HEADER HYDROLASE/INHIBITOR 09-APR-21 7MFH TITLE CRYSTAL STRUCTURE OF BIO-32546 BOUND MOUSE AUTOTAXIN CAVEAT 7MFH RESIDUES VAL A 68 AND PRO A 70 THAT ARE NEXT TO EACH OTHER CAVEAT 2 7MFH IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE CAVEAT 3 7MFH BETWEEN C AND N IS 6.01 A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY COMPND 3 MEMBER 2; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: E-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD; COMPND 6 EC: 3.1.4.39; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ENPP2, NPPS2, PDNP2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA AFF. FRUGIPERDA 2 RZ-2014; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1491790 KEYWDS HYDROLASE INHIBITOR, AUTOTAXIN, HYDROLASE, HYDROLASE-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.V.CHODAPARAMBIL REVDAT 2 18-OCT-23 7MFH 1 REMARK REVDAT 1 13-APR-22 7MFH 0 JRNL AUTH B.MA,L.ZHANG,L.SUN,Z.XIN,G.KUMARAVEL,D.MARCOTTE, JRNL AUTH 2 J.V.CHODAPARAMBIL,Q.WANG,A.WEHR,J.JING,V.S.HONG,T.WANG, JRNL AUTH 3 C.HUANG,Z.SHAO,S.MI JRNL TITL DISCOVERY OF POTENT SELECTIVE NONZINC BINDING AUTOTAXIN JRNL TITL 2 INHIBITOR BIO-32546. JRNL REF ACS MED.CHEM.LETT. V. 12 1124 2021 JRNL REFN ISSN 1948-5875 JRNL PMID 34267882 JRNL DOI 10.1021/ACSMEDCHEMLETT.1C00211 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 40460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1300 - 5.5400 0.98 2731 144 0.1955 0.2524 REMARK 3 2 5.5400 - 4.4000 0.99 2765 146 0.1740 0.2162 REMARK 3 3 4.4000 - 3.8400 0.98 2761 145 0.1731 0.2142 REMARK 3 4 3.8400 - 3.4900 0.98 2765 146 0.2040 0.2554 REMARK 3 5 3.4900 - 3.2400 0.98 2725 143 0.2019 0.2617 REMARK 3 6 3.2400 - 3.0500 0.98 2765 146 0.2368 0.3002 REMARK 3 7 3.0500 - 2.9000 0.98 2760 145 0.2473 0.2955 REMARK 3 8 2.9000 - 2.7700 0.98 2723 143 0.2388 0.2883 REMARK 3 9 2.7700 - 2.6600 0.98 2776 147 0.2467 0.2843 REMARK 3 10 2.6600 - 2.5700 0.98 2733 144 0.2647 0.3837 REMARK 3 11 2.5700 - 2.4900 0.98 2728 143 0.2910 0.3631 REMARK 3 12 2.4900 - 2.4200 0.97 2760 145 0.3192 0.3585 REMARK 3 13 2.4200 - 2.3600 0.98 2688 142 0.3279 0.3986 REMARK 3 14 2.3600 - 2.3000 0.97 2756 145 0.3559 0.4061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.358 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.895 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6605 REMARK 3 ANGLE : 0.606 8944 REMARK 3 CHIRALITY : 0.044 967 REMARK 3 PLANARITY : 0.005 1142 REMARK 3 DIHEDRAL : 7.648 973 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 646 THROUGH 859 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8677 44.3101 -41.6233 REMARK 3 T TENSOR REMARK 3 T11: 0.3699 T22: 0.3390 REMARK 3 T33: 0.5042 T12: -0.0321 REMARK 3 T13: 0.1154 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.8992 L22: 2.5345 REMARK 3 L33: 1.8046 L12: -0.1107 REMARK 3 L13: -0.2020 L23: -0.0377 REMARK 3 S TENSOR REMARK 3 S11: 0.0726 S12: 0.1418 S13: 0.1883 REMARK 3 S21: -0.2119 S22: -0.1084 S23: -0.3348 REMARK 3 S31: -0.2620 S32: 0.1501 S33: 0.0481 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.8348 17.6610 -1.2655 REMARK 3 T TENSOR REMARK 3 T11: 0.4211 T22: 0.6414 REMARK 3 T33: 0.8640 T12: -0.0201 REMARK 3 T13: 0.1337 T23: -0.1301 REMARK 3 L TENSOR REMARK 3 L11: 2.8279 L22: 3.2964 REMARK 3 L33: 2.6311 L12: -0.3443 REMARK 3 L13: -0.2169 L23: -1.9050 REMARK 3 S TENSOR REMARK 3 S11: 0.0991 S12: 0.2321 S13: -0.3096 REMARK 3 S21: 0.2094 S22: 0.1819 S23: 0.8867 REMARK 3 S31: 0.2375 S32: -0.7278 S33: -0.3097 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3429 23.8428 -5.1200 REMARK 3 T TENSOR REMARK 3 T11: 0.3858 T22: 0.3772 REMARK 3 T33: 0.5124 T12: -0.0642 REMARK 3 T13: 0.0519 T23: -0.0775 REMARK 3 L TENSOR REMARK 3 L11: 0.6931 L22: 2.1774 REMARK 3 L33: 2.5185 L12: -0.0748 REMARK 3 L13: -0.1027 L23: -1.6185 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: -0.1789 S13: -0.1060 REMARK 3 S21: 0.2823 S22: -0.1528 S23: -0.1541 REMARK 3 S31: -0.0523 S32: 0.1292 S33: 0.1770 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 281 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8919 41.2568 -12.6414 REMARK 3 T TENSOR REMARK 3 T11: 0.3600 T22: 0.3536 REMARK 3 T33: 0.4307 T12: -0.0435 REMARK 3 T13: 0.0385 T23: -0.0996 REMARK 3 L TENSOR REMARK 3 L11: 0.7230 L22: 3.8613 REMARK 3 L33: 1.8085 L12: 0.1745 REMARK 3 L13: -0.3323 L23: -1.6460 REMARK 3 S TENSOR REMARK 3 S11: 0.1415 S12: -0.1261 S13: 0.1664 REMARK 3 S21: 0.4477 S22: -0.0923 S23: 0.0431 REMARK 3 S31: -0.4728 S32: 0.0383 S33: -0.0600 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 484 THROUGH 645 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2578 30.3887 -38.5279 REMARK 3 T TENSOR REMARK 3 T11: 0.4389 T22: 0.3489 REMARK 3 T33: 0.6167 T12: 0.0400 REMARK 3 T13: 0.1202 T23: -0.0796 REMARK 3 L TENSOR REMARK 3 L11: 1.5389 L22: 1.0524 REMARK 3 L33: 3.7029 L12: 0.3748 REMARK 3 L13: -0.9295 L23: -1.0211 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: 0.1511 S13: -0.2493 REMARK 3 S21: -0.3583 S22: -0.2187 S23: -0.3410 REMARK 3 S31: 0.1566 S32: 0.3026 S33: 0.2324 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3NKM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM IODIDE, 0.1M SODIUM REMARK 280 IODIDE, 28% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 34 REMARK 465 GLU A 35 REMARK 465 TRP A 36 REMARK 465 ASP A 37 REMARK 465 GLU A 38 REMARK 465 GLY A 39 REMARK 465 PRO A 40 REMARK 465 PRO A 41 REMARK 465 THR A 42 REMARK 465 VAL A 43 REMARK 465 LEU A 44 REMARK 465 SER A 45 REMARK 465 ASP A 46 REMARK 465 SER A 47 REMARK 465 PRO A 48 REMARK 465 TRP A 49 REMARK 465 THR A 50 REMARK 465 LEU A 458 REMARK 465 ASP A 459 REMARK 465 VAL A 460 REMARK 465 TYR A 461 REMARK 465 LYS A 462 REMARK 465 LYS A 463 REMARK 465 PRO A 464 REMARK 465 SER A 465 REMARK 465 GLY A 466 REMARK 465 LYS A 467 REMARK 465 ASP A 573 REMARK 465 ASP A 574 REMARK 465 LYS A 575 REMARK 465 ASN A 576 REMARK 465 LYS A 577 REMARK 465 LEU A 578 REMARK 465 GLU A 579 REMARK 465 GLU A 580 REMARK 465 LEU A 581 REMARK 465 ASN A 582 REMARK 465 LYS A 583 REMARK 465 ARG A 584 REMARK 465 LEU A 585 REMARK 465 HIS A 586 REMARK 465 THR A 587 REMARK 465 LYS A 588 REMARK 465 GLY A 589 REMARK 465 SER A 590 REMARK 465 SER A 860 REMARK 465 GLU A 861 REMARK 465 ILE A 862 REMARK 465 SER A 863 REMARK 465 ARG A 864 REMARK 465 GLU A 865 REMARK 465 ASN A 866 REMARK 465 LEU A 867 REMARK 465 TYR A 868 REMARK 465 PHE A 869 REMARK 465 GLN A 870 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 51 CG OD1 ND2 REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 396 CG1 CG2 CD1 REMARK 470 LEU A 400 CG CD1 CD2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 GLU A 592 CG CD OE1 OE2 REMARK 470 TYR A 684 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 840 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 299 O2 EDO A 915 1.30 REMARK 500 NH1 ARG A 746 O2 EDO A 906 1.30 REMARK 500 CG2 THR A 264 O1 EDO A 917 1.37 REMARK 500 O HOH A 1066 O HOH A 1151 1.85 REMARK 500 O HOH A 1120 O HOH A 1165 1.85 REMARK 500 O PHE A 494 O HOH A 1001 1.89 REMARK 500 O HOH A 1157 O HOH A 1163 1.97 REMARK 500 O HOH A 1100 O HOH A 1167 1.99 REMARK 500 O HOH A 1104 O HOH A 1151 2.00 REMARK 500 O HOH A 1126 O HOH A 1155 2.00 REMARK 500 O HOH A 1129 O HOH A 1158 2.07 REMARK 500 NZ LYS A 104 O VAL A 136 2.07 REMARK 500 OE1 GLU A 504 O HOH A 1002 2.08 REMARK 500 OG1 THR A 841 O HOH A 1003 2.11 REMARK 500 O HOH A 1123 O HOH A 1124 2.14 REMARK 500 N ARG A 843 O HOH A 1003 2.16 REMARK 500 O PRO A 501 O HOH A 1004 2.17 REMARK 500 OE2 GLU A 504 O1 EDO A 914 2.17 REMARK 500 OE1 GLN A 66 O HOH A 1005 2.17 REMARK 500 CB THR A 264 O1 EDO A 917 2.17 REMARK 500 O HOH A 1117 O HOH A 1141 2.18 REMARK 500 O ILE A 392 O HOH A 1006 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 128 43.67 -141.46 REMARK 500 ALA A 435 -26.98 -145.18 REMARK 500 THR A 485 -168.57 -129.91 REMARK 500 TYR A 552 76.55 -110.47 REMARK 500 TYR A 858 19.14 57.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 912 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 311 OD1 REMARK 620 2 ASP A 311 OD2 58.1 REMARK 620 3 HIS A 315 NE2 90.0 92.8 REMARK 620 4 HIS A 474 NE2 86.2 143.9 92.6 REMARK 620 5 HOH A1156 O 163.1 108.8 102.0 104.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 904 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 739 OD1 REMARK 620 2 ASN A 741 OD1 71.9 REMARK 620 3 ASN A 743 OD1 78.6 75.4 REMARK 620 4 LEU A 745 O 92.9 155.5 83.0 REMARK 620 5 ASP A 747 OD1 99.4 97.6 173.0 103.8 REMARK 620 6 HOH A1012 O 161.3 89.5 95.4 104.0 84.5 REMARK 620 N 1 2 3 4 5 DBREF 7MFH A 34 862 UNP Q9R1E6 ENPP2_MOUSE 36 862 SEQADV 7MFH GLY A 56 UNP Q9R1E6 INSERTION SEQADV 7MFH SER A 57 UNP Q9R1E6 INSERTION SEQADV 7MFH A UNP Q9R1E6 GLY 69 DELETION SEQADV 7MFH A UNP Q9R1E6 LYS 571 DELETION SEQADV 7MFH A UNP Q9R1E6 VAL 572 DELETION SEQADV 7MFH A UNP Q9R1E6 GLU 573 DELETION SEQADV 7MFH A UNP Q9R1E6 PRO 574 DELETION SEQADV 7MFH SER A 863 UNP Q9R1E6 EXPRESSION TAG SEQADV 7MFH ARG A 864 UNP Q9R1E6 EXPRESSION TAG SEQADV 7MFH GLU A 865 UNP Q9R1E6 EXPRESSION TAG SEQADV 7MFH ASN A 866 UNP Q9R1E6 EXPRESSION TAG SEQADV 7MFH LEU A 867 UNP Q9R1E6 EXPRESSION TAG SEQADV 7MFH TYR A 868 UNP Q9R1E6 EXPRESSION TAG SEQADV 7MFH PHE A 869 UNP Q9R1E6 EXPRESSION TAG SEQADV 7MFH GLN A 870 UNP Q9R1E6 EXPRESSION TAG SEQRES 1 A 832 ALA GLU TRP ASP GLU GLY PRO PRO THR VAL LEU SER ASP SEQRES 2 A 832 SER PRO TRP THR ASN THR SER GLY SER GLY SER CYS LYS SEQRES 3 A 832 GLY ARG CYS PHE GLU LEU GLN GLU VAL PRO PRO ASP CYS SEQRES 4 A 832 ARG CYS ASP ASN LEU CYS LYS SER TYR SER SER CYS CYS SEQRES 5 A 832 HIS ASP PHE ASP GLU LEU CYS LEU LYS THR ALA ARG GLY SEQRES 6 A 832 TRP GLU CYS THR LYS ASP ARG CYS GLY GLU VAL ARG ASN SEQRES 7 A 832 GLU GLU ASN ALA CYS HIS CYS SER GLU ASP CYS LEU SER SEQRES 8 A 832 ARG GLY ASP CYS CYS THR ASN TYR GLN VAL VAL CYS LYS SEQRES 9 A 832 GLY GLU SER HIS TRP VAL ASP ASP ASP CYS GLU GLU ILE SEQRES 10 A 832 ARG VAL PRO GLU CYS PRO ALA GLY PHE VAL ARG PRO PRO SEQRES 11 A 832 LEU ILE ILE PHE SER VAL ASP GLY PHE ARG ALA SER TYR SEQRES 12 A 832 MET LYS LYS GLY SER LYS VAL MET PRO ASN ILE GLU LYS SEQRES 13 A 832 LEU ARG SER CYS GLY THR HIS ALA PRO TYR MET ARG PRO SEQRES 14 A 832 VAL TYR PRO THR LYS THR PHE PRO ASN LEU TYR THR LEU SEQRES 15 A 832 ALA THR GLY LEU TYR PRO GLU SER HIS GLY ILE VAL GLY SEQRES 16 A 832 ASN SER MET TYR ASP PRO VAL PHE ASP ALA THR PHE HIS SEQRES 17 A 832 LEU ARG GLY ARG GLU LYS PHE ASN HIS ARG TRP TRP GLY SEQRES 18 A 832 GLY GLN PRO LEU TRP ILE THR ALA THR LYS GLN GLY VAL SEQRES 19 A 832 ARG ALA GLY THR PHE PHE TRP SER VAL SER ILE PRO HIS SEQRES 20 A 832 GLU ARG ARG ILE LEU THR ILE LEU GLN TRP LEU SER LEU SEQRES 21 A 832 PRO ASP ASN GLU ARG PRO SER VAL TYR ALA PHE TYR SER SEQRES 22 A 832 GLU GLN PRO ASP PHE SER GLY HIS LYS TYR GLY PRO PHE SEQRES 23 A 832 GLY PRO GLU MET THR ASN PRO LEU ARG GLU ILE ASP LYS SEQRES 24 A 832 THR VAL GLY GLN LEU MET ASP GLY LEU LYS GLN LEU LYS SEQRES 25 A 832 LEU HIS ARG CYS VAL ASN VAL ILE PHE VAL GLY ASP HIS SEQRES 26 A 832 GLY MET GLU ASP VAL THR CYS ASP ARG THR GLU PHE LEU SEQRES 27 A 832 SER ASN TYR LEU THR ASN VAL ASP ASP ILE THR LEU VAL SEQRES 28 A 832 PRO GLY THR LEU GLY ARG ILE ARG PRO LYS ILE PRO ASN SEQRES 29 A 832 ASN LEU LYS TYR ASP PRO LYS ALA ILE ILE ALA ASN LEU SEQRES 30 A 832 THR CYS LYS LYS PRO ASP GLN HIS PHE LYS PRO TYR MET SEQRES 31 A 832 LYS GLN HIS LEU PRO LYS ARG LEU HIS TYR ALA ASN ASN SEQRES 32 A 832 ARG ARG ILE GLU ASP LEU HIS LEU LEU VAL GLU ARG ARG SEQRES 33 A 832 TRP HIS VAL ALA ARG LYS PRO LEU ASP VAL TYR LYS LYS SEQRES 34 A 832 PRO SER GLY LYS CYS PHE PHE GLN GLY ASP HIS GLY PHE SEQRES 35 A 832 ASP ASN LYS VAL ASN SER MET GLN THR VAL PHE VAL GLY SEQRES 36 A 832 TYR GLY PRO THR PHE LYS TYR ARG THR LYS VAL PRO PRO SEQRES 37 A 832 PHE GLU ASN ILE GLU LEU TYR ASN VAL MET CYS ASP LEU SEQRES 38 A 832 LEU GLY LEU LYS PRO ALA PRO ASN ASN GLY THR HIS GLY SEQRES 39 A 832 SER LEU ASN HIS LEU LEU ARG THR ASN THR PHE ARG PRO SEQRES 40 A 832 THR LEU PRO GLU GLU VAL SER ARG PRO ASN TYR PRO GLY SEQRES 41 A 832 ILE MET TYR LEU GLN SER ASP PHE ASP LEU GLY CYS THR SEQRES 42 A 832 CYS ASP ASP LYS ASN LYS LEU GLU GLU LEU ASN LYS ARG SEQRES 43 A 832 LEU HIS THR LYS GLY SER THR GLU GLU ARG HIS LEU LEU SEQRES 44 A 832 TYR GLY ARG PRO ALA VAL LEU TYR ARG THR SER TYR ASP SEQRES 45 A 832 ILE LEU TYR HIS THR ASP PHE GLU SER GLY TYR SER GLU SEQRES 46 A 832 ILE PHE LEU MET PRO LEU TRP THR SER TYR THR ILE SER SEQRES 47 A 832 LYS GLN ALA GLU VAL SER SER ILE PRO GLU HIS LEU THR SEQRES 48 A 832 ASN CYS VAL ARG PRO ASP VAL ARG VAL SER PRO GLY PHE SEQRES 49 A 832 SER GLN ASN CYS LEU ALA TYR LYS ASN ASP LYS GLN MET SEQRES 50 A 832 SER TYR GLY PHE LEU PHE PRO PRO TYR LEU SER SER SER SEQRES 51 A 832 PRO GLU ALA LYS TYR ASP ALA PHE LEU VAL THR ASN MET SEQRES 52 A 832 VAL PRO MET TYR PRO ALA PHE LYS ARG VAL TRP THR TYR SEQRES 53 A 832 PHE GLN ARG VAL LEU VAL LYS LYS TYR ALA SER GLU ARG SEQRES 54 A 832 ASN GLY VAL ASN VAL ILE SER GLY PRO ILE PHE ASP TYR SEQRES 55 A 832 ASN TYR ASN GLY LEU ARG ASP ILE GLU ASP GLU ILE LYS SEQRES 56 A 832 GLN TYR VAL GLU GLY SER SER ILE PRO VAL PRO THR HIS SEQRES 57 A 832 TYR TYR SER ILE ILE THR SER CYS LEU ASP PHE THR GLN SEQRES 58 A 832 PRO ALA ASP LYS CYS ASP GLY PRO LEU SER VAL SER SER SEQRES 59 A 832 PHE ILE LEU PRO HIS ARG PRO ASP ASN ASP GLU SER CYS SEQRES 60 A 832 ASN SER SER GLU ASP GLU SER LYS TRP VAL GLU GLU LEU SEQRES 61 A 832 MET LYS MET HIS THR ALA ARG VAL ARG ASP ILE GLU HIS SEQRES 62 A 832 LEU THR GLY LEU ASP PHE TYR ARG LYS THR SER ARG SER SEQRES 63 A 832 TYR SER GLU ILE LEU THR LEU LYS THR TYR LEU HIS THR SEQRES 64 A 832 TYR GLU SER GLU ILE SER ARG GLU ASN LEU TYR PHE GLN HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET NAG C 1 14 HET NAG C 2 14 HET ZF7 A 901 38 HET IOD A 902 1 HET EDO A 903 4 HET ZN A 904 1 HET EDO A 905 4 HET EDO A 906 4 HET EDO A 907 4 HET EDO A 908 4 HET EDO A 909 4 HET PEG A 910 7 HET EDO A 911 4 HET ZN A 912 1 HET ZN A 913 1 HET EDO A 914 4 HET EDO A 915 4 HET EDO A 916 4 HET EDO A 917 4 HET EDO A 918 4 HET ZN A 919 1 HET ZN A 920 1 HET ZN A 921 1 HET ZN A 922 1 HET EDO A 923 4 HET EDO A 924 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZF7 (1R,3S,5S)-8-{(1S)-1-[8-(TRIFLUOROMETHYL)-7-{[(1S,4R)- HETNAM 2 ZF7 4-(TRIFLUOROMETHYL)CYCLOHEXYL]OXY}NAPHTHALEN-2- HETNAM 3 ZF7 YL]ETHYL}-8-AZABICYCLO[3.2.1]OCTANE-3-CARBOXYLIC ACID HETNAM IOD IODIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN ZF7 BIO-32546 HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 3(C6 H12 O6) FORMUL 4 ZF7 C28 H31 F6 N O3 FORMUL 5 IOD I 1- FORMUL 6 EDO 14(C2 H6 O2) FORMUL 7 ZN 7(ZN 2+) FORMUL 13 PEG C4 H10 O3 FORMUL 28 HOH *172(H2 O) HELIX 1 AA1 CYS A 79 SER A 83 5 5 HELIX 2 AA2 ASP A 88 LEU A 94 1 7 HELIX 3 AA3 THR A 103 CYS A 107 5 5 HELIX 4 AA4 ASP A 122 GLY A 127 1 6 HELIX 5 AA5 ASN A 132 LYS A 138 1 7 HELIX 6 AA6 HIS A 142 ASP A 146 5 5 HELIX 7 AA7 ARG A 174 VAL A 184 5 11 HELIX 8 AA8 MET A 185 GLY A 195 1 11 HELIX 9 AA9 LYS A 208 GLY A 219 1 12 HELIX 10 AB1 TYR A 221 GLY A 226 1 6 HELIX 11 AB2 ARG A 246 TRP A 254 5 9 HELIX 12 AB3 PRO A 258 GLN A 266 1 9 HELIX 13 AB4 PRO A 280 SER A 293 1 14 HELIX 14 AB5 ASP A 311 GLY A 318 1 8 HELIX 15 AB6 GLY A 321 GLU A 323 5 3 HELIX 16 AB7 MET A 324 LEU A 345 1 22 HELIX 17 AB8 THR A 365 ASP A 367 5 3 HELIX 18 AB9 SER A 373 TYR A 375 5 3 HELIX 19 AC1 ASN A 378 ASP A 380 5 3 HELIX 20 AC2 ASP A 403 LEU A 411 1 9 HELIX 21 AC3 GLN A 426 LEU A 428 5 3 HELIX 22 AC4 PRO A 429 HIS A 433 5 5 HELIX 23 AC5 VAL A 480 GLN A 484 5 5 HELIX 24 AC6 GLU A 507 LEU A 516 1 10 HELIX 25 AC7 LEU A 530 LEU A 534 5 5 HELIX 26 AC8 LEU A 558 PHE A 562 5 5 HELIX 27 AC9 GLU A 592 LEU A 596 1 5 HELIX 28 AD1 SER A 659 SER A 663 5 5 HELIX 29 AD2 ASN A 665 ASP A 672 1 8 HELIX 30 AD3 PRO A 682 SER A 686 5 5 HELIX 31 AD4 ALA A 691 PHE A 696 1 6 HELIX 32 AD5 LEU A 697 THR A 699 5 3 HELIX 33 AD6 TYR A 705 VAL A 718 1 14 HELIX 34 AD7 VAL A 718 ARG A 727 1 10 HELIX 35 AD8 PRO A 780 CYS A 784 5 5 HELIX 36 AD9 ASP A 810 LYS A 813 5 4 HELIX 37 AE1 TRP A 814 HIS A 822 1 9 HELIX 38 AE2 ARG A 825 GLY A 834 1 10 HELIX 39 AE3 SER A 844 THR A 853 1 10 SHEET 1 AA1 6 VAL A 302 PRO A 310 0 SHEET 2 AA1 6 LEU A 165 ASP A 171 1 N ILE A 167 O TYR A 303 SHEET 3 AA1 6 ASN A 352 GLY A 357 1 O ILE A 354 N PHE A 168 SHEET 4 AA1 6 PHE A 487 TYR A 490 -1 O TYR A 490 N VAL A 353 SHEET 5 AA1 6 THR A 196 HIS A 197 -1 N THR A 196 O GLY A 489 SHEET 6 AA1 6 THR A 498 LYS A 499 1 O THR A 498 N HIS A 197 SHEET 1 AA2 2 MET A 201 ARG A 202 0 SHEET 2 AA2 2 PHE A 503 GLU A 504 1 O PHE A 503 N ARG A 202 SHEET 1 AA3 2 MET A 232 ASP A 234 0 SHEET 2 AA3 2 ALA A 239 PHE A 241 -1 O PHE A 241 N MET A 232 SHEET 1 AA4 2 GLU A 362 ASP A 363 0 SHEET 2 AA4 2 GLY A 472 ASP A 473 -1 O ASP A 473 N GLU A 362 SHEET 1 AA5 2 THR A 369 PHE A 371 0 SHEET 2 AA5 2 HIS A 452 ALA A 454 1 O HIS A 452 N GLU A 370 SHEET 1 AA6 4 ILE A 382 VAL A 385 0 SHEET 2 AA6 4 LEU A 389 PRO A 394 -1 O ARG A 393 N THR A 383 SHEET 3 AA6 4 LEU A 443 VAL A 447 -1 O LEU A 445 N GLY A 390 SHEET 4 AA6 4 PHE A 420 MET A 424 -1 N TYR A 423 O HIS A 444 SHEET 1 AA7 2 ALA A 602 VAL A 603 0 SHEET 2 AA7 2 LEU A 835 ASP A 836 -1 O ASP A 836 N ALA A 602 SHEET 1 AA8 6 TYR A 609 TYR A 613 0 SHEET 2 AA8 6 GLU A 618 SER A 622 -1 O TYR A 621 N ASP A 610 SHEET 3 AA8 6 MET A 627 ILE A 635 -1 O SER A 632 N GLU A 618 SHEET 4 AA8 6 VAL A 730 ILE A 737 -1 O VAL A 732 N TYR A 633 SHEET 5 AA8 6 HIS A 766 CYS A 774 -1 O THR A 772 N ASN A 731 SHEET 6 AA8 6 LEU A 788 PRO A 796 -1 O SER A 791 N ILE A 771 SHEET 1 AA9 2 SER A 676 PHE A 679 0 SHEET 2 AA9 2 MET A 701 MET A 704 -1 O MET A 704 N SER A 676 SSBOND 1 CYS A 58 CYS A 75 1555 1555 2.03 SSBOND 2 CYS A 62 CYS A 93 1555 1555 2.03 SSBOND 3 CYS A 73 CYS A 86 1555 1555 2.04 SSBOND 4 CYS A 79 CYS A 85 1555 1555 2.04 SSBOND 5 CYS A 102 CYS A 119 1555 1555 2.03 SSBOND 6 CYS A 107 CYS A 137 1555 1555 2.03 SSBOND 7 CYS A 117 CYS A 130 1555 1555 2.03 SSBOND 8 CYS A 123 CYS A 129 1555 1555 2.03 SSBOND 9 CYS A 148 CYS A 194 1555 1555 2.03 SSBOND 10 CYS A 156 CYS A 350 1555 1555 2.03 SSBOND 11 CYS A 366 CYS A 468 1555 1555 2.03 SSBOND 12 CYS A 413 CYS A 805 1555 1555 2.03 SSBOND 13 CYS A 566 CYS A 666 1555 1555 2.03 SSBOND 14 CYS A 568 CYS A 651 1555 1555 2.03 SSBOND 15 CYS A 774 CYS A 784 1555 1555 2.03 LINK ND2 ASN A 410 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 524 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.44 LINK O3 MAN B 4 C1 MAN B 5 1555 1555 1.44 LINK O2 MAN B 5 C1 MAN B 6 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK ND1 HIS A 281 ZN ZN A 919 1555 1555 2.32 LINK OD1 ASP A 311 ZN ZN A 912 1555 1555 2.24 LINK OD2 ASP A 311 ZN ZN A 912 1555 1555 2.28 LINK NE2 HIS A 315 ZN ZN A 912 1555 1555 2.29 LINK NE2 HIS A 474 ZN ZN A 912 1555 1555 2.30 LINK OD1 ASP A 739 ZN ZN A 904 1555 1555 2.40 LINK OD1 ASN A 741 ZN ZN A 904 1555 1555 2.44 LINK OD1 ASN A 743 ZN ZN A 904 1555 1555 2.46 LINK O LEU A 745 ZN ZN A 904 1555 1555 2.62 LINK OD1 ASP A 747 ZN ZN A 904 1555 1555 2.46 LINK OE2 GLU A 847 ZN ZN A 913 1555 1555 1.95 LINK ZN ZN A 904 O HOH A1012 1555 1555 2.61 LINK ZN ZN A 912 O HOH A1156 1555 1555 2.29 LINK ZN ZN A 920 O HOH A1063 1555 1555 2.06 LINK ZN ZN A 921 O HOH A1148 1555 1555 2.01 CISPEP 1 TYR A 205 PRO A 206 0 -0.05 CISPEP 2 GLN A 309 PRO A 310 0 1.38 CRYST1 61.020 61.620 67.320 89.07 74.20 79.88 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016388 -0.002926 -0.004737 0.00000 SCALE2 0.000000 0.016485 0.000551 0.00000 SCALE3 0.000000 0.000000 0.015446 0.00000