HEADER OXIDOREDUCTASE 13-APR-21 7MGO TITLE CRYSTAL STRUCTURE OF F501H VARIANT OF 2-KETOPROPYL COENZYME M TITLE 2 OXIDOREDUCTASE/CARBOXYLASE (2-KPCC) FROM XANTHOBACTER AUTOTROPHICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOPROPYL-COM REDUCTASE, CARBOXYLATING; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALIPHATIC EPOXIDE CARBOXYLATION COMPONENT II,NADPH:2- COMPND 5 KETOPROPYL-COM CARBOXYLASE/OXIDOREDUCTASE,2-KPCC; COMPND 6 EC: 1.8.1.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOBACTER AUTOTROPHICUS PY2; SOURCE 3 ORGANISM_TAXID: 78245; SOURCE 4 STRAIN: ATCC BAA-1158 / PY2; SOURCE 5 GENE: XECC, XAUT_4867; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS CARBOXYLATION, OXIDATION-REDUCTION, CARBON DIOXIDE FIXATION, CARBON- KEYWDS 2 CARBON BOND, ANION-BINDING, KINETICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.PRUSSIA,O.A.ZADVORNYY,J.W.PETERS REVDAT 4 18-OCT-23 7MGO 1 REMARK REVDAT 3 18-AUG-21 7MGO 1 JRNL REVDAT 2 28-JUL-21 7MGO 1 JRNL REVDAT 1 21-JUL-21 7MGO 0 JRNL AUTH G.A.PRUSSIA,K.A.SHISLER,O.A.ZADVORNYY,B.R.STREIT,J.L.DUBOIS, JRNL AUTH 2 J.W.PETERS JRNL TITL THE UNIQUE PHE-HIS DYAD OF 2-KETOPROPYL COENZYME M JRNL TITL 2 OXIDOREDUCTASE/CARBOXYLASE SELECTIVELY PROMOTES JRNL TITL 3 CARBOXYLATION AND S-C BOND CLEAVAGE. JRNL REF J.BIOL.CHEM. V. 297 00961 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34265301 JRNL DOI 10.1016/J.JBC.2021.100961 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4085 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 87717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 4351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1900 - 5.7400 0.98 2992 147 0.1748 0.1922 REMARK 3 2 5.7400 - 4.5600 0.98 2897 150 0.1431 0.1703 REMARK 3 3 4.5600 - 3.9800 1.00 2938 146 0.1302 0.1319 REMARK 3 4 3.9800 - 3.6200 0.99 2902 148 0.1345 0.1884 REMARK 3 5 3.6200 - 3.3600 0.97 2841 140 0.1538 0.2061 REMARK 3 6 3.3600 - 3.1600 0.99 2882 160 0.1624 0.1865 REMARK 3 7 3.1600 - 3.0000 0.99 2889 149 0.1700 0.2227 REMARK 3 8 3.0000 - 2.8700 0.99 2866 156 0.1801 0.1940 REMARK 3 9 2.8700 - 2.7600 0.99 2922 110 0.1822 0.2116 REMARK 3 10 2.7600 - 2.6700 0.97 2828 144 0.1815 0.1960 REMARK 3 11 2.6700 - 2.5800 0.98 2843 150 0.1831 0.2362 REMARK 3 12 2.5800 - 2.5100 0.98 2787 160 0.1670 0.1911 REMARK 3 13 2.5100 - 2.4400 0.99 2935 151 0.1764 0.1935 REMARK 3 14 2.4400 - 2.3900 0.99 2821 166 0.1807 0.2104 REMARK 3 15 2.3800 - 2.3300 0.99 2851 145 0.1834 0.2215 REMARK 3 16 2.3300 - 2.2800 0.99 2870 144 0.1792 0.2283 REMARK 3 17 2.2800 - 2.2400 0.96 2772 155 0.1967 0.2201 REMARK 3 18 2.2400 - 2.1900 0.97 2808 170 0.1971 0.2364 REMARK 3 19 2.1900 - 2.1500 0.98 2819 143 0.1974 0.2279 REMARK 3 20 2.1500 - 2.1200 0.99 2867 146 0.1973 0.2564 REMARK 3 21 2.1200 - 2.0800 0.99 2839 137 0.2060 0.2342 REMARK 3 22 2.0800 - 2.0500 0.99 2893 160 0.2050 0.2643 REMARK 3 23 2.0500 - 2.0200 0.99 2850 130 0.2112 0.2376 REMARK 3 24 2.0200 - 1.9900 0.99 2879 158 0.2116 0.2547 REMARK 3 25 1.9900 - 1.9700 0.99 2871 142 0.2334 0.2239 REMARK 3 26 1.9700 - 1.9400 0.92 2593 161 0.2384 0.2648 REMARK 3 27 1.9400 - 1.9200 0.87 2551 121 0.2682 0.3137 REMARK 3 28 1.9200 - 1.8900 0.80 2273 131 0.2838 0.3944 REMARK 3 29 1.8900 - 1.8700 0.77 2236 109 0.2970 0.2712 REMARK 3 30 1.8700 - 1.8500 0.71 2051 122 0.3129 0.3638 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 8070 REMARK 3 ANGLE : 1.264 10932 REMARK 3 CHIRALITY : 0.083 1196 REMARK 3 PLANARITY : 0.009 1413 REMARK 3 DIHEDRAL : 12.344 1126 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 4:73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.020 -3.268 111.037 REMARK 3 T TENSOR REMARK 3 T11: 0.6836 T22: 0.6523 REMARK 3 T33: 0.5072 T12: 0.0697 REMARK 3 T13: -0.2549 T23: -0.0736 REMARK 3 L TENSOR REMARK 3 L11: 0.6363 L22: 0.9183 REMARK 3 L33: 0.8986 L12: -0.0768 REMARK 3 L13: -0.0964 L23: 0.1843 REMARK 3 S TENSOR REMARK 3 S11: 0.1411 S12: 0.5919 S13: 0.0399 REMARK 3 S21: -0.9702 S22: -0.3864 S23: 0.5968 REMARK 3 S31: -0.1611 S32: -0.3752 S33: 0.1486 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 74:337 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.045 6.527 136.802 REMARK 3 T TENSOR REMARK 3 T11: 0.2079 T22: 0.2647 REMARK 3 T33: 0.2520 T12: -0.0367 REMARK 3 T13: -0.0604 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.3114 L22: 0.8857 REMARK 3 L33: 0.5572 L12: -0.3995 REMARK 3 L13: -0.3927 L23: 0.1574 REMARK 3 S TENSOR REMARK 3 S11: -0.0285 S12: 0.2068 S13: -0.0615 REMARK 3 S21: -0.2053 S22: -0.0348 S23: 0.2985 REMARK 3 S31: 0.0499 S32: -0.2046 S33: 0.0806 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 338:523 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.926 -6.088 138.242 REMARK 3 T TENSOR REMARK 3 T11: 0.2233 T22: 0.2149 REMARK 3 T33: 0.1883 T12: -0.0398 REMARK 3 T13: 0.0023 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.0391 L22: 0.7972 REMARK 3 L33: 0.6825 L12: -0.1774 REMARK 3 L13: -0.2004 L23: 0.1220 REMARK 3 S TENSOR REMARK 3 S11: -0.0667 S12: 0.0182 S13: -0.1713 REMARK 3 S21: -0.1225 S22: 0.0478 S23: 0.0213 REMARK 3 S31: 0.0936 S32: -0.0645 S33: 0.0152 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 3:180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.005 9.821 144.413 REMARK 3 T TENSOR REMARK 3 T11: 0.2409 T22: 0.2605 REMARK 3 T33: 0.3124 T12: -0.0478 REMARK 3 T13: 0.0257 T23: -0.0672 REMARK 3 L TENSOR REMARK 3 L11: 0.8366 L22: 0.6032 REMARK 3 L33: 0.3957 L12: -0.0748 REMARK 3 L13: 0.1987 L23: -0.1676 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.0911 S13: 0.0395 REMARK 3 S21: 0.0060 S22: 0.0610 S23: -0.2047 REMARK 3 S31: -0.1185 S32: 0.0875 S33: -0.0290 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 181:335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.845 21.414 121.182 REMARK 3 T TENSOR REMARK 3 T11: 0.4046 T22: 0.2512 REMARK 3 T33: 0.2907 T12: -0.0965 REMARK 3 T13: 0.1027 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 0.5767 L22: 0.4773 REMARK 3 L33: 0.4201 L12: 0.0426 REMARK 3 L13: 0.0234 L23: -0.1310 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: 0.0908 S13: 0.0951 REMARK 3 S21: -0.2688 S22: 0.0698 S23: -0.2059 REMARK 3 S31: -0.1560 S32: 0.0918 S33: -0.0374 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 336:401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.788 -2.122 128.809 REMARK 3 T TENSOR REMARK 3 T11: 0.3085 T22: 0.2715 REMARK 3 T33: 0.3161 T12: -0.0503 REMARK 3 T13: 0.0877 T23: -0.0754 REMARK 3 L TENSOR REMARK 3 L11: 1.0851 L22: 0.5987 REMARK 3 L33: 0.4471 L12: -0.1581 REMARK 3 L13: 0.2617 L23: -0.2046 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: 0.1524 S13: -0.1065 REMARK 3 S21: -0.2218 S22: 0.0544 S23: -0.2452 REMARK 3 S31: -0.0115 S32: 0.1433 S33: -0.0778 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 402:522 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.862 -1.082 117.716 REMARK 3 T TENSOR REMARK 3 T11: 0.4056 T22: 0.3039 REMARK 3 T33: 0.1961 T12: -0.0733 REMARK 3 T13: -0.0287 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 0.7900 L22: 1.3190 REMARK 3 L33: 0.6912 L12: -0.0311 REMARK 3 L13: -0.2809 L23: -0.0881 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.2094 S13: -0.1262 REMARK 3 S21: -0.4471 S22: 0.0475 S23: 0.1267 REMARK 3 S31: 0.0876 S32: -0.1171 S33: -0.0164 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9884 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87767 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 39.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2C3C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM ACETATE, 0.085 M REMARK 280 TRISODIUM CITRATE PH 5.6, 27% PEG 4,000, AND 15% GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.10450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 24 REMARK 465 GLU A 25 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 ASP A 28 REMARK 465 GLY A 29 REMARK 465 ASP A 37 REMARK 465 GLU A 38 REMARK 465 ASN A 39 REMARK 465 ASP A 40 REMARK 465 PRO A 41 REMARK 465 THR A 116 REMARK 465 GLU A 117 REMARK 465 LYS A 118 REMARK 465 LYS A 159 REMARK 465 VAL A 160 REMARK 465 GLU A 167 REMARK 465 ALA A 168 REMARK 465 ALA A 169 REMARK 465 GLY A 170 REMARK 465 LYS A 171 REMARK 465 VAL A 172 REMARK 465 ALA A 319 REMARK 465 GLU A 320 REMARK 465 LEU A 321 REMARK 465 ALA A 322 REMARK 465 LYS A 323 REMARK 465 ILE A 324 REMARK 465 LEU A 325 REMARK 465 VAL A 345 REMARK 465 PRO A 346 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 117 REMARK 465 LYS B 118 REMARK 465 LEU B 523 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 82 HS1 COM A 602 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 85 16.68 -155.18 REMARK 500 ALA A 86 -105.64 -123.60 REMARK 500 TYR A 110 -128.99 53.05 REMARK 500 ASN A 163 0.50 -67.19 REMARK 500 ALA A 181 45.21 -142.16 REMARK 500 SER A 223 -160.62 -105.48 REMARK 500 THR A 246 -76.34 -109.60 REMARK 500 THR A 393 -136.39 -113.50 REMARK 500 SER A 434 -161.82 -164.08 REMARK 500 THR A 437 -0.02 -144.19 REMARK 500 ASN B 85 9.39 -156.94 REMARK 500 ALA B 86 -88.92 -122.12 REMARK 500 TYR B 110 -130.83 53.55 REMARK 500 ALA B 181 50.34 -142.46 REMARK 500 THR B 246 -87.97 -109.06 REMARK 500 THR B 393 -141.26 -116.67 REMARK 500 SER B 434 -166.09 -169.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 429 O REMARK 620 2 LEU A 431 O 82.6 REMARK 620 3 ALA A 447 O 90.1 160.4 REMARK 620 4 SER A 450 OG 112.7 88.5 77.5 REMARK 620 5 HOH A 758 O 154.6 105.5 88.8 91.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 429 O REMARK 620 2 LEU B 431 O 79.4 REMARK 620 3 ALA B 447 O 91.6 157.0 REMARK 620 4 SER B 450 OG 107.6 87.0 75.5 REMARK 620 5 HOH B 927 O 154.3 108.1 89.2 97.5 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7MGN RELATED DB: PDB DBREF 7MGO A 1 523 UNP Q56839 XECC_XANP2 1 523 DBREF 7MGO B 1 523 UNP Q56839 XECC_XANP2 1 523 SEQADV 7MGO HIS A 501 UNP Q56839 PHE 501 ENGINEERED MUTATION SEQADV 7MGO HIS B 501 UNP Q56839 PHE 501 ENGINEERED MUTATION SEQRES 1 A 523 MET LYS VAL TRP ASN ALA ARG ASN ASP HIS LEU THR ILE SEQRES 2 A 523 ASN GLN TRP ALA THR ARG ILE ASP GLU ILE LEU GLU ALA SEQRES 3 A 523 PRO ASP GLY GLY GLU VAL ILE TYR ASN VAL ASP GLU ASN SEQRES 4 A 523 ASP PRO ARG GLU TYR ASP ALA ILE PHE ILE GLY GLY GLY SEQRES 5 A 523 ALA ALA GLY ARG PHE GLY SER ALA TYR LEU ARG ALA MET SEQRES 6 A 523 GLY GLY ARG GLN LEU ILE VAL ASP ARG TRP PRO PHE LEU SEQRES 7 A 523 GLY GLY SER CYS PRO HIS ASN ALA CYS VAL PRO HIS HIS SEQRES 8 A 523 LEU PHE SER ASP CYS ALA ALA GLU LEU MET LEU ALA ARG SEQRES 9 A 523 THR PHE SER GLY GLN TYR TRP PHE PRO ASP MET THR GLU SEQRES 10 A 523 LYS VAL VAL GLY ILE LYS GLU VAL VAL ASP LEU PHE ARG SEQRES 11 A 523 ALA GLY ARG ASN GLY PRO HIS GLY ILE MET ASN PHE GLN SEQRES 12 A 523 SER LYS GLU GLN LEU ASN LEU GLU TYR ILE LEU ASN CYS SEQRES 13 A 523 PRO ALA LYS VAL ILE ASP ASN HIS THR VAL GLU ALA ALA SEQRES 14 A 523 GLY LYS VAL PHE LYS ALA LYS ASN LEU ILE LEU ALA VAL SEQRES 15 A 523 GLY ALA GLY PRO GLY THR LEU ASP VAL PRO GLY VAL ASN SEQRES 16 A 523 ALA LYS GLY VAL PHE ASP HIS ALA THR LEU VAL GLU GLU SEQRES 17 A 523 LEU ASP TYR GLU PRO GLY SER THR VAL VAL VAL VAL GLY SEQRES 18 A 523 GLY SER LYS THR ALA VAL GLU TYR GLY CYS PHE PHE ASN SEQRES 19 A 523 ALA THR GLY ARG ARG THR VAL MET LEU VAL ARG THR GLU SEQRES 20 A 523 PRO LEU LYS LEU ILE LYS ASP ASN GLU THR ARG ALA TYR SEQRES 21 A 523 VAL LEU ASP ARG MET LYS GLU GLN GLY MET GLU ILE ILE SEQRES 22 A 523 SER GLY SER ASN VAL THR ARG ILE GLU GLU ASP ALA ASN SEQRES 23 A 523 GLY ARG VAL GLN ALA VAL VAL ALA MET THR PRO ASN GLY SEQRES 24 A 523 GLU MET ARG ILE GLU THR ASP PHE VAL PHE LEU GLY LEU SEQRES 25 A 523 GLY GLU GLN PRO ARG SER ALA GLU LEU ALA LYS ILE LEU SEQRES 26 A 523 GLY LEU ASP LEU GLY PRO LYS GLY GLU VAL LEU VAL ASN SEQRES 27 A 523 GLU TYR LEU GLN THR SER VAL PRO ASN VAL TYR ALA VAL SEQRES 28 A 523 GLY ASP LEU ILE GLY GLY PRO MET GLU MET PHE LYS ALA SEQRES 29 A 523 ARG LYS SER GLY CYS TYR ALA ALA ARG ASN VAL MET GLY SEQRES 30 A 523 GLU LYS ILE SER TYR THR PRO LYS ASN TYR PRO ASP PHE SEQRES 31 A 523 LEU HIS THR HIS TYR GLU VAL SER PHE LEU GLY MET GLY SEQRES 32 A 523 GLU GLU GLU ALA ARG ALA ALA GLY HIS GLU ILE VAL THR SEQRES 33 A 523 ILE LYS MET PRO PRO ASP THR GLU ASN GLY LEU ASN VAL SEQRES 34 A 523 ALA LEU PRO ALA SER ASP ARG THR MET LEU TYR ALA PHE SEQRES 35 A 523 GLY LYS GLY THR ALA HIS MET SER GLY PHE GLN LYS ILE SEQRES 36 A 523 VAL ILE ASP ALA LYS THR ARG LYS VAL LEU GLY ALA HIS SEQRES 37 A 523 HIS VAL GLY TYR GLY ALA LYS ASP ALA PHE GLN TYR LEU SEQRES 38 A 523 ASN VAL LEU ILE LYS GLN GLY LEU THR VAL ASP GLU LEU SEQRES 39 A 523 GLY ASP MET ASP GLU LEU HIS LEU ASN PRO THR HIS PHE SEQRES 40 A 523 ILE GLN LEU SER ARG LEU ARG ALA GLY SER LYS ASN LEU SEQRES 41 A 523 VAL SER LEU SEQRES 1 B 523 MET LYS VAL TRP ASN ALA ARG ASN ASP HIS LEU THR ILE SEQRES 2 B 523 ASN GLN TRP ALA THR ARG ILE ASP GLU ILE LEU GLU ALA SEQRES 3 B 523 PRO ASP GLY GLY GLU VAL ILE TYR ASN VAL ASP GLU ASN SEQRES 4 B 523 ASP PRO ARG GLU TYR ASP ALA ILE PHE ILE GLY GLY GLY SEQRES 5 B 523 ALA ALA GLY ARG PHE GLY SER ALA TYR LEU ARG ALA MET SEQRES 6 B 523 GLY GLY ARG GLN LEU ILE VAL ASP ARG TRP PRO PHE LEU SEQRES 7 B 523 GLY GLY SER CYS PRO HIS ASN ALA CYS VAL PRO HIS HIS SEQRES 8 B 523 LEU PHE SER ASP CYS ALA ALA GLU LEU MET LEU ALA ARG SEQRES 9 B 523 THR PHE SER GLY GLN TYR TRP PHE PRO ASP MET THR GLU SEQRES 10 B 523 LYS VAL VAL GLY ILE LYS GLU VAL VAL ASP LEU PHE ARG SEQRES 11 B 523 ALA GLY ARG ASN GLY PRO HIS GLY ILE MET ASN PHE GLN SEQRES 12 B 523 SER LYS GLU GLN LEU ASN LEU GLU TYR ILE LEU ASN CYS SEQRES 13 B 523 PRO ALA LYS VAL ILE ASP ASN HIS THR VAL GLU ALA ALA SEQRES 14 B 523 GLY LYS VAL PHE LYS ALA LYS ASN LEU ILE LEU ALA VAL SEQRES 15 B 523 GLY ALA GLY PRO GLY THR LEU ASP VAL PRO GLY VAL ASN SEQRES 16 B 523 ALA LYS GLY VAL PHE ASP HIS ALA THR LEU VAL GLU GLU SEQRES 17 B 523 LEU ASP TYR GLU PRO GLY SER THR VAL VAL VAL VAL GLY SEQRES 18 B 523 GLY SER LYS THR ALA VAL GLU TYR GLY CYS PHE PHE ASN SEQRES 19 B 523 ALA THR GLY ARG ARG THR VAL MET LEU VAL ARG THR GLU SEQRES 20 B 523 PRO LEU LYS LEU ILE LYS ASP ASN GLU THR ARG ALA TYR SEQRES 21 B 523 VAL LEU ASP ARG MET LYS GLU GLN GLY MET GLU ILE ILE SEQRES 22 B 523 SER GLY SER ASN VAL THR ARG ILE GLU GLU ASP ALA ASN SEQRES 23 B 523 GLY ARG VAL GLN ALA VAL VAL ALA MET THR PRO ASN GLY SEQRES 24 B 523 GLU MET ARG ILE GLU THR ASP PHE VAL PHE LEU GLY LEU SEQRES 25 B 523 GLY GLU GLN PRO ARG SER ALA GLU LEU ALA LYS ILE LEU SEQRES 26 B 523 GLY LEU ASP LEU GLY PRO LYS GLY GLU VAL LEU VAL ASN SEQRES 27 B 523 GLU TYR LEU GLN THR SER VAL PRO ASN VAL TYR ALA VAL SEQRES 28 B 523 GLY ASP LEU ILE GLY GLY PRO MET GLU MET PHE LYS ALA SEQRES 29 B 523 ARG LYS SER GLY CYS TYR ALA ALA ARG ASN VAL MET GLY SEQRES 30 B 523 GLU LYS ILE SER TYR THR PRO LYS ASN TYR PRO ASP PHE SEQRES 31 B 523 LEU HIS THR HIS TYR GLU VAL SER PHE LEU GLY MET GLY SEQRES 32 B 523 GLU GLU GLU ALA ARG ALA ALA GLY HIS GLU ILE VAL THR SEQRES 33 B 523 ILE LYS MET PRO PRO ASP THR GLU ASN GLY LEU ASN VAL SEQRES 34 B 523 ALA LEU PRO ALA SER ASP ARG THR MET LEU TYR ALA PHE SEQRES 35 B 523 GLY LYS GLY THR ALA HIS MET SER GLY PHE GLN LYS ILE SEQRES 36 B 523 VAL ILE ASP ALA LYS THR ARG LYS VAL LEU GLY ALA HIS SEQRES 37 B 523 HIS VAL GLY TYR GLY ALA LYS ASP ALA PHE GLN TYR LEU SEQRES 38 B 523 ASN VAL LEU ILE LYS GLN GLY LEU THR VAL ASP GLU LEU SEQRES 39 B 523 GLY ASP MET ASP GLU LEU HIS LEU ASN PRO THR HIS PHE SEQRES 40 B 523 ILE GLN LEU SER ARG LEU ARG ALA GLY SER LYS ASN LEU SEQRES 41 B 523 VAL SER LEU HET FDA A 601 53 HET COM A 602 12 HET MG A 603 1 HET FDA B 601 53 HET COM B 602 12 HET MG B 603 1 HETNAM FDA DIHYDROFLAVINE-ADENINE DINUCLEOTIDE HETNAM COM 1-THIOETHANESULFONIC ACID HETNAM MG MAGNESIUM ION FORMUL 3 FDA 2(C27 H35 N9 O15 P2) FORMUL 4 COM 2(C2 H6 O3 S2) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *667(H2 O) HELIX 1 AA1 THR A 12 ILE A 23 1 12 HELIX 2 AA2 GLY A 52 MET A 65 1 14 HELIX 3 AA3 GLY A 80 ALA A 86 1 7 HELIX 4 AA4 ALA A 86 PHE A 106 1 21 HELIX 5 AA5 GLY A 121 ARG A 133 1 13 HELIX 6 AA6 ARG A 133 GLN A 147 1 15 HELIX 7 AA7 ASP A 201 LEU A 209 1 9 HELIX 8 AA8 SER A 223 THR A 236 1 14 HELIX 9 AA9 ASP A 254 GLN A 268 1 15 HELIX 10 AB1 GLY A 352 GLY A 356 5 5 HELIX 11 AB2 GLU A 360 MET A 376 1 17 HELIX 12 AB3 GLY A 403 ALA A 410 1 8 HELIX 13 AB4 THR A 437 GLY A 443 1 7 HELIX 14 AB5 THR A 446 GLY A 451 5 6 HELIX 15 AB6 ALA A 474 GLN A 487 1 14 HELIX 16 AB7 THR A 490 ASP A 496 1 7 HELIX 17 AB8 HIS A 506 ALA A 515 1 10 HELIX 18 AB9 THR B 12 ALA B 26 1 15 HELIX 19 AC1 GLY B 52 MET B 65 1 14 HELIX 20 AC2 GLY B 80 ALA B 86 1 7 HELIX 21 AC3 ALA B 86 PHE B 106 1 21 HELIX 22 AC4 GLY B 121 ARG B 133 1 13 HELIX 23 AC5 ARG B 133 GLN B 147 1 15 HELIX 24 AC6 ASP B 201 LEU B 209 1 9 HELIX 25 AC7 SER B 223 THR B 236 1 14 HELIX 26 AC8 ASP B 254 GLN B 268 1 15 HELIX 27 AC9 SER B 318 GLY B 326 1 9 HELIX 28 AD1 GLY B 352 GLY B 356 5 5 HELIX 29 AD2 GLU B 360 MET B 376 1 17 HELIX 30 AD3 GLY B 403 ALA B 410 1 8 HELIX 31 AD4 THR B 437 GLY B 443 1 7 HELIX 32 AD5 THR B 446 GLY B 451 5 6 HELIX 33 AD6 ALA B 474 GLN B 487 1 14 HELIX 34 AD7 THR B 490 ASP B 496 1 7 HELIX 35 AD8 HIS B 506 ALA B 515 1 10 SHEET 1 AA1 6 ILE A 33 ASN A 35 0 SHEET 2 AA1 6 TYR A 152 LEU A 154 -1 O TYR A 152 N ASN A 35 SHEET 3 AA1 6 GLN A 69 ASP A 73 1 N ILE A 71 O ILE A 153 SHEET 4 AA1 6 TYR A 44 ILE A 49 1 N PHE A 48 O LEU A 70 SHEET 5 AA1 6 ALA A 175 LEU A 180 1 O LYS A 176 N TYR A 44 SHEET 6 AA1 6 VAL A 348 ALA A 350 1 O TYR A 349 N LEU A 180 SHEET 1 AA2 2 ALA A 184 GLY A 185 0 SHEET 2 AA2 2 GLN A 315 PRO A 316 -1 O GLN A 315 N GLY A 185 SHEET 1 AA3 5 VAL A 199 PHE A 200 0 SHEET 2 AA3 5 VAL A 308 LEU A 310 1 O LEU A 310 N PHE A 200 SHEET 3 AA3 5 THR A 216 VAL A 220 1 N VAL A 218 O PHE A 309 SHEET 4 AA3 5 ARG A 239 LEU A 243 1 O LEU A 243 N VAL A 219 SHEET 5 AA3 5 GLU A 271 ILE A 273 1 O GLU A 271 N MET A 242 SHEET 1 AA4 3 ASN A 277 GLU A 283 0 SHEET 2 AA4 3 VAL A 289 THR A 296 -1 O VAL A 293 N THR A 279 SHEET 3 AA4 3 GLY A 299 GLU A 304 -1 O ILE A 303 N VAL A 292 SHEET 1 AA5 5 ASP A 389 HIS A 392 0 SHEET 2 AA5 5 GLU A 396 GLY A 401 -1 O PHE A 399 N ASP A 389 SHEET 3 AA5 5 VAL A 464 GLY A 471 -1 O GLY A 471 N GLU A 396 SHEET 4 AA5 5 PHE A 452 ASP A 458 -1 N PHE A 452 O VAL A 470 SHEET 5 AA5 5 ILE A 414 MET A 419 -1 N VAL A 415 O ILE A 457 SHEET 1 AA6 7 TRP B 4 ASN B 5 0 SHEET 2 AA6 7 ILE B 33 ASN B 35 1 O TYR B 34 N TRP B 4 SHEET 3 AA6 7 TYR B 152 LEU B 154 -1 O TYR B 152 N ASN B 35 SHEET 4 AA6 7 GLN B 69 VAL B 72 1 N ILE B 71 O ILE B 153 SHEET 5 AA6 7 ALA B 46 ILE B 49 1 N PHE B 48 O VAL B 72 SHEET 6 AA6 7 LEU B 178 LEU B 180 1 O ILE B 179 N ILE B 47 SHEET 7 AA6 7 VAL B 348 ALA B 350 1 O TYR B 349 N LEU B 180 SHEET 1 AA7 3 LYS B 159 ASP B 162 0 SHEET 2 AA7 3 THR B 165 ALA B 168 -1 O GLU B 167 N LYS B 159 SHEET 3 AA7 3 LYS B 171 LYS B 174 -1 O PHE B 173 N VAL B 166 SHEET 1 AA8 2 ALA B 184 GLY B 185 0 SHEET 2 AA8 2 GLN B 315 PRO B 316 -1 O GLN B 315 N GLY B 185 SHEET 1 AA9 5 VAL B 199 PHE B 200 0 SHEET 2 AA9 5 VAL B 308 LEU B 310 1 O VAL B 308 N PHE B 200 SHEET 3 AA9 5 THR B 216 VAL B 220 1 N VAL B 220 O PHE B 309 SHEET 4 AA9 5 ARG B 239 LEU B 243 1 O ARG B 239 N VAL B 217 SHEET 5 AA9 5 GLU B 271 ILE B 273 1 O GLU B 271 N MET B 242 SHEET 1 AB1 3 ASN B 277 GLU B 283 0 SHEET 2 AB1 3 VAL B 289 THR B 296 -1 O GLN B 290 N GLU B 282 SHEET 3 AB1 3 GLY B 299 GLU B 304 -1 O ILE B 303 N VAL B 292 SHEET 1 AB2 5 ASP B 389 HIS B 392 0 SHEET 2 AB2 5 GLU B 396 GLY B 401 -1 O VAL B 397 N LEU B 391 SHEET 3 AB2 5 VAL B 464 GLY B 471 -1 O GLY B 471 N GLU B 396 SHEET 4 AB2 5 PHE B 452 ASP B 458 -1 N PHE B 452 O VAL B 470 SHEET 5 AB2 5 ILE B 414 MET B 419 -1 N VAL B 415 O ILE B 457 LINK O VAL A 429 MG MG A 603 1555 1555 2.53 LINK O LEU A 431 MG MG A 603 1555 1555 2.56 LINK O ALA A 447 MG MG A 603 1555 1555 2.57 LINK OG SER A 450 MG MG A 603 1555 1555 2.53 LINK MG MG A 603 O HOH A 758 1555 1555 2.62 LINK O VAL B 429 MG MG B 603 1555 1555 2.61 LINK O LEU B 431 MG MG B 603 1555 1555 2.60 LINK O ALA B 447 MG MG B 603 1555 1555 2.58 LINK OG SER B 450 MG MG B 603 1555 1555 2.54 LINK MG MG B 603 O HOH B 927 1555 1555 2.31 CISPEP 1 GLY A 357 PRO A 358 0 -4.38 CISPEP 2 MET A 419 PRO A 420 0 -3.68 CISPEP 3 LEU A 431 PRO A 432 0 -6.82 CISPEP 4 HIS A 501 LEU A 502 0 -9.61 CISPEP 5 GLY B 357 PRO B 358 0 -3.39 CISPEP 6 MET B 419 PRO B 420 0 -4.30 CISPEP 7 LEU B 431 PRO B 432 0 -6.74 CISPEP 8 HIS B 501 LEU B 502 0 -12.60 CRYST1 87.093 60.209 104.978 90.00 100.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011482 0.000000 0.002122 0.00000 SCALE2 0.000000 0.016609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009687 0.00000