA ALA R . n B 2 189 PRO 189 521 521 PRO PRO R . n B 2 190 ALA 190 522 522 ALA ALA R . n B 2 191 THR 191 523 523 THR THR R . n B 2 192 VAL 192 524 524 VAL VAL R . n B 2 193 CYS 193 525 525 CYS CYS R . n B 2 194 GLY 194 526 526 GLY GLY R . n C 3 1 VAL 1 2 2 VAL VAL B . n C 3 2 GLN 2 3 3 GLN GLN B . n C 3 3 LEU 3 4 4 LEU LEU B . n C 3 4 VAL 4 5 5 VAL VAL B . n C 3 5 GLU 5 6 6 GLU GLU B . n C 3 6 SER 6 7 7 SER SER B . n C 3 7 GLY 7 8 8 GLY GLY B . n C 3 8 GLY 8 9 9 GLY GLY B . n C 3 9 GLY 9 10 10 GLY GLY B . n C 3 10 LEU 10 11 11 LEU LEU B . n C 3 11 VAL 11 12 12 VAL VAL B . n C 3 12 GLN 12 13 13 GLN GLN B . n C 3 13 ALA 13 14 14 ALA ALA B . n C 3 14 GLY 14 15 15 GLY GLY B . n C 3 15 GLY 15 16 16 GLY GLY B . n C 3 16 SER 16 17 17 SER SER B . n C 3 17 LEU 17 18 18 LEU LEU B . n C 3 18 THR 18 19 19 THR THR B . n C 3 19 LEU 19 20 20 LEU LEU B . n C 3 20 THR 20 21 21 THR THR B . n C 3 21 CYS 21 22 22 CYS CYS B . n C 3 22 ALA 22 23 23 ALA ALA B . n C 3 23 ALA 23 24 24 ALA ALA B . n C 3 24 SER 24 25 25 SER SER B . n C 3 25 GLY 25 26 26 GLY GLY B . n C 3 26 ARG 26 27 27 ARG ARG B . n C 3 27 THR 27 28 28 THR THR B . n C 3 28 PHE 28 29 29 PHE PHE B . n C 3 29 SER 29 30 30 SER SER B . n C 3 30 SER 30 31 31 SER SER B . n C 3 31 GLU 31 31 31 GLU GLU B A n C 3 32 THR 32 31 31 THR THR B B n C 3 33 MET 33 32 32 MET MET B . n C 3 34 ASP 34 33 33 ASP ASP B . n C 3 35 MET 35 34 34 MET MET B . n C 3 36 GLY 36 35 35 GLY GLY B . n C 3 37 TRP 37 36 36 TRP TRP B . n C 3 38 PHE 38 37 37 PHE PHE B . n C 3 39 ARG 39 38 38 ARG ARG B . n C 3 40 GLN 40 39 39 GLN GLN B . n C 3 41 ALA 41 40 40 ALA ALA B . n C 3 42 PRO 42 41 41 PRO PRO B . n C 3 43 GLY 43 42 42 GLY GLY B . n C 3 44 LYS 44 43 43 LYS LYS B . n C 3 45 GLU 45 44 44 GLU GLU B . n C 3 46 ARG 46 45 45 ARG ARG B . n C 3 47 GLU 47 46 46 GLU GLU B . n C 3 48 PHE 48 47 47 PHE PHE B . n C 3 49 VAL 49 48 48 VAL VAL B . n C 3 50 ALA 50 49 49 ALA ALA B . n C 3 51 ALA 51 50 50 ALA ALA B . n C 3 52 ASP 52 51 51 ASP ASP B . n C 3 53 SER 53 52 52 SER SER B . n C 3 54 TRP 54 52 52 TRP TRP B A n C 3 55 ASN 55 53 53 ASN ASN B . n C 3 56 ASP 56 54 54 ASP ASP B . n C 3 57 GLY 57 55 55 GLY GLY B . n C 3 58 SER 58 56 56 SER SER B . n C 3 59 THR 59 57 57 THR THR B . n C 3 60 TYR 60 58 58 TYR TYR B . n C 3 61 TYR 61 59 59 TYR TYR B . n C 3 62 ALA 62 60 60 ALA ALA B . n C 3 63 ASP 63 61 61 ASP ASP B . n C 3 64 SER 64 62 62 SER SER B . n C 3 65 VAL 65 63 63 VAL VAL B . n C 3 66 LYS 66 64 64 LYS LYS B . n C 3 67 GLY 67 65 65 GLY GLY B . n C 3 68 ARG 68 66 66 ARG ARG B . n C 3 69 PHE 69 67 67 PHE PHE B . n C 3 70 THR 70 68 68 THR THR B . n C 3 71 ILE 71 69 69 ILE ILE B . n C 3 72 SER 72 70 70 SER SER B . n C 3 73 ARG 73 71 71 ARG ARG B . n C 3 74 ASP 74 72 72 ASP ASP B . n C 3 75 SER 75 73 73 SER SER B . n C 3 76 ALA 76 74 74 ALA ALA B . n C 3 77 LYS 77 75 75 LYS LYS B . n C 3 78 ASN 78 76 76 ASN ASN B . n C 3 79 THR 79 77 77 THR THR B . n C 3 80 LEU 80 78 78 LEU LEU B . n C 3 81 TYR 81 79 79 TYR TYR B . n C 3 82 LEU 82 80 80 LEU LEU B . n C 3 83 GLN 83 81 81 GLN GLN B . n C 3 84 MET 84 82 82 MET MET B . n C 3 85 ASN 85 82 82 ASN ASN B A n C 3 86 SER 86 82 82 SER SER B B n C 3 87 LEU 87 82 82 LEU LEU B C n C 3 88 LYS 88 83 83 LYS LYS B . n C 3 89 PRO 89 84 84 PRO PRO B . n C 3 90 GLU 90 85 85 GLU GLU B . n C 3 91 ASP 91 86 86 ASP ASP B . n C 3 92 THR 92 87 87 THR THR B . n C 3 93 ALA 93 88 88 ALA ALA B . n C 3 94 VAL 94 89 89 VAL VAL B . n C 3 95 TYR 95 90 90 TYR TYR B . n C 3 96 TYR 96 91 91 TYR TYR B . n C 3 97 CYS 97 92 92 CYS CYS B . n C 3 98 ALA 98 93 93 ALA ALA B . n C 3 99 ALA 99 94 94 ALA ALA B . n C 3 100 GLU 100 95 95 GLU GLU B . n C 3 101 THR 101 96 96 THR THR B . n C 3 102 TYR 102 97 97 TYR TYR B . n C 3 103 SER 103 98 98 SER SER B . n C 3 104 ILE 104 99 99 ILE ILE B . n C 3 105 TYR 105 100 100 TYR TYR B . n C 3 106 GLU 106 100 100 GLU GLU B A n C 3 107 LYS 107 100 100 LYS LYS B B n C 3 108 ASP 108 100 100 ASP ASP B C n C 3 109 ASP 109 100 100 ASP ASP B D n C 3 110 SER 110 100 100 SER SER B E n C 3 111 TRP 111 100 100 TRP TRP B F n C 3 112 GLY 112 101 101 GLY GLY B . n C 3 113 TYR 113 102 102 TYR TYR B . n C 3 114 TRP 114 103 103 TRP TRP B . n C 3 115 GLY 115 104 104 GLY GLY B . n C 3 116 GLN 116 105 105 GLN GLN B . n C 3 117 GLY 117 106 106 GLY GLY B . n C 3 118 THR 118 107 107 THR THR B . n C 3 119 GLN 119 108 108 GLN GLN B . n C 3 120 VAL 120 109 109 VAL VAL B . n C 3 121 THR 121 110 110 THR THR B . n C 3 122 VAL 122 111 111 VAL VAL B . n C 3 123 SER 123 112 112 SER SER B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2021-08-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19rc3_4024: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 7MEJ _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7MEJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 154955 _em_3d_reconstruction.resolution 3.55 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'CryoEM map of SARS-CoV-2 RBD in complex with Nb21 and Nb105' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7MEJ _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7MEJ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7MEJ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG1 B THR 68 ? ? O B MET 82 ? ? 2.05 2 1 NH2 A ARG 36 ? ? O A VAL 91 ? ? 2.08 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 R _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 379 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 R _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 379 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 R _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 379 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.21 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 9.01 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 25 ? ? -91.12 52.87 2 1 ALA A 29 ? ? -140.65 44.40 3 1 PRO A 39 ? ? -69.72 73.72 4 1 VAL A 46 ? ? -121.22 -62.33 5 1 MET A 81 ? ? 71.71 38.07 6 1 PRO A 86 ? ? -76.03 46.88 7 1 ASP A 98 ? ? -53.85 -9.50 8 1 GLU A 103 ? ? -132.77 -40.15 9 1 CYS R 361 ? ? -170.14 -179.67 10 1 PHE R 377 ? ? -161.36 115.67 11 1 LYS R 458 ? ? -132.75 -39.23 12 1 SER R 459 ? ? -176.63 -179.72 13 1 GLU R 465 ? ? -170.09 142.76 14 1 THR R 500 ? ? -98.10 37.07 15 1 SER B 30 ? ? -98.45 36.65 16 1 MET B 34 ? ? -170.22 -174.42 17 1 SER B 52 ? ? 70.84 -3.93 18 1 TRP B 52 A ? -166.58 -169.96 19 1 LYS B 75 ? ? 59.49 14.13 20 1 LEU B 82 C ? -78.85 -169.15 21 1 GLU B 85 ? ? 60.90 60.39 22 1 SER B 98 ? ? -173.69 147.49 23 1 TYR B 102 ? ? -140.98 26.71 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 11 ? CG ? A LEU 11 CG 2 1 Y 1 A LEU 11 ? CD1 ? A LEU 11 CD1 3 1 Y 1 A LEU 11 ? CD2 ? A LEU 11 CD2 4 1 Y 1 A GLN 13 ? CG ? A GLN 13 CG 5 1 Y 1 A GLN 13 ? CD ? A GLN 13 CD 6 1 Y 1 A GLN 13 ? OE1 ? A GLN 13 OE1 7 1 Y 1 A GLN 13 ? NE2 ? A GLN 13 NE2 8 1 Y 1 A LYS 41 ? CG ? A LYS 41 CG 9 1 Y 1 A LYS 41 ? CD ? A LYS 41 CD 10 1 Y 1 A LYS 41 ? CE ? A LYS 41 CE 11 1 Y 1 A LYS 41 ? NZ ? A LYS 41 NZ 12 1 Y 1 A GLU 42 ? CG ? A GLU 42 CG 13 1 Y 1 A GLU 42 ? CD ? A GLU 42 CD 14 1 Y 1 A GLU 42 ? OE1 ? A GLU 42 OE1 15 1 Y 1 A GLU 42 ? OE2 ? A GLU 42 OE2 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_embedding.id 1 _em_embedding.details ? _em_embedding.specimen_id 1 _em_embedding.material 'vitrified ice' # loop_ _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue ? ? 1 1 2697049 ? ? 'Severe acute respiratory syndrome coronavirus 2' ? ? ? ? 1 2 9844 ? ? 'Lama glama' ? ? # loop_ _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain ? 1 1 866768 ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; ? ? ? 1 2 9606 'Homo sapiens' ? ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60.4 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied YES _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #