HEADER PROTEIN BINDING 07-APR-21 7MEU TITLE A BIPHENYL INHIBITOR OF EIF4E TARGETING AN INTERNAL BINDING SITE TITLE 2 ENABLES THE DESIGN OF CELL-PERMEABLE PROTAC-DEGRADERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EIF-4E,EIF4E,EIF-4F 25 KDA SUBUNIT,MRNA CAP-BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF4E, EIF4EL1, EIF4F; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, EIF4E, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR E.PAPADOPOULOS REVDAT 3 18-OCT-23 7MEU 1 REMARK REVDAT 2 05-MAY-21 7MEU 1 JRNL REVDAT 1 28-APR-21 7MEU 0 JRNL AUTH P.D.FISCHER,E.PAPADOPOULOS,J.M.DEMPERSMIER,Z.F.WANG, JRNL AUTH 2 R.P.NOWAK,K.A.DONOVAN,J.KALABATHULA,C.GORGULLA, JRNL AUTH 3 P.P.M.JUNGHANNS,E.KABHA,N.DIMITRAKAKIS,O.I.PETROV, JRNL AUTH 4 C.MITSIADES,C.DUCHO,V.GELEV,E.S.FISCHER,G.WAGNER,H.ARTHANARI JRNL TITL A BIPHENYL INHIBITOR OF EIF4E TARGETING AN INTERNAL BINDING JRNL TITL 2 SITE ENABLES THE DESIGN OF CELL-PERMEABLE PROTAC-DEGRADERS. JRNL REF EUR.J.MED.CHEM. V. 219 13435 2021 JRNL REFN ISSN 0223-5234 JRNL PMID 33892272 JRNL DOI 10.1016/J.EJMECH.2021.113435 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 25417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.6500 - 4.6100 0.98 1750 149 0.1789 0.2000 REMARK 3 2 4.6100 - 3.6600 0.99 1723 148 0.1360 0.1681 REMARK 3 3 3.6600 - 3.2000 0.99 1712 146 0.1506 0.2220 REMARK 3 4 3.2000 - 2.9100 1.00 1742 149 0.1552 0.2334 REMARK 3 5 2.9100 - 2.7000 1.00 1729 148 0.1578 0.2191 REMARK 3 6 2.7000 - 2.5400 1.00 1724 146 0.1587 0.2218 REMARK 3 7 2.5400 - 2.4100 1.00 1709 146 0.1538 0.2382 REMARK 3 8 2.4100 - 2.3100 1.00 1730 148 0.1617 0.2259 REMARK 3 9 2.3100 - 2.2200 1.00 1727 148 0.1539 0.2296 REMARK 3 10 2.2200 - 2.1400 1.00 1704 145 0.1656 0.2230 REMARK 3 11 2.1400 - 2.0700 1.00 1731 148 0.1611 0.2225 REMARK 3 12 2.0700 - 2.0200 1.00 1727 148 0.1747 0.2629 REMARK 3 13 2.0200 - 1.9600 0.94 1616 138 0.2104 0.2740 REMARK 3 14 1.9600 - 1.9100 0.63 1093 93 0.2493 0.3214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.206 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.549 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 3312 REMARK 3 ANGLE : 2.012 4518 REMARK 3 CHIRALITY : 0.079 459 REMARK 3 PLANARITY : 0.013 568 REMARK 3 DIHEDRAL : 31.328 515 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MEU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25424 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 60.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.411 REMARK 200 R MERGE (I) : 0.05771 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TPW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000 10-20%, 100MM MES PH 6.5, 10% REMARK 280 IPN, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.68200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 26 REMARK 465 GLU A 27 REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 ASN A 30 REMARK 465 PRO A 31 REMARK 465 GLU A 32 REMARK 465 HIS A 33 REMARK 465 MET B 26 REMARK 465 GLU B 27 REMARK 465 VAL B 28 REMARK 465 ALA B 29 REMARK 465 ASN B 30 REMARK 465 PRO B 31 REMARK 465 GLU B 32 REMARK 465 HIS B 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS B 49 O HOH B 1101 1.25 REMARK 500 OD1 ASN B 118 H GLN B 121 1.30 REMARK 500 HZ2 LYS A 212 O HOH A 1101 1.42 REMARK 500 HH11 ARG B 181 O HOH B 1106 1.43 REMARK 500 HE ARG A 186 O HOH A 1108 1.54 REMARK 500 H ASN B 118 OE1 GLN B 121 1.58 REMARK 500 O HOH B 1101 O HOH B 1215 1.99 REMARK 500 O HOH B 1232 O HOH B 1236 1.99 REMARK 500 O HOH B 1116 O HOH B 1202 2.00 REMARK 500 O HOH B 1222 O HOH B 1242 2.00 REMARK 500 NZ LYS B 49 O HOH B 1101 2.05 REMARK 500 N TYR B 34 O HOH B 1102 2.06 REMARK 500 O HOH B 1176 O HOH B 1227 2.09 REMARK 500 OD1 ASN B 118 N GLN B 121 2.11 REMARK 500 O HOH B 1115 O HOH B 1176 2.12 REMARK 500 NH2 ARG A 123 OD1 ASP A 127 2.18 REMARK 500 O HOH A 1138 O HOH A 1167 2.18 REMARK 500 O HOH B 1220 O HOH B 1243 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG3 GLU A 140 HH12 ARG B 123 1455 1.33 REMARK 500 OD2 ASP B 144 HG SER B 209 1455 1.40 REMARK 500 O LEU A 60 HZ1 LYS A 192 2547 1.41 REMARK 500 O LEU A 60 HZ3 LYS A 192 2547 1.47 REMARK 500 O LEU A 60 NZ LYS A 192 2547 1.76 REMARK 500 NE2 GLN A 120 OE1 GLU A 174 1655 1.76 REMARK 500 OD2 ASP B 144 OG SER B 209 1455 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 36 CG LYS A 36 CD -0.604 REMARK 500 LYS A 36 CE LYS A 36 NZ -0.214 REMARK 500 GLN A 40 CB GLN A 40 CG 0.269 REMARK 500 GLN A 40 CB GLN A 40 CG 0.208 REMARK 500 GLN A 40 CG GLN A 40 CD 0.248 REMARK 500 GLN A 40 C ASN A 41 N 0.162 REMARK 500 ASN A 41 N ASN A 41 CA 0.126 REMARK 500 ARG B 123 NE ARG B 123 CZ -0.116 REMARK 500 ARG B 123 CZ ARG B 123 NH1 -0.183 REMARK 500 ARG B 123 CZ ARG B 123 NH2 -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 36 CD - CE - NZ ANGL. DEV. = 16.0 DEGREES REMARK 500 GLN A 40 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 GLN A 40 CA - CB - CG ANGL. DEV. = 23.0 DEGREES REMARK 500 GLN A 40 CB - CG - CD ANGL. DEV. = 17.7 DEGREES REMARK 500 ASN A 41 CB - CA - C ANGL. DEV. = -19.5 DEGREES REMARK 500 ASN A 41 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 LYS A 106 CD - CE - NZ ANGL. DEV. = 35.1 DEGREES REMARK 500 LYS A 192 CB - CG - CD ANGL. DEV. = -25.8 DEGREES REMARK 500 LYS A 192 CD - CE - NZ ANGL. DEV. = -36.8 DEGREES REMARK 500 LEU B 60 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG B 123 CB - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 ARG B 123 N - CA - CB ANGL. DEV. = 20.2 DEGREES REMARK 500 ARG B 123 CG - CD - NE ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG B 123 CD - NE - CZ ANGL. DEV. = 18.4 DEGREES REMARK 500 ARG B 123 NH1 - CZ - NH2 ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG B 123 NE - CZ - NH1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG B 123 NE - CZ - NH2 ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 40 -53.48 -6.16 REMARK 500 GLN A 40 -56.44 -4.78 REMARK 500 ASN A 50 82.12 -40.56 REMARK 500 LEU A 60 -177.42 -52.73 REMARK 500 ASP A 67 22.61 -144.11 REMARK 500 GLN A 121 152.56 -46.08 REMARK 500 ASP A 143 -128.67 57.64 REMARK 500 SER A 207 -51.14 -137.86 REMARK 500 SER B 64 147.22 -172.24 REMARK 500 ASP B 67 20.46 -143.52 REMARK 500 ASP B 143 -127.71 50.98 REMARK 500 LYS B 206 104.63 -59.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 123 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1228 DISTANCE = 6.12 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MGP A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Z5D A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MGP B 1000 DBREF 7MEU A 27 217 UNP P06730 IF4E_HUMAN 27 217 DBREF 7MEU B 27 217 UNP P06730 IF4E_HUMAN 27 217 SEQADV 7MEU MET A 26 UNP P06730 INITIATING METHIONINE SEQADV 7MEU MET B 26 UNP P06730 INITIATING METHIONINE SEQRES 1 A 192 MET GLU VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO SEQRES 2 A 192 LEU GLN ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP SEQRES 3 A 192 LYS SER LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER SEQRES 4 A 192 LYS PHE ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN SEQRES 5 A 192 HIS ILE GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP SEQRES 6 A 192 TYR SER LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU SEQRES 7 A 192 ASP GLU LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR SEQRES 8 A 192 LEU ASN LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE SEQRES 9 A 192 TRP LEU GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE SEQRES 10 A 192 ASP ASP TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN SEQRES 11 A 192 VAL ARG ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR SEQRES 12 A 192 GLU CYS GLU ASN ARG GLU ALA VAL THR HIS ILE GLY ARG SEQRES 13 A 192 VAL TYR LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL SEQRES 14 A 192 ILE GLY TYR GLN SER HIS ALA ASP THR ALA THR LYS SER SEQRES 15 A 192 GLY SER THR THR LYS ASN ARG PHE VAL VAL SEQRES 1 B 192 MET GLU VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO SEQRES 2 B 192 LEU GLN ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP SEQRES 3 B 192 LYS SER LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER SEQRES 4 B 192 LYS PHE ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN SEQRES 5 B 192 HIS ILE GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP SEQRES 6 B 192 TYR SER LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU SEQRES 7 B 192 ASP GLU LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR SEQRES 8 B 192 LEU ASN LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE SEQRES 9 B 192 TRP LEU GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE SEQRES 10 B 192 ASP ASP TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN SEQRES 11 B 192 VAL ARG ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR SEQRES 12 B 192 GLU CYS GLU ASN ARG GLU ALA VAL THR HIS ILE GLY ARG SEQRES 13 B 192 VAL TYR LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL SEQRES 14 B 192 ILE GLY TYR GLN SER HIS ALA ASP THR ALA THR LYS SER SEQRES 15 B 192 GLY SER THR THR LYS ASN ARG PHE VAL VAL HET MGP A1000 33 HET Z5D A1001 33 HET MGP B1000 33 HETNAM MGP 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE HETNAM Z5D (2E)-2-{2-[4-([1,1'-BIPHENYL]-4-YL)-1,3-THIAZOL-2- HETNAM 2 Z5D YL]HYDRAZINYLIDENE}-3-(2-NITROPHENYL)PROPANOIC ACID FORMUL 3 MGP 2(C11 H19 N5 O14 P3 1+) FORMUL 4 Z5D C24 H18 N4 O4 S FORMUL 6 HOH *276(H2 O) HELIX 1 AA1 THR A 55 LEU A 60 5 6 HELIX 2 AA2 VAL A 69 SER A 83 1 15 HELIX 3 AA3 ASP A 104 ARG A 109 1 6 HELIX 4 AA4 ARG A 122 GLY A 139 1 18 HELIX 5 AA5 PHE A 142 ASP A 147 5 6 HELIX 6 AA6 ASN A 172 LEU A 187 1 16 HELIX 7 AA7 HIS A 200 THR A 205 1 6 HELIX 8 AA8 THR B 55 ALA B 58 5 4 HELIX 9 AA9 VAL B 69 ASN B 77 1 9 HELIX 10 AB1 LEU B 81 LEU B 85 5 5 HELIX 11 AB2 ASN B 118 GLY B 139 1 22 HELIX 12 AB3 PHE B 142 ASP B 147 5 6 HELIX 13 AB4 ASN B 172 GLY B 188 1 17 HELIX 14 AB5 HIS B 200 THR B 205 1 6 SHEET 1 AA1 8 LEU A 62 THR A 68 0 SHEET 2 AA1 8 PRO A 38 LYS A 49 -1 N TRP A 43 O PHE A 66 SHEET 3 AA1 8 CYS A 89 LYS A 95 -1 O SER A 92 N TRP A 46 SHEET 4 AA1 8 VAL A 149 ASN A 155 -1 O CYS A 150 N LYS A 95 SHEET 5 AA1 8 LYS A 162 THR A 167 -1 O TRP A 166 N CYS A 150 SHEET 6 AA1 8 GLY A 111 THR A 116 -1 N ILE A 115 O ILE A 163 SHEET 7 AA1 8 GLY A 196 SER A 199 -1 O GLN A 198 N ARG A 112 SHEET 8 AA1 8 PHE A 215 VAL A 216 -1 O PHE A 215 N TYR A 197 SHEET 1 AA2 8 LEU B 60 THR B 68 0 SHEET 2 AA2 8 PRO B 38 LYS B 49 -1 N LEU B 39 O ASP B 67 SHEET 3 AA2 8 CYS B 89 LYS B 95 -1 O SER B 92 N TRP B 46 SHEET 4 AA2 8 VAL B 149 VAL B 156 -1 O VAL B 154 N TYR B 91 SHEET 5 AA2 8 ASP B 161 THR B 167 -1 O TRP B 166 N CYS B 150 SHEET 6 AA2 8 GLY B 111 LEU B 117 -1 N ILE B 115 O ILE B 163 SHEET 7 AA2 8 GLY B 196 SER B 199 -1 O GLY B 196 N LEU B 114 SHEET 8 AA2 8 PHE B 215 VAL B 216 -1 O PHE B 215 N TYR B 197 SITE 1 AC1 17 TRP A 56 MET A 101 TRP A 102 GLU A 103 SITE 2 AC1 17 ARG A 157 LYS A 162 LYS A 206 HOH A1111 SITE 3 AC1 17 HOH A1126 HOH A1127 HOH A1129 HOH A1150 SITE 4 AC1 17 HOH A1161 HOH A1167 HOH A1187 THR B 55 SITE 5 AC1 17 GLN B 57 SITE 1 AC2 14 LEU A 45 TYR A 76 ILE A 79 GLN A 80 SITE 2 AC2 14 SER A 83 ASN A 84 LEU A 85 TYR A 91 SITE 3 AC2 14 ARG A 123 ASP A 127 TRP A 130 LEU A 134 SITE 4 AC2 14 HOH A1123 SER B 124 SITE 1 AC3 17 THR A 55 GLU A 103 TRP B 56 MET B 101 SITE 2 AC3 17 TRP B 102 GLU B 103 ARG B 157 LYS B 162 SITE 3 AC3 17 LYS B 206 HOH B1117 HOH B1135 HOH B1140 SITE 4 AC3 17 HOH B1171 HOH B1190 HOH B1196 HOH B1198 SITE 5 AC3 17 HOH B1208 CRYST1 38.812 73.364 61.866 90.00 101.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025765 0.000000 0.005176 0.00000 SCALE2 0.000000 0.013631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016487 0.00000