HEADER IMMUNE SYSTEM 28-APR-21 7MLM
TITLE CRYSTAL STRUCTURE OF MOUSE TLR4/MD-2 IN COMPLEX WITH SULFATIDES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4,VARIABLE LYMPHOCYTE RECEPTOR B;
COMPND 3 CHAIN: A;
COMPND 4 EC: 3.2.2.6;
COMPND 5 ENGINEERED: YES;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: LYMPHOCYTE ANTIGEN 96;
COMPND 8 CHAIN: C;
COMPND 9 SYNONYM: LY-96,ESOP-1,PROTEIN MD-2;
COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, EPTATRETUS BURGERI;
SOURCE 3 ORGANISM_COMMON: MOUSE, INSHORE HAGFISH;
SOURCE 4 ORGANISM_TAXID: 10090, 7764;
SOURCE 5 GENE: TLR4, LPS, VLRB;
SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111;
SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE (BTI-TN-5B1-4);
SOURCE 9 MOL_ID: 2;
SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 11 ORGANISM_COMMON: MOUSE;
SOURCE 12 ORGANISM_TAXID: 10090;
SOURCE 13 GENE: LY96, ESOP1, MD2;
SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI;
SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7111;
SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE (BTI-TN-5B1-4)
KEYWDS INNATE IMMUNITY, ENDOGENOUS LIGANDS, TOLL-LIKE RECEPTORS, IMMUNE
KEYWDS 2 SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR L.SU,B.BEUTLER
REVDAT 4 06-NOV-24 7MLM 1 REMARK
REVDAT 3 18-OCT-23 7MLM 1 REMARK
REVDAT 2 25-AUG-21 7MLM 1 JRNL
REVDAT 1 28-JUL-21 7MLM 0
JRNL AUTH L.SU,M.ATHAMNA,Y.WANG,J.WANG,M.FREUDENBERG,T.YUE,J.WANG,
JRNL AUTH 2 E.M.Y.MORESCO,H.HE,T.ZOR,B.BEUTLER
JRNL TITL SULFATIDES ARE ENDOGENOUS LIGANDS FOR THE TLR4-MD-2 COMPLEX.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021
JRNL REFN ESSN 1091-6490
JRNL PMID 34290146
JRNL DOI 10.1073/PNAS.2105316118
REMARK 2
REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.15.2_3472
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.40
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 75.1
REMARK 3 NUMBER OF REFLECTIONS : 46679
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.211
REMARK 3 R VALUE (WORKING SET) : 0.210
REMARK 3 FREE R VALUE : 0.244
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.280
REMARK 3 FREE R VALUE TEST SET COUNT : 2000
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 46.3960 - 5.0678 0.98 4368 196 0.2145 0.2349
REMARK 3 2 5.0678 - 4.0232 1.00 4302 192 0.1612 0.1809
REMARK 3 3 4.0232 - 3.5149 0.98 4210 188 0.1694 0.2068
REMARK 3 4 3.5149 - 3.1936 1.00 4224 190 0.2137 0.2591
REMARK 3 5 3.1936 - 2.9647 1.00 4222 189 0.2243 0.2612
REMARK 3 6 2.9647 - 2.7899 0.98 4150 186 0.2414 0.3086
REMARK 3 7 2.7899 - 2.6502 0.97 4142 184 0.2450 0.2518
REMARK 3 8 2.6502 - 2.5349 0.93 3941 177 0.2491 0.3074
REMARK 3 9 2.5349 - 2.4373 0.77 3233 145 0.2497 0.2611
REMARK 3 10 2.4373 - 2.3532 0.57 2415 108 0.2536 0.2838
REMARK 3 11 2.3532 - 2.2796 0.43 1813 81 0.2497 0.3046
REMARK 3 12 2.2796 - 2.2145 0.35 1466 66 0.2454 0.2764
REMARK 3 13 2.2145 - 2.1562 0.29 1219 55 0.2364 0.2697
REMARK 3 14 2.1562 - 2.1040 0.23 974 43 0.2403 0.3793
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.630
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.55
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 14
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ( CHAIN A AND RESID 27:59 )
REMARK 3 ORIGIN FOR THE GROUP (A): 45.317 47.573 12.060
REMARK 3 T TENSOR
REMARK 3 T11: 0.2034 T22: 0.5249
REMARK 3 T33: 0.6422 T12: -0.0122
REMARK 3 T13: 0.1045 T23: -0.0959
REMARK 3 L TENSOR
REMARK 3 L11: 0.9034 L22: 0.0628
REMARK 3 L33: 2.4824 L12: 0.0027
REMARK 3 L13: -1.4726 L23: -0.0748
REMARK 3 S TENSOR
REMARK 3 S11: 0.0876 S12: 0.0045 S13: 0.1946
REMARK 3 S21: 0.0123 S22: -0.0021 S23: -0.3738
REMARK 3 S31: -0.1150 S32: 0.6806 S33: -0.0582
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: ( CHAIN A AND RESID 60:260 )
REMARK 3 ORIGIN FOR THE GROUP (A): 17.899 46.765 8.321
REMARK 3 T TENSOR
REMARK 3 T11: 0.1599 T22: 0.2153
REMARK 3 T33: 0.2109 T12: 0.0381
REMARK 3 T13: 0.1089 T23: -0.0306
REMARK 3 L TENSOR
REMARK 3 L11: 0.7332 L22: 1.1305
REMARK 3 L33: 1.0863 L12: 0.0002
REMARK 3 L13: 0.2367 L23: 0.3294
REMARK 3 S TENSOR
REMARK 3 S11: 0.0414 S12: 0.2357 S13: 0.1193
REMARK 3 S21: -0.0836 S22: -0.0720 S23: 0.1056
REMARK 3 S31: -0.1074 S32: -0.0469 S33: 0.0195
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: ( CHAIN A AND RESID 261:346 )
REMARK 3 ORIGIN FOR THE GROUP (A): 7.729 19.655 2.163
REMARK 3 T TENSOR
REMARK 3 T11: 0.3794 T22: 0.3692
REMARK 3 T33: 0.3511 T12: -0.0679
REMARK 3 T13: 0.0959 T23: -0.1411
REMARK 3 L TENSOR
REMARK 3 L11: 0.8566 L22: 0.9934
REMARK 3 L33: 0.7670 L12: -0.3845
REMARK 3 L13: 0.0171 L23: 0.3322
REMARK 3 S TENSOR
REMARK 3 S11: -0.1259 S12: 0.0607 S13: -0.1890
REMARK 3 S21: 0.1461 S22: -0.1229 S23: 0.5100
REMARK 3 S31: 0.5188 S32: -0.4672 S33: 0.1626
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: ( CHAIN A AND RESID 347:433 )
REMARK 3 ORIGIN FOR THE GROUP (A): 23.116 9.087 -10.397
REMARK 3 T TENSOR
REMARK 3 T11: 0.5263 T22: 0.1047
REMARK 3 T33: 0.0500 T12: 0.0104
REMARK 3 T13: 0.1279 T23: -0.2605
REMARK 3 L TENSOR
REMARK 3 L11: 0.3459 L22: 0.6458
REMARK 3 L33: 0.7694 L12: -0.2932
REMARK 3 L13: -0.1219 L23: 0.3317
REMARK 3 S TENSOR
REMARK 3 S11: -0.4523 S12: 0.1689 S13: -0.1303
REMARK 3 S21: 0.4127 S22: 0.1330 S23: 0.1743
REMARK 3 S31: 0.4338 S32: -0.4086 S33: 0.0219
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: ( CHAIN A AND RESID 434:466 )
REMARK 3 ORIGIN FOR THE GROUP (A): 37.157 3.690 -15.402
REMARK 3 T TENSOR
REMARK 3 T11: 0.3150 T22: 0.1341
REMARK 3 T33: 0.2015 T12: -0.0118
REMARK 3 T13: 0.0421 T23: -0.0467
REMARK 3 L TENSOR
REMARK 3 L11: 2.2630 L22: 2.2272
REMARK 3 L33: 2.6829 L12: -0.7292
REMARK 3 L13: 0.7051 L23: 0.5456
REMARK 3 S TENSOR
REMARK 3 S11: -0.2274 S12: -0.0204 S13: -0.1440
REMARK 3 S21: 0.3071 S22: 0.0235 S23: -0.2388
REMARK 3 S31: 0.2875 S32: -0.0575 S33: 0.1194
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: ( CHAIN A AND RESID 467:563 )
REMARK 3 ORIGIN FOR THE GROUP (A): 52.534 9.819 -14.764
REMARK 3 T TENSOR
REMARK 3 T11: 0.3196 T22: 0.1442
REMARK 3 T33: 0.4281 T12: 0.0197
REMARK 3 T13: -0.1408 T23: 0.0303
REMARK 3 L TENSOR
REMARK 3 L11: 0.9133 L22: 0.1768
REMARK 3 L33: 0.6235 L12: -0.0105
REMARK 3 L13: -0.1519 L23: -0.1849
REMARK 3 S TENSOR
REMARK 3 S11: -0.2872 S12: -0.0190 S13: -0.0414
REMARK 3 S21: 0.2113 S22: -0.0070 S23: -0.5149
REMARK 3 S31: 0.0472 S32: 0.1846 S33: 0.0856
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: ( CHAIN A AND RESID 564:618 )
REMARK 3 ORIGIN FOR THE GROUP (A): 67.607 18.781 -7.967
REMARK 3 T TENSOR
REMARK 3 T11: 0.3753 T22: 0.2207
REMARK 3 T33: 0.8911 T12: -0.1740
REMARK 3 T13: -0.7706 T23: -0.0821
REMARK 3 L TENSOR
REMARK 3 L11: 0.3207 L22: 0.4426
REMARK 3 L33: 0.4282 L12: -0.2235
REMARK 3 L13: -0.0762 L23: -0.2749
REMARK 3 S TENSOR
REMARK 3 S11: -0.1936 S12: -0.0865 S13: 0.1690
REMARK 3 S21: 0.2053 S22: -0.0145 S23: -0.4679
REMARK 3 S31: -0.1390 S32: 0.2799 S33: -0.0444
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: ( CHAIN C AND RESID 21:44 )
REMARK 3 ORIGIN FOR THE GROUP (A): 35.079 22.738 31.554
REMARK 3 T TENSOR
REMARK 3 T11: 0.7715 T22: 0.2710
REMARK 3 T33: 0.3023 T12: 0.0808
REMARK 3 T13: -0.2137 T23: -0.2197
REMARK 3 L TENSOR
REMARK 3 L11: 0.7864 L22: 2.8154
REMARK 3 L33: 0.1335 L12: 1.1780
REMARK 3 L13: -0.2937 L23: -0.3575
REMARK 3 S TENSOR
REMARK 3 S11: 0.0223 S12: -0.1871 S13: -0.0800
REMARK 3 S21: 0.2451 S22: 0.1015 S23: -0.2012
REMARK 3 S31: 0.2067 S32: 0.1632 S33: -0.1156
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: ( CHAIN C AND RESID 45:55 )
REMARK 3 ORIGIN FOR THE GROUP (A): 24.460 16.034 31.203
REMARK 3 T TENSOR
REMARK 3 T11: 0.4415 T22: 0.1921
REMARK 3 T33: 0.2970 T12: 0.0125
REMARK 3 T13: 0.0609 T23: -0.0337
REMARK 3 L TENSOR
REMARK 3 L11: 6.7115 L22: 1.8746
REMARK 3 L33: 5.6376 L12: 0.2662
REMARK 3 L13: 0.7956 L23: 3.1375
REMARK 3 S TENSOR
REMARK 3 S11: -0.1542 S12: -0.2881 S13: -0.3120
REMARK 3 S21: 0.5467 S22: 0.1052 S23: 0.5547
REMARK 3 S31: 0.1696 S32: -0.2194 S33: 0.0225
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: ( CHAIN C AND RESID 56:82 )
REMARK 3 ORIGIN FOR THE GROUP (A): 29.912 24.262 20.001
REMARK 3 T TENSOR
REMARK 3 T11: 0.2646 T22: 0.1727
REMARK 3 T33: 0.2139 T12: 0.0291
REMARK 3 T13: -0.0100 T23: -0.0613
REMARK 3 L TENSOR
REMARK 3 L11: 0.6929 L22: 1.9883
REMARK 3 L33: 1.1680 L12: -0.0502
REMARK 3 L13: -0.1949 L23: -0.3569
REMARK 3 S TENSOR
REMARK 3 S11: 0.1573 S12: 0.0054 S13: -0.0300
REMARK 3 S21: 0.3761 S22: 0.0627 S23: -0.0546
REMARK 3 S31: 0.1266 S32: 0.0141 S33: -0.1126
REMARK 3 TLS GROUP : 11
REMARK 3 SELECTION: ( CHAIN C AND RESID 83:102 )
REMARK 3 ORIGIN FOR THE GROUP (A): 31.450 17.647 14.220
REMARK 3 T TENSOR
REMARK 3 T11: 0.2656 T22: 0.2299
REMARK 3 T33: 0.2915 T12: 0.0563
REMARK 3 T13: -0.0575 T23: -0.0924
REMARK 3 L TENSOR
REMARK 3 L11: 1.2727 L22: 2.8483
REMARK 3 L33: 0.8741 L12: -1.4165
REMARK 3 L13: 0.1149 L23: -1.1741
REMARK 3 S TENSOR
REMARK 3 S11: 0.1520 S12: 0.0238 S13: 0.0453
REMARK 3 S21: 0.2959 S22: -0.0585 S23: -0.1369
REMARK 3 S31: 0.1618 S32: 0.0900 S33: -0.0799
REMARK 3 TLS GROUP : 12
REMARK 3 SELECTION: ( CHAIN C AND RESID 103:143 )
REMARK 3 ORIGIN FOR THE GROUP (A): 29.378 21.413 20.784
REMARK 3 T TENSOR
REMARK 3 T11: 0.3501 T22: 0.2045
REMARK 3 T33: 0.2268 T12: 0.0031
REMARK 3 T13: -0.0852 T23: -0.1023
REMARK 3 L TENSOR
REMARK 3 L11: 0.7703 L22: 2.9302
REMARK 3 L33: 0.8237 L12: -0.4752
REMARK 3 L13: -0.2880 L23: -1.0479
REMARK 3 S TENSOR
REMARK 3 S11: 0.1756 S12: 0.0603 S13: 0.0813
REMARK 3 S21: 0.3961 S22: 0.0478 S23: -0.2402
REMARK 3 S31: 0.2590 S32: 0.1399 S33: -0.0395
REMARK 3 TLS GROUP : 13
REMARK 3 SELECTION: ( CHAIN C AND RESID 144:156 )
REMARK 3 ORIGIN FOR THE GROUP (A): 36.291 19.584 26.359
REMARK 3 T TENSOR
REMARK 3 T11: 0.3441 T22: 0.2340
REMARK 3 T33: 0.3064 T12: 0.0062
REMARK 3 T13: -0.1559 T23: -0.1592
REMARK 3 L TENSOR
REMARK 3 L11: 1.6095 L22: 2.2112
REMARK 3 L33: 1.5542 L12: -0.2941
REMARK 3 L13: 0.9736 L23: 1.2680
REMARK 3 S TENSOR
REMARK 3 S11: 0.2032 S12: -0.1335 S13: 0.0156
REMARK 3 S21: 0.3795 S22: 0.0083 S23: -0.0639
REMARK 3 S31: 0.0674 S32: 0.1213 S33: -0.0282
REMARK 3 TLS GROUP : 14
REMARK 3 SELECTION: ( CHAIN A AND RESID 703:704 ) OR ( CHAIN C AND RESID
REMARK 3 203:203 )
REMARK 3 ORIGIN FOR THE GROUP (A): 25.242 12.278 17.039
REMARK 3 T TENSOR
REMARK 3 T11: 0.5176 T22: 0.4973
REMARK 3 T33: 0.5096 T12: 0.0244
REMARK 3 T13: -0.0574 T23: 0.0274
REMARK 3 L TENSOR
REMARK 3 L11: 0.0008 L22: 0.0040
REMARK 3 L33: -0.0006 L12: -0.0077
REMARK 3 L13: 0.0013 L23: 0.0019
REMARK 3 S TENSOR
REMARK 3 S11: 0.0465 S12: 0.0694 S13: -0.0095
REMARK 3 S21: -0.0802 S22: 0.0822 S23: 0.0676
REMARK 3 S31: 0.0472 S32: -0.0829 S33: 0.0001
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7MLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-21.
REMARK 100 THE DEPOSITION ID IS D_1000256336.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-JUL-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 19-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58410
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2
REMARK 200 DATA REDUNDANCY : 11.90
REMARK 200 R MERGE (I) : 0.10100
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14
REMARK 200 COMPLETENESS FOR SHELL (%) : 64.8
REMARK 200 DATA REDUNDANCY IN SHELL : 6.90
REMARK 200 R MERGE FOR SHELL (I) : 1.13400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: 5IJC
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 57.03
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH8.0, 0.8 M SODIUM
REMARK 280 FORMATE, 8% PEG 8000, 8% PEG 1000, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 293.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.64800
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.64800
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 72.54700
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.14650
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 72.54700
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.14650
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.64800
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 72.54700
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 82.14650
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.64800
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 72.54700
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 82.14650
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 17870 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 59030 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 6590 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 31860 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 15.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -15
REMARK 465 LEU A -14
REMARK 465 LEU A -13
REMARK 465 VAL A -12
REMARK 465 ASN A -11
REMARK 465 GLN A -10
REMARK 465 SER A -9
REMARK 465 HIS A -8
REMARK 465 GLN A -7
REMARK 465 GLY A -6
REMARK 465 PHE A -5
REMARK 465 ASN A -4
REMARK 465 LYS A -3
REMARK 465 GLU A -2
REMARK 465 HIS A -1
REMARK 465 THR A 0
REMARK 465 SER A 1
REMARK 465 LYS A 2
REMARK 465 MET A 3
REMARK 465 VAL A 4
REMARK 465 SER A 5
REMARK 465 ALA A 6
REMARK 465 ILE A 7
REMARK 465 VAL A 8
REMARK 465 LEU A 9
REMARK 465 TYR A 10
REMARK 465 VAL A 11
REMARK 465 LEU A 12
REMARK 465 LEU A 13
REMARK 465 ALA A 14
REMARK 465 ALA A 15
REMARK 465 ALA A 16
REMARK 465 ALA A 17
REMARK 465 HIS A 18
REMARK 465 SER A 19
REMARK 465 ALA A 20
REMARK 465 PHE A 21
REMARK 465 ALA A 22
REMARK 465 ALA A 23
REMARK 465 ASP A 24
REMARK 465 PRO A 25
REMARK 465 ASN A 26
REMARK 465 GLY A 607
REMARK 465 SER A 608
REMARK 465 THR A 619
REMARK 465 MET C -22
REMARK 465 LEU C -21
REMARK 465 LEU C -20
REMARK 465 VAL C -19
REMARK 465 ASN C -18
REMARK 465 GLN C -17
REMARK 465 SER C -16
REMARK 465 HIS C -15
REMARK 465 GLN C -14
REMARK 465 GLY C -13
REMARK 465 PHE C -12
REMARK 465 ASN C -11
REMARK 465 LYS C -10
REMARK 465 GLU C -9
REMARK 465 HIS C -8
REMARK 465 THR C -7
REMARK 465 SER C -6
REMARK 465 LYS C -5
REMARK 465 MET C -4
REMARK 465 VAL C -3
REMARK 465 SER C -2
REMARK 465 ALA C -1
REMARK 465 ILE C 0
REMARK 465 VAL C 1
REMARK 465 LEU C 2
REMARK 465 TYR C 3
REMARK 465 VAL C 4
REMARK 465 LEU C 5
REMARK 465 LEU C 6
REMARK 465 ALA C 7
REMARK 465 ALA C 8
REMARK 465 ALA C 9
REMARK 465 ALA C 10
REMARK 465 HIS C 11
REMARK 465 SER C 12
REMARK 465 ALA C 13
REMARK 465 PHE C 14
REMARK 465 ALA C 15
REMARK 465 ALA C 16
REMARK 465 ASP C 17
REMARK 465 PRO C 18
REMARK 465 GLU C 19
REMARK 465 LYS C 20
REMARK 465 ARG C 157
REMARK 465 ASP C 158
REMARK 465 VAL C 159
REMARK 465 ASN C 160
REMARK 465 LEU C 161
REMARK 465 VAL C 162
REMARK 465 PRO C 163
REMARK 465 ARG C 164
REMARK 465 GLY C 165
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 ND2 ASN A 492 O5 NAG A 701 2.07
REMARK 500 O4 NAG D 1 O5 NAG D 2 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 34 15.05 59.68
REMARK 500 ILE A 35 -53.09 -130.21
REMARK 500 LYS A 66 -36.53 71.87
REMARK 500 LEU A 100 55.31 -93.19
REMARK 500 GLN A 114 -73.00 64.21
REMARK 500 ASN A 159 -154.91 -121.77
REMARK 500 ASN A 184 -157.57 -119.50
REMARK 500 ASN A 200 78.58 -118.52
REMARK 500 HIS A 228 -72.30 -72.87
REMARK 500 THR A 290 -167.80 -111.66
REMARK 500 SER A 317 41.79 -78.59
REMARK 500 ASN A 415 53.09 -98.16
REMARK 500 ASP A 460 16.12 -140.28
REMARK 500 LEU A 468 58.19 -90.06
REMARK 500 ASN A 479 -152.77 -103.91
REMARK 500 ASP A 483 16.35 58.79
REMARK 500 ASN A 528 -165.05 -112.19
REMARK 500 ASN A 552 -155.38 -121.68
REMARK 500 CYS A 580 54.81 -99.04
REMARK 500 SER A 614 55.90 -114.46
REMARK 500
REMARK 500 REMARK: NULL
DBREF 7MLM A 26 544 UNP Q9QUK6 TLR4_MOUSE 26 544
DBREF 7MLM A 545 619 UNP Q4G1L2 Q4G1L2_EPTBU 126 200
DBREF 7MLM C 19 160 UNP Q9JHF9 LY96_MOUSE 19 160
SEQADV 7MLM MET A -15 UNP Q9QUK6 INITIATING METHIONINE
SEQADV 7MLM LEU A -14 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM LEU A -13 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM VAL A -12 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM ASN A -11 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM GLN A -10 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM SER A -9 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM HIS A -8 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM GLN A -7 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM GLY A -6 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM PHE A -5 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM ASN A -4 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM LYS A -3 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM GLU A -2 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM HIS A -1 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM THR A 0 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM SER A 1 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM LYS A 2 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM MET A 3 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM VAL A 4 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM SER A 5 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM ALA A 6 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM ILE A 7 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM VAL A 8 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM LEU A 9 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM TYR A 10 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM VAL A 11 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM LEU A 12 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM LEU A 13 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM ALA A 14 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM ALA A 15 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM ALA A 16 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM ALA A 17 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM HIS A 18 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM SER A 19 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM ALA A 20 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM PHE A 21 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM ALA A 22 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM ALA A 23 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM ASP A 24 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM PRO A 25 UNP Q9QUK6 EXPRESSION TAG
SEQADV 7MLM MET C -22 UNP Q9JHF9 INITIATING METHIONINE
SEQADV 7MLM LEU C -21 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM LEU C -20 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM VAL C -19 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ASN C -18 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM GLN C -17 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM SER C -16 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM HIS C -15 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM GLN C -14 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM GLY C -13 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM PHE C -12 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ASN C -11 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM LYS C -10 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM GLU C -9 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM HIS C -8 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM THR C -7 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM SER C -6 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM LYS C -5 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM MET C -4 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM VAL C -3 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM SER C -2 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ALA C -1 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ILE C 0 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM VAL C 1 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM LEU C 2 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM TYR C 3 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM VAL C 4 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM LEU C 5 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM LEU C 6 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ALA C 7 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ALA C 8 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ALA C 9 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ALA C 10 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM HIS C 11 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM SER C 12 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ALA C 13 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM PHE C 14 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ALA C 15 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ALA C 16 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ASP C 17 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM PRO C 18 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM LEU C 161 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM VAL C 162 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM PRO C 163 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM ARG C 164 UNP Q9JHF9 EXPRESSION TAG
SEQADV 7MLM GLY C 165 UNP Q9JHF9 EXPRESSION TAG
SEQRES 1 A 635 MET LEU LEU VAL ASN GLN SER HIS GLN GLY PHE ASN LYS
SEQRES 2 A 635 GLU HIS THR SER LYS MET VAL SER ALA ILE VAL LEU TYR
SEQRES 3 A 635 VAL LEU LEU ALA ALA ALA ALA HIS SER ALA PHE ALA ALA
SEQRES 4 A 635 ASP PRO ASN PRO CYS ILE GLU VAL VAL PRO ASN ILE THR
SEQRES 5 A 635 TYR GLN CYS MET ASP GLN LYS LEU SER LYS VAL PRO ASP
SEQRES 6 A 635 ASP ILE PRO SER SER THR LYS ASN ILE ASP LEU SER PHE
SEQRES 7 A 635 ASN PRO LEU LYS ILE LEU LYS SER TYR SER PHE SER ASN
SEQRES 8 A 635 PHE SER GLU LEU GLN TRP LEU ASP LEU SER ARG CYS GLU
SEQRES 9 A 635 ILE GLU THR ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS
SEQRES 10 A 635 HIS LEU SER ASN LEU ILE LEU THR GLY ASN PRO ILE GLN
SEQRES 11 A 635 SER PHE SER PRO GLY SER PHE SER GLY LEU THR SER LEU
SEQRES 12 A 635 GLU ASN LEU VAL ALA VAL GLU THR LYS LEU ALA SER LEU
SEQRES 13 A 635 GLU SER PHE PRO ILE GLY GLN LEU ILE THR LEU LYS LYS
SEQRES 14 A 635 LEU ASN VAL ALA HIS ASN PHE ILE HIS SER CYS LYS LEU
SEQRES 15 A 635 PRO ALA TYR PHE SER ASN LEU THR ASN LEU VAL HIS VAL
SEQRES 16 A 635 ASP LEU SER TYR ASN TYR ILE GLN THR ILE THR VAL ASN
SEQRES 17 A 635 ASP LEU GLN PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU
SEQRES 18 A 635 SER LEU ASP MET SER LEU ASN PRO ILE ASP PHE ILE GLN
SEQRES 19 A 635 ASP GLN ALA PHE GLN GLY ILE LYS LEU HIS GLU LEU THR
SEQRES 20 A 635 LEU ARG GLY ASN PHE ASN SER SER ASN ILE MET LYS THR
SEQRES 21 A 635 CYS LEU GLN ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU
SEQRES 22 A 635 ILE LEU GLY GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE
SEQRES 23 A 635 PHE GLU PRO SER ILE MET GLU GLY LEU CYS ASP VAL THR
SEQRES 24 A 635 ILE ASP GLU PHE ARG LEU THR TYR THR ASN ASP PHE SER
SEQRES 25 A 635 ASP ASP ILE VAL LYS PHE HIS CYS LEU ALA ASN VAL SER
SEQRES 26 A 635 ALA MET SER LEU ALA GLY VAL SER ILE LYS TYR LEU GLU
SEQRES 27 A 635 ASP VAL PRO LYS HIS PHE LYS TRP GLN SER LEU SER ILE
SEQRES 28 A 635 ILE ARG CYS GLN LEU LYS GLN PHE PRO THR LEU ASP LEU
SEQRES 29 A 635 PRO PHE LEU LYS SER LEU THR LEU THR MET ASN LYS GLY
SEQRES 30 A 635 SER ILE SER PHE LYS LYS VAL ALA LEU PRO SER LEU SER
SEQRES 31 A 635 TYR LEU ASP LEU SER ARG ASN ALA LEU SER PHE SER GLY
SEQRES 32 A 635 CYS CYS SER TYR SER ASP LEU GLY THR ASN SER LEU ARG
SEQRES 33 A 635 HIS LEU ASP LEU SER PHE ASN GLY ALA ILE ILE MET SER
SEQRES 34 A 635 ALA ASN PHE MET GLY LEU GLU GLU LEU GLN HIS LEU ASP
SEQRES 35 A 635 PHE GLN HIS SER THR LEU LYS ARG VAL THR GLU PHE SER
SEQRES 36 A 635 ALA PHE LEU SER LEU GLU LYS LEU LEU TYR LEU ASP ILE
SEQRES 37 A 635 SER TYR THR ASN THR LYS ILE ASP PHE ASP GLY ILE PHE
SEQRES 38 A 635 LEU GLY LEU THR SER LEU ASN THR LEU LYS MET ALA GLY
SEQRES 39 A 635 ASN SER PHE LYS ASP ASN THR LEU SER ASN VAL PHE ALA
SEQRES 40 A 635 ASN THR THR ASN LEU THR PHE LEU ASP LEU SER LYS CYS
SEQRES 41 A 635 GLN LEU GLU GLN ILE SER TRP GLY VAL PHE ASP THR LEU
SEQRES 42 A 635 HIS ARG LEU GLN LEU LEU ASN MET SER HIS ASN ASN LEU
SEQRES 43 A 635 LEU PHE LEU ASP SER SER HIS TYR ASN GLN LEU TYR SER
SEQRES 44 A 635 LEU LYS GLU LEU ALA LEU ASP THR ASN GLN LEU LYS SER
SEQRES 45 A 635 VAL PRO ASP GLY ILE PHE ASP ARG LEU THR SER LEU GLN
SEQRES 46 A 635 LYS ILE TRP LEU HIS THR ASN PRO TRP ASP CYS SER CYS
SEQRES 47 A 635 PRO ARG ILE ASP TYR LEU SER ARG TRP LEU ASN LYS ASN
SEQRES 48 A 635 SER GLN LYS GLU GLN GLY SER ALA LYS CYS SER GLY SER
SEQRES 49 A 635 GLY LYS PRO VAL ARG SER ILE ILE CYS PRO THR
SEQRES 1 C 188 MET LEU LEU VAL ASN GLN SER HIS GLN GLY PHE ASN LYS
SEQRES 2 C 188 GLU HIS THR SER LYS MET VAL SER ALA ILE VAL LEU TYR
SEQRES 3 C 188 VAL LEU LEU ALA ALA ALA ALA HIS SER ALA PHE ALA ALA
SEQRES 4 C 188 ASP PRO GLU LYS GLN GLN TRP PHE CYS ASN SER SER ASP
SEQRES 5 C 188 ALA ILE ILE SER TYR SER TYR CYS ASP HIS LEU LYS PHE
SEQRES 6 C 188 PRO ILE SER ILE SER SER GLU PRO CYS ILE ARG LEU ARG
SEQRES 7 C 188 GLY THR ASN GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG
SEQRES 8 C 188 GLY ASN LEU LYS TYR LEU TYR PHE ASN LEU PHE ILE SER
SEQRES 9 C 188 VAL ASN SER ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU
SEQRES 10 C 188 CYS HIS GLY HIS ASP ASP ASP TYR SER PHE CYS ARG ALA
SEQRES 11 C 188 LEU LYS GLY GLU THR VAL ASN THR SER ILE PRO PHE SER
SEQRES 12 C 188 PHE GLU GLY ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS
SEQRES 13 C 188 VAL ALA GLU ALA ILE ALA GLY ASP THR GLU GLU LYS LEU
SEQRES 14 C 188 PHE CYS LEU ASN PHE THR ILE ILE HIS ARG ARG ASP VAL
SEQRES 15 C 188 ASN LEU VAL PRO ARG GLY
HET NAG B 1 14
HET NAG B 2 14
HET NAG D 1 14
HET NAG D 2 14
HET NAG D 3 14
HET NAG A 701 14
HET NAG A 702 14
HET ZKM A 703 53
HET ZKM A 704 53
HET NAG C 201 14
HET NAG C 202 14
HET ZKM C 203 53
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM ZKM N-[(1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-
HETNAM 2 ZKM GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-EN-1-YL]-
HETNAM 3 ZKM HEXADECANAMIDE
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
FORMUL 3 NAG 9(C8 H15 N O6)
FORMUL 7 ZKM 3(C40 H77 N O11 S)
FORMUL 12 HOH *262(H2 O)
HELIX 1 AA1 PRO A 167 ASN A 172 5 6
HELIX 2 AA2 VAL A 191 ASP A 193 5 3
HELIX 3 AA3 LEU A 194 ASN A 200 1 7
HELIX 4 AA4 SER A 238 ASN A 248 1 11
HELIX 5 AA5 GLU A 272 VAL A 282 5 11
HELIX 6 AA6 SER A 296 ALA A 306 5 11
HELIX 7 AA7 SER A 390 GLY A 395 1 6
HELIX 8 AA8 ASP A 534 ASN A 539 5 6
HELIX 9 AA9 ILE A 585 ASN A 595 1 11
HELIX 10 AB1 PRO A 611 ILE A 615 5 5
HELIX 11 AB2 TYR C 102 ALA C 107 5 6
SHEET 1 AA125 ILE A 29 VAL A 32 0
SHEET 2 AA125 THR A 36 GLN A 38 -1 O GLN A 38 N ILE A 29
SHEET 3 AA125 ASN A 57 ASP A 59 1 O ASN A 57 N TYR A 37
SHEET 4 AA125 TRP A 81 ASP A 83 1 O ASP A 83 N ILE A 58
SHEET 5 AA125 ASN A 105 ILE A 107 1 O ILE A 107 N LEU A 82
SHEET 6 AA125 ASN A 129 VAL A 131 1 O VAL A 131 N LEU A 106
SHEET 7 AA125 LYS A 153 ASN A 155 1 O ASN A 155 N LEU A 130
SHEET 8 AA125 HIS A 178 ASP A 180 1 O ASP A 180 N LEU A 154
SHEET 9 AA125 SER A 206 ASP A 208 1 O SER A 206 N VAL A 179
SHEET 10 AA125 LYS A 226 ARG A 233 1 O GLU A 229 N LEU A 207
SHEET 11 AA125 HIS A 253 GLY A 260 1 O ILE A 258 N LEU A 232
SHEET 12 AA125 THR A 283 LEU A 289 1 O ARG A 288 N LEU A 257
SHEET 13 AA125 ALA A 310 ALA A 314 1 O ALA A 310 N PHE A 287
SHEET 14 AA125 SER A 332 ILE A 336 1 O SER A 334 N LEU A 313
SHEET 15 AA125 SER A 353 THR A 357 1 O THR A 355 N ILE A 335
SHEET 16 AA125 TYR A 375 ASP A 377 1 O ASP A 377 N LEU A 356
SHEET 17 AA125 HIS A 401 ASP A 403 1 O ASP A 403 N LEU A 376
SHEET 18 AA125 HIS A 424 ASP A 426 1 O HIS A 424 N LEU A 402
SHEET 19 AA125 TYR A 449 ASP A 451 1 O TYR A 449 N LEU A 425
SHEET 20 AA125 THR A 473 LYS A 475 1 O LYS A 475 N LEU A 450
SHEET 21 AA125 PHE A 498 ASP A 500 1 O PHE A 498 N LEU A 474
SHEET 22 AA125 LEU A 522 ASN A 524 1 O ASN A 524 N LEU A 499
SHEET 23 AA125 GLU A 546 ALA A 548 1 O ALA A 548 N LEU A 523
SHEET 24 AA125 LYS A 570 TRP A 572 1 O TRP A 572 N LEU A 547
SHEET 25 AA125 GLU A 599 GLN A 600 1 O GLN A 600 N ILE A 571
SHEET 1 AA2 2 ILE A 67 LEU A 68 0
SHEET 2 AA2 2 THR A 91 ILE A 92 1 O THR A 91 N LEU A 68
SHEET 1 AA3 2 THR A 188 ILE A 189 0
SHEET 2 AA3 2 PHE A 216 ILE A 217 1 O PHE A 216 N ILE A 189
SHEET 1 AA4 3 PHE A 385 CYS A 388 0
SHEET 2 AA4 3 ALA A 409 MET A 412 1 O ILE A 411 N PHE A 385
SHEET 3 AA4 3 THR A 431 LYS A 433 1 O LYS A 433 N MET A 412
SHEET 1 AA5 2 LYS A 458 ILE A 459 0
SHEET 2 AA5 2 SER A 480 PHE A 481 1 O SER A 480 N ILE A 459
SHEET 1 AA6 2 THR A 485 LEU A 486 0
SHEET 2 AA6 2 GLN A 508 ILE A 509 1 O GLN A 508 N LEU A 486
SHEET 1 AA7 6 TRP C 23 ASN C 26 0
SHEET 2 AA7 6 ALA C 30 TYR C 36 -1 O ILE C 32 N CYS C 25
SHEET 3 AA7 6 GLU C 144 HIS C 155 -1 O THR C 152 N SER C 33
SHEET 4 AA7 6 GLY C 129 ALA C 139 -1 N TYR C 131 O ILE C 153
SHEET 5 AA7 6 LEU C 74 VAL C 82 -1 N ASN C 77 O GLU C 136
SHEET 6 AA7 6 ILE C 85 GLU C 86 -1 O ILE C 85 N VAL C 82
SHEET 1 AA8 6 TRP C 23 ASN C 26 0
SHEET 2 AA8 6 ALA C 30 TYR C 36 -1 O ILE C 32 N CYS C 25
SHEET 3 AA8 6 GLU C 144 HIS C 155 -1 O THR C 152 N SER C 33
SHEET 4 AA8 6 GLY C 129 ALA C 139 -1 N TYR C 131 O ILE C 153
SHEET 5 AA8 6 LEU C 74 VAL C 82 -1 N ASN C 77 O GLU C 136
SHEET 6 AA8 6 ARG C 90 VAL C 93 -1 O ARG C 90 N LEU C 78
SHEET 1 AA9 3 SER C 45 GLU C 49 0
SHEET 2 AA9 3 GLY C 56 PHE C 65 -1 O PHE C 60 N GLU C 49
SHEET 3 AA9 3 VAL C 113 GLU C 122 -1 O THR C 115 N VAL C 63
SSBOND 1 CYS A 28 CYS A 39 1555 1555 2.03
SSBOND 2 CYS A 280 CYS A 304 1555 1555 2.03
SSBOND 3 CYS A 388 CYS A 389 1555 1555 2.02
SSBOND 4 CYS A 580 CYS A 605 1555 1555 2.03
SSBOND 5 CYS A 582 CYS A 617 1555 1555 2.03
SSBOND 6 CYS C 25 CYS C 51 1555 1555 2.03
SSBOND 7 CYS C 37 CYS C 148 1555 1555 2.03
SSBOND 8 CYS C 95 CYS C 105 1555 1555 2.03
LINK ND2 ASN A 204 C1 NAG B 1 1555 1555 1.53
LINK ND2 ASN A 237 C1 NAG D 1 1555 1555 1.48
LINK ND2 ASN A 492 C1 NAG A 701 1555 1555 1.52
LINK ND2 ASN A 524 C1 NAG A 702 1555 1555 1.51
LINK ND2 ASN C 114 C1 NAG C 201 1555 1555 1.48
LINK ND2 ASN C 150 C1 NAG C 202 1555 1555 1.53
LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43
LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43
LINK O4 NAG D 2 C1 NAG D 3 1555 1555 1.46
CISPEP 1 CYS A 388 CYS A 389 0 -8.89
CISPEP 2 CYS A 582 PRO A 583 0 3.69
CISPEP 3 GLU C 49 PRO C 50 0 -0.08
CRYST1 145.094 164.293 89.296 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006892 0.000000 0.000000 0.00000
SCALE2 0.000000 0.006087 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011199 0.00000