HEADER TRANSPORT PROTEIN 01-MAY-21 7MNR TITLE CRYSTAL STRUCTURE OF THE ZNF3 OF NUCLEOPORIN NUP358/RANBP2 IN COMPLEX TITLE 2 WITH RAN-GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING NUCLEAR PROTEIN RAN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ANDROGEN RECEPTOR-ASSOCIATED PROTEIN 24,GTPASE RAN,RAS-LIKE COMPND 5 PROTEIN TC4,RAS-RELATED NUCLEAR PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: E3 SUMO-PROTEIN LIGASE RANBP2; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: 358 KDA NUCLEOPORIN,NUCLEAR PORE COMPLEX PROTEIN NUP358, COMPND 12 NUCLEOPORIN NUP358,RAN-BINDING PROTEIN 2,RANBP2,P270; COMPND 13 EC: 2.3.2.-; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAN, ARA24, OK/SW-CL.81; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RANBP2, NUP358; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEAR PORE COMPLEX COMPONENT, NUCLEOCYTOPLASMIC TRANSPORT, KEYWDS 2 TRANSPORT PROTEIN, ZINC FINGER EXPDTA X-RAY DIFFRACTION AUTHOR C.J.BLEY,S.NIE,G.W.MOBBS,S.PETROVIC,A.T.GRES,X.LIU,S.MUKHERJEE, AUTHOR 2 S.HARVEY,F.M.HUBER,D.H.LIN,B.BROWN,A.W.TANG,E.J.RUNDLET,A.R.CORREIA, AUTHOR 3 S.CHEN,S.G.REGMI,T.A.STEVENS,C.A.JETTE,M.DASSO,A.PATKE,A.F.PALAZZO, AUTHOR 4 A.A.KOSSIAKOFF,A.HOELZ REVDAT 3 22-MAY-24 7MNR 1 REMARK REVDAT 2 22-JUN-22 7MNR 1 JRNL REVDAT 1 15-JUN-22 7MNR 0 JRNL AUTH C.J.BLEY,S.NIE,G.W.MOBBS,S.PETROVIC,A.T.GRES,X.LIU, JRNL AUTH 2 S.MUKHERJEE,S.HARVEY,F.M.HUBER,D.H.LIN,B.BROWN,A.W.TANG, JRNL AUTH 3 E.J.RUNDLET,A.R.CORREIA,S.CHEN,S.G.REGMI,T.A.STEVENS, JRNL AUTH 4 C.A.JETTE,M.DASSO,A.PATKE,A.F.PALAZZO,A.A.KOSSIAKOFF,A.HOELZ JRNL TITL ARCHITECTURE OF THE CYTOPLASMIC FACE OF THE NUCLEAR PORE. JRNL REF SCIENCE V. 376 M9129 2022 JRNL REFN ESSN 1095-9203 JRNL PMID 35679405 JRNL DOI 10.1126/SCIENCE.ABM9129 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4400 - 3.7400 1.00 2828 126 0.1503 0.1695 REMARK 3 2 3.7400 - 2.9700 1.00 2668 137 0.1445 0.1873 REMARK 3 3 2.9700 - 2.6000 1.00 2648 134 0.1578 0.2100 REMARK 3 4 2.6000 - 2.3600 1.00 2626 130 0.1514 0.2024 REMARK 3 5 2.3600 - 2.1900 1.00 2599 145 0.1556 0.2079 REMARK 3 6 2.1900 - 2.0600 1.00 2575 176 0.1593 0.1819 REMARK 3 7 2.0600 - 1.9600 1.00 2584 148 0.1851 0.2328 REMARK 3 8 1.9600 - 1.8700 1.00 2624 112 0.2336 0.2907 REMARK 3 9 1.8700 - 1.8000 0.96 2485 122 0.2663 0.2449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2371 14.9554 22.8829 REMARK 3 T TENSOR REMARK 3 T11: 0.1872 T22: 0.1717 REMARK 3 T33: 0.2054 T12: 0.0062 REMARK 3 T13: -0.0032 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.6060 L22: 1.1406 REMARK 3 L33: 1.1038 L12: 0.3698 REMARK 3 L13: -0.0703 L23: 1.0496 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: -0.2756 S13: -0.2031 REMARK 3 S21: 0.0782 S22: 0.0636 S23: -0.1080 REMARK 3 S31: 0.0612 S32: -0.1235 S33: -0.1244 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0665 8.4953 25.6961 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.2106 REMARK 3 T33: 0.2152 T12: 0.0046 REMARK 3 T13: 0.0077 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.6509 L22: 2.7027 REMARK 3 L33: 1.2234 L12: -0.0931 REMARK 3 L13: 0.2208 L23: 0.0891 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: -0.1490 S13: -0.1028 REMARK 3 S21: 0.2244 S22: 0.1015 S23: 0.1680 REMARK 3 S31: 0.0565 S32: -0.0868 S33: -0.0174 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6176 21.6273 28.9076 REMARK 3 T TENSOR REMARK 3 T11: 0.2801 T22: 0.2461 REMARK 3 T33: 0.2524 T12: 0.0311 REMARK 3 T13: 0.0109 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.7728 L22: 2.0428 REMARK 3 L33: 2.7713 L12: -0.4170 REMARK 3 L13: -0.8037 L23: 0.3106 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.1898 S13: 0.2922 REMARK 3 S21: 0.1735 S22: 0.1215 S23: -0.0348 REMARK 3 S31: -0.2906 S32: -0.1251 S33: -0.1262 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0051 27.8265 14.6774 REMARK 3 T TENSOR REMARK 3 T11: 0.2774 T22: 0.1828 REMARK 3 T33: 0.3020 T12: 0.0182 REMARK 3 T13: 0.0129 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 3.4953 L22: 3.1234 REMARK 3 L33: 1.5702 L12: -0.6285 REMARK 3 L13: 0.5723 L23: -0.8340 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: 0.0726 S13: 0.6177 REMARK 3 S21: -0.1442 S22: -0.0320 S23: -0.2395 REMARK 3 S31: -0.3957 S32: -0.0247 S33: 0.1230 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7357 19.5962 11.8587 REMARK 3 T TENSOR REMARK 3 T11: 0.2685 T22: 0.2596 REMARK 3 T33: 0.3064 T12: -0.0380 REMARK 3 T13: 0.0369 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 1.3729 L22: 1.4262 REMARK 3 L33: 2.1430 L12: -1.3336 REMARK 3 L13: 0.5396 L23: -0.7449 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: 0.3957 S13: 0.4368 REMARK 3 S21: -0.1300 S22: -0.1120 S23: -0.3490 REMARK 3 S31: -0.2662 S32: 0.2702 S33: 0.0223 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9474 9.4142 9.1966 REMARK 3 T TENSOR REMARK 3 T11: 0.2661 T22: 0.2673 REMARK 3 T33: 0.2648 T12: -0.0285 REMARK 3 T13: 0.0221 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 0.9375 L22: 0.9266 REMARK 3 L33: 1.1945 L12: -0.3497 REMARK 3 L13: -0.2494 L23: -0.4265 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: 0.2309 S13: -0.2033 REMARK 3 S21: -0.2036 S22: 0.1333 S23: -0.0945 REMARK 3 S31: 0.0148 S32: 0.0091 S33: -0.1566 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8630 23.8494 -1.5381 REMARK 3 T TENSOR REMARK 3 T11: 0.4545 T22: 0.4589 REMARK 3 T33: 0.4446 T12: -0.0248 REMARK 3 T13: 0.0991 T23: 0.1141 REMARK 3 L TENSOR REMARK 3 L11: 5.0815 L22: 2.4425 REMARK 3 L33: 1.2225 L12: 3.2551 REMARK 3 L13: -1.0219 L23: -0.1786 REMARK 3 S TENSOR REMARK 3 S11: -0.1121 S12: 0.1644 S13: 0.3922 REMARK 3 S21: -0.2079 S22: -0.0098 S23: -0.1778 REMARK 3 S31: -0.0013 S32: 0.2318 S33: 0.1464 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1468 THROUGH 1476 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4281 0.6672 25.3992 REMARK 3 T TENSOR REMARK 3 T11: 0.7977 T22: 0.8267 REMARK 3 T33: 1.0764 T12: 0.2333 REMARK 3 T13: 0.0458 T23: -0.1282 REMARK 3 L TENSOR REMARK 3 L11: 3.4786 L22: 6.7620 REMARK 3 L33: 5.4564 L12: 0.9596 REMARK 3 L13: 1.3545 L23: -0.0310 REMARK 3 S TENSOR REMARK 3 S11: -0.2946 S12: -0.3116 S13: -1.5093 REMARK 3 S21: -0.0159 S22: -0.2836 S23: -0.4728 REMARK 3 S31: 0.3309 S32: 0.3478 S33: 0.5040 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1477 THROUGH 1480 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6147 6.9949 38.6305 REMARK 3 T TENSOR REMARK 3 T11: 0.7947 T22: 1.1617 REMARK 3 T33: 0.5788 T12: -0.0496 REMARK 3 T13: -0.0256 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 0.4669 L22: 0.2559 REMARK 3 L33: 1.8416 L12: -0.3283 REMARK 3 L13: -0.8742 L23: 0.6823 REMARK 3 S TENSOR REMARK 3 S11: -0.1891 S12: 0.6843 S13: -0.3550 REMARK 3 S21: -0.1681 S22: -0.5686 S23: -0.1543 REMARK 3 S31: 0.1920 S32: -0.1985 S33: 0.5812 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1481 THROUGH 1493 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3436 11.1681 38.6138 REMARK 3 T TENSOR REMARK 3 T11: 0.3942 T22: 0.6222 REMARK 3 T33: 0.2968 T12: 0.1217 REMARK 3 T13: 0.0495 T23: 0.1215 REMARK 3 L TENSOR REMARK 3 L11: 2.8854 L22: 3.1158 REMARK 3 L33: 1.3374 L12: -1.5803 REMARK 3 L13: 1.4591 L23: -0.3935 REMARK 3 S TENSOR REMARK 3 S11: -0.3232 S12: -0.8723 S13: -0.6322 REMARK 3 S21: -0.1395 S22: -0.1318 S23: -0.5511 REMARK 3 S31: 0.4379 S32: 1.2179 S33: 0.4105 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1494 THROUGH 1497 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4431 14.7057 47.2144 REMARK 3 T TENSOR REMARK 3 T11: 0.5820 T22: 1.3556 REMARK 3 T33: 0.4686 T12: 0.2526 REMARK 3 T13: -0.0640 T23: 0.0589 REMARK 3 L TENSOR REMARK 3 L11: 7.5607 L22: 0.6083 REMARK 3 L33: 1.3349 L12: -1.7736 REMARK 3 L13: -3.1728 L23: 0.7702 REMARK 3 S TENSOR REMARK 3 S11: 0.1055 S12: -0.0800 S13: -0.1224 REMARK 3 S21: 0.1057 S22: -0.1171 S23: -0.3087 REMARK 3 S31: -0.3336 S32: 0.4960 S33: 0.0138 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1498 THROUGH 1507 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0298 14.7190 43.5553 REMARK 3 T TENSOR REMARK 3 T11: 0.4957 T22: 0.6336 REMARK 3 T33: 0.2434 T12: -0.0200 REMARK 3 T13: 0.0204 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 7.4980 L22: 3.8429 REMARK 3 L33: 3.5599 L12: 0.8633 REMARK 3 L13: 3.4264 L23: 1.8750 REMARK 3 S TENSOR REMARK 3 S11: 0.2528 S12: -1.1601 S13: -0.0904 REMARK 3 S21: 0.7950 S22: -0.7433 S23: 0.0264 REMARK 3 S31: 0.4112 S32: 0.6390 S33: 0.4591 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2824 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24915 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% (W/V) PEG 3350; 0.1 M BIS-TRIS, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.78500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.78500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 460 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 500 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 583 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 209 REMARK 465 PRO A 210 REMARK 465 ASP A 211 REMARK 465 GLU A 212 REMARK 465 ASP A 213 REMARK 465 ASP A 214 REMARK 465 ASP A 215 REMARK 465 LEU A 216 REMARK 465 GLY B 1465 REMARK 465 PRO B 1466 REMARK 465 LEU B 1467 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 113 -132.91 58.43 REMARK 500 ASN A 114 43.40 -93.24 REMARK 500 LYS A 123 30.82 70.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 24 OG1 REMARK 620 2 GDP A 301 O3B 92.2 REMARK 620 3 HOH A 424 O 92.6 86.0 REMARK 620 4 HOH A 439 O 174.0 93.3 90.1 REMARK 620 5 HOH A 467 O 87.1 96.1 178.0 90.0 REMARK 620 6 HOH A 478 O 85.9 172.1 86.5 88.9 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1485 SG REMARK 620 2 CYS B1488 SG 113.4 REMARK 620 3 CYS B1499 SG 106.1 103.2 REMARK 620 4 CYS B1502 SG 102.7 117.1 114.0 REMARK 620 N 1 2 3 DBREF 7MNR A 1 216 UNP P62826 RAN_HUMAN 1 216 DBREF 7MNR B 1471 1507 UNP P49792 RBP2_HUMAN 1471 1507 SEQADV 7MNR MET A -19 UNP P62826 EXPRESSION TAG SEQADV 7MNR GLY A -18 UNP P62826 EXPRESSION TAG SEQADV 7MNR SER A -17 UNP P62826 EXPRESSION TAG SEQADV 7MNR SER A -16 UNP P62826 EXPRESSION TAG SEQADV 7MNR HIS A -15 UNP P62826 EXPRESSION TAG SEQADV 7MNR HIS A -14 UNP P62826 EXPRESSION TAG SEQADV 7MNR HIS A -13 UNP P62826 EXPRESSION TAG SEQADV 7MNR HIS A -12 UNP P62826 EXPRESSION TAG SEQADV 7MNR HIS A -11 UNP P62826 EXPRESSION TAG SEQADV 7MNR HIS A -10 UNP P62826 EXPRESSION TAG SEQADV 7MNR SER A -9 UNP P62826 EXPRESSION TAG SEQADV 7MNR SER A -8 UNP P62826 EXPRESSION TAG SEQADV 7MNR GLY A -7 UNP P62826 EXPRESSION TAG SEQADV 7MNR LEU A -6 UNP P62826 EXPRESSION TAG SEQADV 7MNR VAL A -5 UNP P62826 EXPRESSION TAG SEQADV 7MNR PRO A -4 UNP P62826 EXPRESSION TAG SEQADV 7MNR ARG A -3 UNP P62826 EXPRESSION TAG SEQADV 7MNR GLY A -2 UNP P62826 EXPRESSION TAG SEQADV 7MNR SER A -1 UNP P62826 EXPRESSION TAG SEQADV 7MNR HIS A 0 UNP P62826 EXPRESSION TAG SEQADV 7MNR SER A 35 UNP P62826 PHE 35 ENGINEERED MUTATION SEQADV 7MNR GLY B 1465 UNP P49792 EXPRESSION TAG SEQADV 7MNR PRO B 1466 UNP P49792 EXPRESSION TAG SEQADV 7MNR LEU B 1467 UNP P49792 EXPRESSION TAG SEQADV 7MNR GLY B 1468 UNP P49792 EXPRESSION TAG SEQADV 7MNR SER B 1469 UNP P49792 EXPRESSION TAG SEQADV 7MNR MET B 1470 UNP P49792 EXPRESSION TAG SEQRES 1 A 236 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 236 LEU VAL PRO ARG GLY SER HIS MET ALA ALA GLN GLY GLU SEQRES 3 A 236 PRO GLN VAL GLN PHE LYS LEU VAL LEU VAL GLY ASP GLY SEQRES 4 A 236 GLY THR GLY LYS THR THR PHE VAL LYS ARG HIS LEU THR SEQRES 5 A 236 GLY GLU SER GLU LYS LYS TYR VAL ALA THR LEU GLY VAL SEQRES 6 A 236 GLU VAL HIS PRO LEU VAL PHE HIS THR ASN ARG GLY PRO SEQRES 7 A 236 ILE LYS PHE ASN VAL TRP ASP THR ALA GLY GLN GLU LYS SEQRES 8 A 236 PHE GLY GLY LEU ARG ASP GLY TYR TYR ILE GLN ALA GLN SEQRES 9 A 236 CYS ALA ILE ILE MET PHE ASP VAL THR SER ARG VAL THR SEQRES 10 A 236 TYR LYS ASN VAL PRO ASN TRP HIS ARG ASP LEU VAL ARG SEQRES 11 A 236 VAL CYS GLU ASN ILE PRO ILE VAL LEU CYS GLY ASN LYS SEQRES 12 A 236 VAL ASP ILE LYS ASP ARG LYS VAL LYS ALA LYS SER ILE SEQRES 13 A 236 VAL PHE HIS ARG LYS LYS ASN LEU GLN TYR TYR ASP ILE SEQRES 14 A 236 SER ALA LYS SER ASN TYR ASN PHE GLU LYS PRO PHE LEU SEQRES 15 A 236 TRP LEU ALA ARG LYS LEU ILE GLY ASP PRO ASN LEU GLU SEQRES 16 A 236 PHE VAL ALA MET PRO ALA LEU ALA PRO PRO GLU VAL VAL SEQRES 17 A 236 MET ASP PRO ALA LEU ALA ALA GLN TYR GLU HIS ASP LEU SEQRES 18 A 236 GLU VAL ALA GLN THR THR ALA LEU PRO ASP GLU ASP ASP SEQRES 19 A 236 ASP LEU SEQRES 1 B 43 GLY PRO LEU GLY SER MET ASP PHE ARG SER VAL PHE SER SEQRES 2 B 43 THR LYS GLU GLY GLN TRP ASP CYS SER ALA CYS LEU VAL SEQRES 3 B 43 GLN ASN GLU GLY SER SER THR LYS CYS ALA ALA CYS GLN SEQRES 4 B 43 ASN PRO ARG LYS HET GDP A 301 40 HET MG A 302 1 HET ZN B1601 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 MG MG 2+ FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *211(H2 O) HELIX 1 AA1 GLY A 22 LYS A 28 1 7 HELIX 2 AA2 HIS A 30 GLU A 36 1 7 HELIX 3 AA3 GLY A 68 GLY A 73 5 6 HELIX 4 AA4 ARG A 76 ILE A 81 1 6 HELIX 5 AA5 SER A 94 ASN A 100 1 7 HELIX 6 AA6 ASN A 100 GLU A 113 1 14 HELIX 7 AA7 LYS A 132 HIS A 139 1 8 HELIX 8 AA8 SER A 150 ASN A 154 5 5 HELIX 9 AA9 GLU A 158 GLY A 170 1 13 HELIX 10 AB1 ASP A 190 THR A 207 1 18 HELIX 11 AB2 ASP B 1471 PHE B 1476 1 6 SHEET 1 AA1 7 LYS A 38 VAL A 40 0 SHEET 2 AA1 7 VAL A 45 THR A 54 -1 O VAL A 45 N VAL A 40 SHEET 3 AA1 7 GLY A 57 THR A 66 -1 O PHE A 61 N LEU A 50 SHEET 4 AA1 7 VAL A 9 GLY A 17 1 N PHE A 11 O ASN A 62 SHEET 5 AA1 7 CYS A 85 ASP A 91 1 O MET A 89 N VAL A 16 SHEET 6 AA1 7 ILE A 117 ASN A 122 1 O CYS A 120 N ILE A 88 SHEET 7 AA1 7 LEU A 144 ASP A 148 1 O GLN A 145 N LEU A 119 SHEET 1 AA2 3 LYS A 38 VAL A 40 0 SHEET 2 AA2 3 VAL A 45 THR A 54 -1 O VAL A 45 N VAL A 40 SHEET 3 AA2 3 PHE A 176 ALA A 178 -1 O VAL A 177 N HIS A 53 SHEET 1 AA3 2 TRP B1483 ASP B1484 0 SHEET 2 AA3 2 GLN B1491 ASN B1492 -1 O ASN B1492 N TRP B1483 LINK OG1 THR A 24 MG MG A 302 1555 1555 2.13 LINK O3B GDP A 301 MG MG A 302 1555 1555 2.06 LINK MG MG A 302 O HOH A 424 1555 1555 2.14 LINK MG MG A 302 O HOH A 439 1555 1555 2.11 LINK MG MG A 302 O HOH A 467 1555 1555 2.06 LINK MG MG A 302 O HOH A 478 1555 1555 2.14 LINK SG CYS B1485 ZN ZN B1601 1555 1555 2.40 LINK SG CYS B1488 ZN ZN B1601 1555 1555 2.37 LINK SG CYS B1499 ZN ZN B1601 1555 1555 2.43 LINK SG CYS B1502 ZN ZN B1601 1555 1555 2.41 CRYST1 59.570 80.200 54.830 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016787 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018238 0.00000