HEADER TRANSFERASE/RNA 20-APR-21 7MJX TITLE MIAB IN THE COMPLEX WITH 5'-DEOXYADENOSINE, METHIONINE AND RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA-2-METHYLTHIO-N(6)-DIMETHYLALLYLADENOSINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: (DIMETHYLALLYL)ADENOSINE TRNA METHYLTHIOTRANSFERASE MIAB, COMPND 5 TRNA-I(6)A37 METHYLTHIOTRANSFERASE; COMPND 6 EC: 2.8.4.3; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(*GP*GP*AP*CP*UP*GP*AP*AP*(MIA)P*AP*UP*CP*C)-3'); COMPND 10 CHAIN: D, M; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES UNIFORMIS; SOURCE 3 ORGANISM_TAXID: 820; SOURCE 4 GENE: MIAB_2, MIAB, DW795_02470, DW831_10175, DWW14_18715, SOURCE 5 DWX44_14905, DXC07_08890, DXC80_15965, DXD90_15595, ERS417307_03809, SOURCE 6 GAP41_19630, GAP48_15545, GAP55_16410, GAQ44_15640; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: BACTEROIDES UNIFORMIS; SOURCE 12 ORGANISM_TAXID: 820 KEYWDS TRNA-2-METHYLTHIO-N(6)-DIMETHYLALLYLADENOSINE SYNTHASE, TRANSFERASE, KEYWDS 2 TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.A.ESAKOVA,T.L.GROVE,N.H.YENNAWAR,A.J.ARCINAS,B.WANG,C.KREBS, AUTHOR 2 S.C.ALMO,S.J.BOOKER REVDAT 4 18-OCT-23 7MJX 1 REMARK REVDAT 3 06-OCT-21 7MJX 1 JRNL REVDAT 2 29-SEP-21 7MJX 1 JRNL REVDAT 1 15-SEP-21 7MJX 0 JRNL AUTH O.A.ESAKOVA,T.L.GROVE,N.H.YENNAWAR,A.J.ARCINAS,B.WANG, JRNL AUTH 2 C.KREBS,S.C.ALMO,S.J.BOOKER JRNL TITL STRUCTURAL BASIS FOR TRNA METHYLTHIOLATION BY THE RADICAL JRNL TITL 2 SAM ENZYME MIAB. JRNL REF NATURE V. 597 566 2021 JRNL REFN ESSN 1476-4687 JRNL PMID 34526715 JRNL DOI 10.1038/S41586-021-03904-6 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 143390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.390 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0200 - 3.6100 0.94 10821 154 0.1302 0.1439 REMARK 3 2 3.6100 - 2.8700 0.92 10433 147 0.1397 0.1689 REMARK 3 3 2.8700 - 2.5100 0.88 10009 141 0.1517 0.1514 REMARK 3 4 2.5100 - 2.2800 0.87 9868 140 0.1491 0.1606 REMARK 3 5 2.2800 - 2.1100 0.88 9966 141 0.1444 0.1599 REMARK 3 6 2.1100 - 1.9900 0.88 9963 140 0.1528 0.1721 REMARK 3 7 1.9900 - 1.8900 0.87 9833 139 0.1503 0.1923 REMARK 3 8 1.8900 - 1.8100 0.89 10015 143 0.1501 0.1708 REMARK 3 9 1.8100 - 1.7400 0.88 10031 141 0.1534 0.1834 REMARK 3 10 1.7400 - 1.6800 0.91 10217 144 0.1591 0.1947 REMARK 3 11 1.6800 - 1.6200 0.92 10420 149 0.1657 0.1940 REMARK 3 12 1.6200 - 1.5800 0.92 10349 145 0.1686 0.2098 REMARK 3 13 1.5800 - 1.5400 0.90 10119 143 0.1837 0.2312 REMARK 3 14 1.5400 - 1.5000 0.83 9346 133 0.2111 0.2594 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 8097 REMARK 3 ANGLE : 2.042 11131 REMARK 3 CHIRALITY : 0.167 1272 REMARK 3 PLANARITY : 0.016 1349 REMARK 3 DIHEDRAL : 21.854 3212 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 36.7170 7.1073 26.8808 REMARK 3 T TENSOR REMARK 3 T11: 0.0660 T22: 0.0675 REMARK 3 T33: 0.1054 T12: -0.0099 REMARK 3 T13: 0.0126 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.0689 L22: 0.2060 REMARK 3 L33: 1.0216 L12: -0.0290 REMARK 3 L13: 0.1288 L23: -0.2998 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.0264 S13: 0.0229 REMARK 3 S21: 0.0236 S22: 0.0040 S23: -0.0011 REMARK 3 S31: -0.0628 S32: -0.0033 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MJX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 143421 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.24400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2QGQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE, PH 5.5, 13% REMARK 280 PEG 4000 AND 3% (+/-)-2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.56000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 PHE A 9 REMARK 465 LYS A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 ASP A 15 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LYS B 3 REMARK 465 VAL B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 ALA B 7 REMARK 465 ASP B 8 REMARK 465 PHE B 9 REMARK 465 LYS B 10 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 THR B 13 REMARK 465 ALA B 14 REMARK 465 ASP B 15 REMARK 465 ASP B 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH M 249 O HOH M 260 1.89 REMARK 500 O HOH B 1094 O HOH B 1103 2.02 REMARK 500 O HOH B 846 O HOH B 1190 2.08 REMARK 500 O HOH B 1083 O HOH B 1125 2.09 REMARK 500 O HOH A 1077 O HOH A 1228 2.11 REMARK 500 O HOH B 946 O HOH B 1177 2.14 REMARK 500 O HOH A 1059 O HOH A 1164 2.16 REMARK 500 O HOH A 720 O HOH A 980 2.16 REMARK 500 O HOH B 1118 O HOH B 1132 2.17 REMARK 500 O HOH B 768 O HOH B 1093 2.17 REMARK 500 OE1 GLU B 223 OG1 THR B 229 2.17 REMARK 500 O HOH A 601 O HOH A 905 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 638 O HOH B 715 1554 2.01 REMARK 500 O HOH A 627 O HOH B 1246 1554 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 184 CG ARG A 184 CD 0.167 REMARK 500 GLU A 420 CB GLU A 420 CG -0.158 REMARK 500 A D 35 C5 A D 35 N7 0.041 REMARK 500 A M 31 N3 A M 31 C4 0.042 REMARK 500 A M 35 N9 A M 35 C4 0.053 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 84 CD - CE - NZ ANGL. DEV. = 14.0 DEGREES REMARK 500 PHE A 350 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 G D 34 N7 - C8 - N9 ANGL. DEV. = -3.5 DEGREES REMARK 500 A D 35 C2 - N3 - C4 ANGL. DEV. = -3.0 DEGREES REMARK 500 A D 35 C5 - C6 - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 A D 35 C5 - C6 - N6 ANGL. DEV. = 5.3 DEGREES REMARK 500 G M 34 N9 - C4 - C5 ANGL. DEV. = 3.0 DEGREES REMARK 500 G M 34 N3 - C4 - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 A M 35 C2 - N3 - C4 ANGL. DEV. = -4.5 DEGREES REMARK 500 A M 35 C5 - C6 - N1 ANGL. DEV. = -3.8 DEGREES REMARK 500 C M 40 C6 - N1 - C2 ANGL. DEV. = -2.5 DEGREES REMARK 500 C M 40 C5 - C6 - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 17 -164.97 -78.95 REMARK 500 LYS A 103 -132.52 59.46 REMARK 500 LYS A 103 -132.55 59.48 REMARK 500 GLN A 281 -52.09 78.01 REMARK 500 LYS A 294 -20.68 84.74 REMARK 500 LYS A 294 -11.67 77.78 REMARK 500 HIS A 325 125.73 -32.57 REMARK 500 SER A 326 -0.32 76.26 REMARK 500 ASN A 422 14.49 86.51 REMARK 500 LYS B 103 -133.33 56.66 REMARK 500 ARG B 221 104.11 -160.75 REMARK 500 GLN B 281 -50.23 77.52 REMARK 500 LYS B 294 -1.31 78.45 REMARK 500 HIS B 325 126.45 -35.58 REMARK 500 SER B 326 -1.27 75.32 REMARK 500 ASN B 422 17.04 81.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 186 0.09 SIDE CHAIN REMARK 500 ARG B 188 0.08 SIDE CHAIN REMARK 500 C M 32 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1237 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1238 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1239 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A1240 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A1241 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A1242 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A1243 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH A1244 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A1245 DISTANCE = 8.53 ANGSTROMS REMARK 525 HOH B1305 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B1306 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B1307 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B1308 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B1309 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B1310 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B1311 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B1312 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B1313 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH B1314 DISTANCE = 8.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S A 501 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 27 SG REMARK 620 2 F3S A 501 S1 115.9 REMARK 620 3 F3S A 501 S3 110.5 103.4 REMARK 620 4 F3S A 501 S4 112.8 111.6 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S A 501 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 F3S A 501 S2 111.1 REMARK 620 3 F3S A 501 S3 111.3 103.4 REMARK 620 4 F3S A 501 S4 115.1 110.5 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 F3S A 501 S1 111.0 REMARK 620 3 F3S A 501 S2 108.2 119.3 REMARK 620 4 F3S A 501 S3 112.2 103.8 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 502 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 171 SG REMARK 620 2 SF4 A 502 S1 106.6 REMARK 620 3 SF4 A 502 S2 120.4 105.4 REMARK 620 4 SF4 A 502 S3 113.8 103.7 105.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 502 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 175 SG REMARK 620 2 SF4 A 502 S1 110.6 REMARK 620 3 SF4 A 502 S3 109.4 104.8 REMARK 620 4 SF4 A 502 S4 116.5 107.0 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 502 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 178 SG REMARK 620 2 SF4 A 502 S2 125.2 REMARK 620 3 SF4 A 502 S3 102.7 104.1 REMARK 620 4 SF4 A 502 S4 112.0 105.1 106.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 266 O REMARK 620 2 MET A 269 O 102.5 REMARK 620 3 VAL A 272 O 107.7 94.6 REMARK 620 4 HOH A 803 O 89.8 83.4 162.5 REMARK 620 5 HOH A 807 O 138.7 115.4 85.9 79.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 502 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 504 N REMARK 620 2 SF4 A 502 S1 85.9 REMARK 620 3 SF4 A 502 S2 99.2 97.1 REMARK 620 4 SF4 A 502 S4 162.7 97.8 97.1 REMARK 620 5 MET A 504 SD 83.5 168.7 88.6 91.2 REMARK 620 6 MET A 504 OXT 75.9 88.0 172.7 87.3 85.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 602 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 27 SG REMARK 620 2 F3S B 602 S1 114.0 REMARK 620 3 F3S B 602 S3 109.9 103.6 REMARK 620 4 F3S B 602 S4 113.6 111.1 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 602 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 63 SG REMARK 620 2 F3S B 602 S2 111.2 REMARK 620 3 F3S B 602 S3 112.3 102.7 REMARK 620 4 F3S B 602 S4 115.0 110.6 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 602 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 F3S B 602 S1 110.7 REMARK 620 3 F3S B 602 S2 107.9 120.5 REMARK 620 4 F3S B 602 S3 111.5 102.4 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 603 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 171 SG REMARK 620 2 SF4 B 603 S1 106.8 REMARK 620 3 SF4 B 603 S2 113.9 104.2 REMARK 620 4 SF4 B 603 S4 119.5 105.8 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 603 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 175 SG REMARK 620 2 SF4 B 603 S1 111.8 REMARK 620 3 SF4 B 603 S2 108.8 105.5 REMARK 620 4 SF4 B 603 S3 116.1 106.6 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 603 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 178 SG REMARK 620 2 SF4 B 603 S2 102.3 REMARK 620 3 SF4 B 603 S3 112.2 106.5 REMARK 620 4 SF4 B 603 S4 126.1 103.7 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 606 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 266 O REMARK 620 2 MET B 269 O 103.3 REMARK 620 3 VAL B 272 O 104.9 95.8 REMARK 620 4 HOH B 722 O 139.9 113.4 87.5 REMARK 620 5 HOH B 948 O 88.5 86.6 165.4 78.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 603 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 605 N REMARK 620 2 SF4 B 603 S1 87.4 REMARK 620 3 SF4 B 603 S3 162.3 97.6 REMARK 620 4 SF4 B 603 S4 99.7 97.7 96.5 REMARK 620 5 MET B 605 O 74.2 86.7 89.1 172.4 REMARK 620 6 MET B 605 SD 82.8 168.7 90.3 89.4 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA M 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C M 32 O2' REMARK 620 2 C M 32 O2 87.6 REMARK 620 3 HOH M 234 O 99.1 76.2 REMARK 620 4 HOH M 254 O 76.8 163.6 100.8 REMARK 620 5 HOH M 259 O 162.4 105.9 95.2 90.5 REMARK 620 N 1 2 3 4 DBREF1 7MJX A 1 457 UNP A0A174NUT3_BACUN DBREF2 7MJX A A0A174NUT3 1 457 DBREF1 7MJX B 1 457 UNP A0A174NUT3_BACUN DBREF2 7MJX B A0A174NUT3 1 457 DBREF 7MJX D 29 41 PDB 7MJX 7MJX 29 41 DBREF 7MJX M 29 41 PDB 7MJX 7MJX 29 41 SEQRES 1 A 457 MET GLU LYS VAL THR GLY ALA ASP PHE LYS SER ALA THR SEQRES 2 A 457 ALA ASP ASP ASN LYS LYS LEU PHE ILE GLU THR TYR GLY SEQRES 3 A 457 CYS GLN MET ASN VAL ALA ASP SER GLU VAL ILE ALA SER SEQRES 4 A 457 VAL MET GLN MET ALA GLY TYR SER VAL ALA ASP THR LEU SEQRES 5 A 457 GLU GLU ALA ASP ALA VAL PHE MET ASN THR CYS SER ILE SEQRES 6 A 457 ARG ASP ASN ALA GLU GLN LYS ILE LEU ASN ARG LEU GLU SEQRES 7 A 457 PHE PHE HIS SER LEU LYS LYS LYS LYS ARG GLY LEU ILE SEQRES 8 A 457 VAL GLY VAL LEU GLY CYS MET ALA GLU ARG VAL LYS ASP SEQRES 9 A 457 ASP LEU ILE THR ASN HIS HIS VAL ASP LEU VAL VAL GLY SEQRES 10 A 457 PRO ASP ALA TYR LEU THR LEU PRO GLU LEU ILE ALA SER SEQRES 11 A 457 VAL GLU ALA GLY GLU LYS ALA MET ASN VAL GLU LEU SER SEQRES 12 A 457 THR THR GLU THR TYR ARG ASP VAL ILE PRO SER ARG ILE SEQRES 13 A 457 CYS GLY ASN HIS ILE SER GLY PHE VAL SER ILE MET ARG SEQRES 14 A 457 GLY CYS ASN ASN PHE CYS THR TYR CYS ILE VAL PRO TYR SEQRES 15 A 457 THR ARG GLY ARG GLU ARG SER ARG ASP VAL GLU SER ILE SEQRES 16 A 457 LEU ASN GLU VAL ALA ASP LEU VAL ALA LYS GLY TYR LYS SEQRES 17 A 457 GLU VAL THR LEU LEU GLY GLN ASN VAL ASN SER TYR ARG SEQRES 18 A 457 PHE GLU LYS PRO ASP GLY GLU THR ILE THR PHE PRO MET SEQRES 19 A 457 LEU LEU ARG THR VAL ALA GLU ALA ALA PRO GLY VAL ARG SEQRES 20 A 457 ILE ARG PHE THR THR SER HIS PRO LYS ASP MET SER ASP SEQRES 21 A 457 GLU THR LEU GLN VAL ILE ALA ASP MET PRO ASN VAL CYS SEQRES 22 A 457 LYS HIS ILE HIS LEU PRO VAL GLN SER GLY SER SER ARG SEQRES 23 A 457 ILE LEU LYS LEU MET ASN ARG LYS TYR ASP ARG GLU TRP SEQRES 24 A 457 TYR MET ASP ARG VAL ALA ALA ILE ARG ARG ILE ILE PRO SEQRES 25 A 457 ASP CYS GLY LEU SER THR ASP ILE PHE SER GLY PHE HIS SEQRES 26 A 457 SER GLU THR GLU GLU ASP HIS GLN LEU SER LEU SER LEU SEQRES 27 A 457 MET GLU GLU CYS GLY TYR ASP SER ALA PHE MET PHE LYS SEQRES 28 A 457 TYR SER GLU ARG PRO GLY THR HIS ALA SER LYS HIS LEU SEQRES 29 A 457 PRO ASP ASP VAL PRO GLU GLU VAL LYS ILE ARG ARG LEU SEQRES 30 A 457 ASN GLU ILE ILE ALA LEU GLN ASN ARG LEU SER ALA GLU SEQRES 31 A 457 ALA ASN ALA ARG CYS VAL GLY LYS THR TYR GLU VAL LEU SEQRES 32 A 457 VAL GLU GLY VAL SER LYS ARG SER ARG ASP GLN LEU PHE SEQRES 33 A 457 GLY ARG THR GLU GLN ASN ARG VAL VAL VAL PHE ASP ARG SEQRES 34 A 457 GLY THR HIS ARG VAL GLY ASP PHE VAL MET VAL LYS VAL SEQRES 35 A 457 THR GLU SER SER SER ALA THR LEU LYS GLY GLU GLU VAL SEQRES 36 A 457 ALA GLY SEQRES 1 B 457 MET GLU LYS VAL THR GLY ALA ASP PHE LYS SER ALA THR SEQRES 2 B 457 ALA ASP ASP ASN LYS LYS LEU PHE ILE GLU THR TYR GLY SEQRES 3 B 457 CYS GLN MET ASN VAL ALA ASP SER GLU VAL ILE ALA SER SEQRES 4 B 457 VAL MET GLN MET ALA GLY TYR SER VAL ALA ASP THR LEU SEQRES 5 B 457 GLU GLU ALA ASP ALA VAL PHE MET ASN THR CYS SER ILE SEQRES 6 B 457 ARG ASP ASN ALA GLU GLN LYS ILE LEU ASN ARG LEU GLU SEQRES 7 B 457 PHE PHE HIS SER LEU LYS LYS LYS LYS ARG GLY LEU ILE SEQRES 8 B 457 VAL GLY VAL LEU GLY CYS MET ALA GLU ARG VAL LYS ASP SEQRES 9 B 457 ASP LEU ILE THR ASN HIS HIS VAL ASP LEU VAL VAL GLY SEQRES 10 B 457 PRO ASP ALA TYR LEU THR LEU PRO GLU LEU ILE ALA SER SEQRES 11 B 457 VAL GLU ALA GLY GLU LYS ALA MET ASN VAL GLU LEU SER SEQRES 12 B 457 THR THR GLU THR TYR ARG ASP VAL ILE PRO SER ARG ILE SEQRES 13 B 457 CYS GLY ASN HIS ILE SER GLY PHE VAL SER ILE MET ARG SEQRES 14 B 457 GLY CYS ASN ASN PHE CYS THR TYR CYS ILE VAL PRO TYR SEQRES 15 B 457 THR ARG GLY ARG GLU ARG SER ARG ASP VAL GLU SER ILE SEQRES 16 B 457 LEU ASN GLU VAL ALA ASP LEU VAL ALA LYS GLY TYR LYS SEQRES 17 B 457 GLU VAL THR LEU LEU GLY GLN ASN VAL ASN SER TYR ARG SEQRES 18 B 457 PHE GLU LYS PRO ASP GLY GLU THR ILE THR PHE PRO MET SEQRES 19 B 457 LEU LEU ARG THR VAL ALA GLU ALA ALA PRO GLY VAL ARG SEQRES 20 B 457 ILE ARG PHE THR THR SER HIS PRO LYS ASP MET SER ASP SEQRES 21 B 457 GLU THR LEU GLN VAL ILE ALA ASP MET PRO ASN VAL CYS SEQRES 22 B 457 LYS HIS ILE HIS LEU PRO VAL GLN SER GLY SER SER ARG SEQRES 23 B 457 ILE LEU LYS LEU MET ASN ARG LYS TYR ASP ARG GLU TRP SEQRES 24 B 457 TYR MET ASP ARG VAL ALA ALA ILE ARG ARG ILE ILE PRO SEQRES 25 B 457 ASP CYS GLY LEU SER THR ASP ILE PHE SER GLY PHE HIS SEQRES 26 B 457 SER GLU THR GLU GLU ASP HIS GLN LEU SER LEU SER LEU SEQRES 27 B 457 MET GLU GLU CYS GLY TYR ASP SER ALA PHE MET PHE LYS SEQRES 28 B 457 TYR SER GLU ARG PRO GLY THR HIS ALA SER LYS HIS LEU SEQRES 29 B 457 PRO ASP ASP VAL PRO GLU GLU VAL LYS ILE ARG ARG LEU SEQRES 30 B 457 ASN GLU ILE ILE ALA LEU GLN ASN ARG LEU SER ALA GLU SEQRES 31 B 457 ALA ASN ALA ARG CYS VAL GLY LYS THR TYR GLU VAL LEU SEQRES 32 B 457 VAL GLU GLY VAL SER LYS ARG SER ARG ASP GLN LEU PHE SEQRES 33 B 457 GLY ARG THR GLU GLN ASN ARG VAL VAL VAL PHE ASP ARG SEQRES 34 B 457 GLY THR HIS ARG VAL GLY ASP PHE VAL MET VAL LYS VAL SEQRES 35 B 457 THR GLU SER SER SER ALA THR LEU LYS GLY GLU GLU VAL SEQRES 36 B 457 ALA GLY SEQRES 1 D 13 G G A C U G A A ZJS A U C C SEQRES 1 M 13 G G A C U G A A ZJS A U C C HET ZJS D 37 27 HET ZJS M 37 27 HET F3S A 501 7 HET SF4 A 502 8 HET 5AD A 503 18 HET MET A 504 9 HET NA A 505 1 HET TRS B 601 8 HET F3S B 602 7 HET SF4 B 603 8 HET 5AD B 604 18 HET MET B 605 9 HET NA B 606 1 HET NA M 101 1 HETNAM ZJS N-(3-METHYLBUT-2-EN-1-YL)ADENOSINE 5'-(DIHYDROGEN HETNAM 2 ZJS PHOSPHATE) HETNAM F3S FE3-S4 CLUSTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM 5AD 5'-DEOXYADENOSINE HETNAM MET METHIONINE HETNAM NA SODIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 ZJS 2(C15 H22 N5 O7 P) FORMUL 5 F3S 2(FE3 S4) FORMUL 6 SF4 2(FE4 S4) FORMUL 7 5AD 2(C10 H13 N5 O3) FORMUL 8 MET 2(C5 H11 N O2 S) FORMUL 9 NA 3(NA 1+) FORMUL 10 TRS C4 H12 N O3 1+ FORMUL 17 HOH *1433(H2 O) HELIX 1 AA1 CYS A 27 MET A 43 1 17 HELIX 2 AA2 THR A 51 ALA A 55 5 5 HELIX 3 AA3 ARG A 66 LYS A 84 1 19 HELIX 4 AA4 CYS A 97 LYS A 103 1 7 HELIX 5 AA5 ASP A 104 HIS A 111 1 8 HELIX 6 AA6 ALA A 120 LEU A 122 5 3 HELIX 7 AA7 THR A 123 ALA A 133 1 11 HELIX 8 AA8 ILE A 179 ARG A 184 1 6 HELIX 9 AA9 ASP A 191 LYS A 205 1 15 HELIX 10 AB1 ASN A 216 SER A 219 5 4 HELIX 11 AB2 PHE A 232 ALA A 243 1 12 HELIX 12 AB3 HIS A 254 MET A 258 5 5 HELIX 13 AB4 SER A 259 MET A 269 1 11 HELIX 14 AB5 SER A 284 ASN A 292 1 9 HELIX 15 AB6 ASP A 296 ILE A 311 1 16 HELIX 16 AB7 THR A 328 GLY A 343 1 16 HELIX 17 AB8 THR A 358 LEU A 364 1 7 HELIX 18 AB9 PRO A 369 ARG A 394 1 26 HELIX 19 AC1 CYS B 27 ALA B 44 1 18 HELIX 20 AC2 THR B 51 ALA B 55 5 5 HELIX 21 AC3 ARG B 66 LYS B 84 1 19 HELIX 22 AC4 CYS B 97 LYS B 103 1 7 HELIX 23 AC5 ASP B 104 HIS B 111 1 8 HELIX 24 AC6 ALA B 120 LEU B 122 5 3 HELIX 25 AC7 THR B 123 ALA B 133 1 11 HELIX 26 AC8 ILE B 179 ARG B 184 1 6 HELIX 27 AC9 ASP B 191 LYS B 205 1 15 HELIX 28 AD1 ASN B 216 SER B 219 5 4 HELIX 29 AD2 PHE B 232 ALA B 243 1 12 HELIX 30 AD3 HIS B 254 MET B 258 5 5 HELIX 31 AD4 SER B 259 MET B 269 1 11 HELIX 32 AD5 SER B 284 MET B 291 1 8 HELIX 33 AD6 ASP B 296 ILE B 311 1 16 HELIX 34 AD7 THR B 328 GLY B 343 1 16 HELIX 35 AD8 THR B 358 LEU B 364 1 7 HELIX 36 AD9 PRO B 369 ARG B 394 1 26 SHEET 1 AA1 6 TYR A 46 VAL A 48 0 SHEET 2 AA1 6 LYS A 18 THR A 24 1 N LEU A 20 O SER A 47 SHEET 3 AA1 6 ALA A 57 THR A 62 1 O PHE A 59 N PHE A 21 SHEET 4 AA1 6 ILE A 91 GLY A 96 1 O LEU A 95 N MET A 60 SHEET 5 AA1 6 LEU A 114 VAL A 116 1 O LEU A 114 N VAL A 94 SHEET 6 AA1 6 ALA A 137 ASN A 139 1 O ASN A 139 N VAL A 115 SHEET 1 AA2 3 SER A 162 SER A 166 0 SHEET 2 AA2 3 GLU A 209 LEU A 213 1 O THR A 211 N GLY A 163 SHEET 3 AA2 3 ARG A 247 THR A 251 1 O ARG A 249 N LEU A 212 SHEET 1 AA3 2 MET A 168 ARG A 169 0 SHEET 2 AA3 2 ARG A 188 SER A 189 -1 O ARG A 188 N ARG A 169 SHEET 1 AA4 2 ARG A 221 GLU A 223 0 SHEET 2 AA4 2 THR A 229 THR A 231 -1 O ILE A 230 N PHE A 222 SHEET 1 AA5 3 HIS A 275 HIS A 277 0 SHEET 2 AA5 3 GLY A 315 SER A 322 1 O GLY A 315 N ILE A 276 SHEET 3 AA5 3 SER A 346 LYS A 351 1 O PHE A 348 N THR A 318 SHEET 1 AA6 6 THR A 399 VAL A 407 0 SHEET 2 AA6 6 GLN A 414 ARG A 418 -1 O PHE A 416 N GLU A 405 SHEET 3 AA6 6 VAL A 424 ASP A 428 -1 O VAL A 425 N GLY A 417 SHEET 4 AA6 6 LEU A 450 GLU A 454 1 O LEU A 450 N VAL A 424 SHEET 5 AA6 6 PHE A 437 SER A 445 -1 N LYS A 441 O GLU A 453 SHEET 6 AA6 6 THR A 399 VAL A 407 -1 N VAL A 402 O VAL A 438 SHEET 1 AA7 6 TYR B 46 VAL B 48 0 SHEET 2 AA7 6 LYS B 18 THR B 24 1 N LEU B 20 O SER B 47 SHEET 3 AA7 6 ALA B 57 THR B 62 1 O PHE B 59 N PHE B 21 SHEET 4 AA7 6 ILE B 91 GLY B 96 1 O LEU B 95 N MET B 60 SHEET 5 AA7 6 LEU B 114 VAL B 116 1 O LEU B 114 N VAL B 94 SHEET 6 AA7 6 ALA B 137 ASN B 139 1 O ASN B 139 N VAL B 115 SHEET 1 AA8 3 SER B 162 SER B 166 0 SHEET 2 AA8 3 GLU B 209 LEU B 213 1 O THR B 211 N GLY B 163 SHEET 3 AA8 3 ARG B 247 THR B 251 1 O ARG B 249 N LEU B 212 SHEET 1 AA9 2 MET B 168 ARG B 169 0 SHEET 2 AA9 2 ARG B 188 SER B 189 -1 O ARG B 188 N ARG B 169 SHEET 1 AB1 2 ARG B 221 GLU B 223 0 SHEET 2 AB1 2 THR B 229 THR B 231 -1 O ILE B 230 N PHE B 222 SHEET 1 AB2 3 HIS B 275 HIS B 277 0 SHEET 2 AB2 3 GLY B 315 SER B 322 1 O GLY B 315 N ILE B 276 SHEET 3 AB2 3 SER B 346 LYS B 351 1 O PHE B 348 N THR B 318 SHEET 1 AB3 6 THR B 399 VAL B 407 0 SHEET 2 AB3 6 GLN B 414 ARG B 418 -1 O PHE B 416 N GLY B 406 SHEET 3 AB3 6 VAL B 424 ASP B 428 -1 O VAL B 425 N GLY B 417 SHEET 4 AB3 6 LEU B 450 GLU B 454 1 O LEU B 450 N VAL B 424 SHEET 5 AB3 6 PHE B 437 SER B 445 -1 N THR B 443 O LYS B 451 SHEET 6 AB3 6 THR B 399 VAL B 407 -1 N VAL B 402 O VAL B 438 LINK O3' A D 36 P ZJS D 37 1555 1555 1.58 LINK O3' ZJS D 37 P A D 38 1555 1555 1.59 LINK O3' A M 36 P ZJS M 37 1555 1555 1.61 LINK O3' ZJS M 37 P A M 38 1555 1555 1.61 LINK SG CYS A 27 FE3 F3S A 501 1555 1555 2.35 LINK SG CYS A 63 FE4 F3S A 501 1555 1555 2.32 LINK SG CYS A 97 FE1 F3S A 501 1555 1555 2.36 LINK SG CYS A 171 FE4 SF4 A 502 1555 1555 2.25 LINK SG CYS A 175 FE2 SF4 A 502 1555 1555 2.31 LINK SG CYS A 178 FE1 SF4 A 502 1555 1555 2.33 LINK O ILE A 266 NA NA A 505 1555 1555 2.29 LINK O MET A 269 NA NA A 505 1555 1555 2.33 LINK O VAL A 272 NA NA A 505 1555 1555 2.33 LINK FE3 SF4 A 502 N MET A 504 1555 1555 2.19 LINK FE3 SF4 A 502 SD MET A 504 1555 1555 2.58 LINK FE3 SF4 A 502 OXT MET A 504 1555 1555 2.22 LINK NA NA A 505 O HOH A 803 1555 1555 2.52 LINK NA NA A 505 O HOH A 807 1555 1555 2.34 LINK SG CYS B 27 FE3 F3S B 602 1555 1555 2.38 LINK SG CYS B 63 FE4 F3S B 602 1555 1555 2.30 LINK SG CYS B 97 FE1 F3S B 602 1555 1555 2.37 LINK SG CYS B 171 FE3 SF4 B 603 1555 1555 2.28 LINK SG CYS B 175 FE4 SF4 B 603 1555 1555 2.31 LINK SG CYS B 178 FE1 SF4 B 603 1555 1555 2.30 LINK O ILE B 266 NA NA B 606 1555 1555 2.28 LINK O MET B 269 NA NA B 606 1555 1555 2.30 LINK O VAL B 272 NA NA B 606 1555 1555 2.35 LINK FE2 SF4 B 603 N MET B 605 1555 1555 2.23 LINK FE2 SF4 B 603 O MET B 605 1555 1555 2.19 LINK FE2 SF4 B 603 SD MET B 605 1555 1555 2.62 LINK NA NA B 606 O HOH B 722 1555 1555 2.43 LINK NA NA B 606 O HOH B 948 1555 1555 2.39 LINK O2' C M 32 NA NA M 101 1555 1555 2.37 LINK O2 C M 32 NA NA M 101 1555 1555 2.52 LINK NA NA M 101 O HOH M 234 1555 1555 2.34 LINK NA NA M 101 O HOH M 254 1555 1555 2.35 LINK NA NA M 101 O HOH M 259 1555 1555 2.35 CISPEP 1 THR A 251 THR A 252 0 -3.99 CISPEP 2 THR B 251 THR B 252 0 -11.87 CRYST1 68.690 97.120 80.606 90.00 108.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014558 0.000000 0.004758 0.00000 SCALE2 0.000000 0.010297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013052 0.00000