HEADER VIRAL PROTEIN, HYDROLASE 04-MAY-21 7MPF TITLE THE CRYSTAL STRUCTURE OF WILD TYPE PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000986436 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2,RNA-DIRECTED RNA COMPND 5 POLYMERASE SUBUNIT P2; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SWL SOURCE 3 A/CALIFORNIA/04/2009 H1N1); SOURCE 4 ORGANISM_TAXID: 641501; SOURCE 5 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 6 GENE: PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN, VIRAL KEYWDS 2 PROTEIN-INHIBITOR COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 3 22-NOV-23 7MPF 1 JRNL REVDAT 2 18-OCT-23 7MPF 1 REMARK REVDAT 1 04-MAY-22 7MPF 0 JRNL AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, JRNL AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, JRNL AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, JRNL AUTH 4 S.W.WHITE JRNL TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF JRNL TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS JRNL TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE JRNL TITL 4 RESISTANCE POTENTIAL. JRNL REF EUR.J.MED.CHEM. V. 247 15035 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36603507 JRNL DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 7014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 74.5000 - 4.0400 0.99 2295 123 0.2009 0.1920 REMARK 3 2 4.0400 - 3.2100 1.00 2179 131 0.2234 0.2748 REMARK 3 3 3.2100 - 2.8000 1.00 2171 115 0.2973 0.3937 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.454 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.877 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1571 REMARK 3 ANGLE : 0.515 2134 REMARK 3 CHIRALITY : 0.039 218 REMARK 3 PLANARITY : 0.003 268 REMARK 3 DIHEDRAL : 19.729 554 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8941 24.0750 7.5781 REMARK 3 T TENSOR REMARK 3 T11: 0.6890 T22: 0.5001 REMARK 3 T33: 0.5566 T12: -0.1029 REMARK 3 T13: -0.2686 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 4.7840 L22: 1.3998 REMARK 3 L33: 6.2707 L12: -0.2326 REMARK 3 L13: -3.2114 L23: -1.0578 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: 0.6889 S13: 0.2685 REMARK 3 S21: -0.0938 S22: -0.3154 S23: -0.1988 REMARK 3 S31: -0.8415 S32: -0.0775 S33: 0.2286 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2894 21.5995 19.2625 REMARK 3 T TENSOR REMARK 3 T11: 0.8863 T22: 0.6972 REMARK 3 T33: 0.4741 T12: 0.0440 REMARK 3 T13: -0.1813 T23: -0.2941 REMARK 3 L TENSOR REMARK 3 L11: 5.4864 L22: 1.6879 REMARK 3 L33: 6.0565 L12: -0.7557 REMARK 3 L13: 0.4622 L23: -1.5932 REMARK 3 S TENSOR REMARK 3 S11: 0.1493 S12: 0.2121 S13: 0.2359 REMARK 3 S21: 0.7861 S22: -0.5574 S23: 0.1770 REMARK 3 S31: -0.4617 S32: -1.0700 S33: 0.3841 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2575 25.6591 24.9820 REMARK 3 T TENSOR REMARK 3 T11: 0.9206 T22: 0.6831 REMARK 3 T33: 0.5252 T12: -0.0135 REMARK 3 T13: -0.2775 T23: -0.2531 REMARK 3 L TENSOR REMARK 3 L11: 3.2670 L22: 2.1833 REMARK 3 L33: 2.9630 L12: -1.9631 REMARK 3 L13: 0.2897 L23: 0.3169 REMARK 3 S TENSOR REMARK 3 S11: -0.0937 S12: -0.8438 S13: 0.9400 REMARK 3 S21: 0.5304 S22: -0.0944 S23: 0.1104 REMARK 3 S31: -0.7073 S32: 0.3415 S33: 0.1866 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1756 33.8911 27.6008 REMARK 3 T TENSOR REMARK 3 T11: 1.8321 T22: 0.8899 REMARK 3 T33: 0.9662 T12: -0.2575 REMARK 3 T13: -0.2493 T23: -0.2653 REMARK 3 L TENSOR REMARK 3 L11: 4.9651 L22: 1.3125 REMARK 3 L33: 4.5843 L12: 1.1811 REMARK 3 L13: -1.1370 L23: 1.8050 REMARK 3 S TENSOR REMARK 3 S11: 0.1430 S12: -0.4350 S13: 0.2974 REMARK 3 S21: 0.4373 S22: 0.8678 S23: -1.1404 REMARK 3 S31: -0.7851 S32: 0.7305 S33: -0.8473 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6218 27.6175 28.1408 REMARK 3 T TENSOR REMARK 3 T11: 0.8217 T22: 0.7858 REMARK 3 T33: 0.5671 T12: -0.1994 REMARK 3 T13: -0.2173 T23: -0.2763 REMARK 3 L TENSOR REMARK 3 L11: 4.1227 L22: 2.5176 REMARK 3 L33: 8.9659 L12: -3.1334 REMARK 3 L13: -4.2705 L23: 2.4598 REMARK 3 S TENSOR REMARK 3 S11: 0.4884 S12: -0.7398 S13: 0.3359 REMARK 3 S21: 0.3132 S22: -0.3089 S23: -0.2661 REMARK 3 S31: -0.5689 S32: -0.3229 S33: 0.2324 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2144 21.3770 20.7775 REMARK 3 T TENSOR REMARK 3 T11: 0.8165 T22: 0.6694 REMARK 3 T33: 0.6226 T12: -0.1995 REMARK 3 T13: -0.3416 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 3.3475 L22: 1.0760 REMARK 3 L33: 3.8227 L12: -0.3595 REMARK 3 L13: -1.0671 L23: -1.6495 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: -0.3188 S13: 0.2159 REMARK 3 S21: 0.4749 S22: -0.3120 S23: -0.3797 REMARK 3 S31: -0.9444 S32: 0.5769 S33: 0.2863 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7817 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 74.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.71900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6VL3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.86150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.86150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.85000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.86150 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.86150 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.85000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.86150 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.86150 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.85000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.86150 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.86150 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.85000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.86150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.86150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.85000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.86150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.86150 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.85000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.86150 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.86150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.85000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.86150 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.86150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 19 CE NZ REMARK 470 LYS A 34 CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 SER A 140 OG REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 MET A 155 CG SD CE REMARK 470 LYS A 158 CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -1 112.87 66.30 REMARK 500 HIS A 74 -118.76 -100.46 REMARK 500 ARG A 75 -45.61 68.44 REMARK 500 ARG A 125 -162.69 -105.29 REMARK 500 SER A 140 138.57 66.25 REMARK 500 GLU A 141 22.05 -75.41 REMARK 500 THR A 162 -66.60 62.05 REMARK 500 GLN A 193 57.48 -93.99 REMARK 500 SER A 194 -21.77 -145.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 92.8 REMARK 620 3 GLU A 119 OE2 172.2 94.4 REMARK 620 4 ILE A 120 O 84.8 94.2 91.7 REMARK 620 5 R1D A 203 O13 101.4 106.9 79.2 157.5 REMARK 620 6 R1D A 203 O13 101.4 106.9 79.2 157.5 0.0 REMARK 620 7 R1D A 203 O15 85.5 172.1 86.9 78.0 81.0 81.0 REMARK 620 8 R1D A 203 O15 82.3 171.2 90.1 78.1 81.3 81.3 3.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD1 REMARK 620 2 R1D A 203 O10 144.6 REMARK 620 3 R1D A 203 O10 144.6 0.0 REMARK 620 4 R1D A 203 O13 80.6 66.5 66.5 REMARK 620 5 R1D A 203 O13 80.6 66.5 66.5 0.0 REMARK 620 6 HOH A 301 O 86.7 69.2 69.2 67.6 67.6 REMARK 620 7 HOH A 303 O 102.6 97.3 97.3 144.9 144.9 77.6 REMARK 620 N 1 2 3 4 5 6 DBREF 7MPF A 1 50 UNP C3W5S0 C3W5S0_I09A0 1 50 DBREF 7MPF A 73 196 UNP C3W5S0 C3W5S0_I09A0 73 196 SEQADV 7MPF MET A -19 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF GLY A -18 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF SER A -17 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF SER A -16 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF HIS A -15 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF HIS A -14 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF HIS A -13 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF HIS A -12 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF HIS A -11 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF HIS A -10 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF SER A -9 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF SER A -8 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF GLY A -7 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF LEU A -6 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF VAL A -5 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF PRO A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF ARG A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF HIS A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 7MPF GLY A 51 UNP C3W5S0 LINKER SEQADV 7MPF GLY A 52 UNP C3W5S0 LINKER SEQADV 7MPF SER A 53 UNP C3W5S0 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET R1D A 203 64 HET QQ4 A 204 48 HET SO4 A 205 5 HETNAM MN MANGANESE (II) ION HETNAM R1D 5-HYDROXY-N-[2-(4-HYDROXY-3-METHOXYPHENYL)ETHYL]-6-OXO- HETNAM 2 R1D 2-[2-(TRIFLUOROMETHYL)PHENYL]-1,6-DIHYDROPYRIMIDINE-4- HETNAM 3 R1D CARBOXAMIDE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 R1D C21 H18 F3 N3 O5 FORMUL 5 QQ4 C36 H56 N6 O6 FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *8(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 ILE A 138 1 13 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O PHE A 148 N GLY A 121 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.41 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.08 LINK OD1 ASP A 108 MN MN A 202 1555 1555 1.90 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.12 LINK O ILE A 120 MN MN A 201 1555 1555 2.04 LINK MN MN A 201 O13AR1D A 203 1555 1555 2.04 LINK MN MN A 201 O13BR1D A 203 1555 1555 2.04 LINK MN MN A 201 O15AR1D A 203 1555 1555 2.26 LINK MN MN A 201 O15BR1D A 203 1555 1555 2.15 LINK MN MN A 202 O10AR1D A 203 1555 1555 2.10 LINK MN MN A 202 O10BR1D A 203 1555 1555 2.10 LINK MN MN A 202 O13AR1D A 203 1555 1555 2.65 LINK MN MN A 202 O13BR1D A 203 1555 1555 2.65 LINK MN MN A 202 O HOH A 301 1555 1555 1.91 LINK MN MN A 202 O HOH A 303 1555 1555 2.58 CRYST1 89.723 89.723 133.700 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011145 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007479 0.00000