HEADER RNA BINDING PROTEIN/RNA 04-MAY-21 7MPU TITLE BRUCELLA MELITENSIS NRNC BOUND TO PGG COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANORNASE C; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-PHOSPHORYLATED GG; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS; SOURCE 3 ORGANISM_TAXID: 29459; SOURCE 4 GENE: F6Y32_00630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS RNASE, BACTERIA, ENZYME, RNA BINDING PROTEIN, RNA BINDING PROTEIN-RNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.LORMAND,H.SONDERMANN REVDAT 3 18-OCT-23 7MPU 1 REMARK REVDAT 2 29-SEP-21 7MPU 1 JRNL REVDAT 1 15-SEP-21 7MPU 0 JRNL AUTH J.D.LORMAND,S.K.KIM,G.A.WALTERS-MARRAH,B.A.BROWNFIELD, JRNL AUTH 2 J.C.FROMME,W.C.WINKLER,J.R.GOODSON,V.T.LEE,H.SONDERMANN JRNL TITL STRUCTURAL CHARACTERIZATION OF NRNC IDENTIFIES UNIFYING JRNL TITL 2 FEATURES OF DINUCLEOTIDASES. JRNL REF ELIFE V. 10 2021 JRNL REFN ESSN 2050-084X JRNL PMID 34533457 JRNL DOI 10.7554/ELIFE.70146 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 66918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.0500 - 4.1400 1.00 4894 151 0.1403 0.1350 REMARK 3 2 4.1400 - 3.2900 1.00 4700 145 0.1273 0.1685 REMARK 3 3 3.2900 - 2.8700 1.00 4694 144 0.1602 0.2028 REMARK 3 4 2.8700 - 2.6100 1.00 4650 144 0.1710 0.2063 REMARK 3 5 2.6100 - 2.4200 1.00 4626 142 0.1610 0.1941 REMARK 3 6 2.4200 - 2.2800 1.00 4618 142 0.1598 0.2075 REMARK 3 7 2.2800 - 2.1600 1.00 4625 143 0.1533 0.1590 REMARK 3 8 2.1600 - 2.0700 1.00 4606 142 0.1592 0.2091 REMARK 3 9 2.0700 - 1.9900 1.00 4597 142 0.1597 0.1962 REMARK 3 10 1.9900 - 1.9200 1.00 4602 141 0.1611 0.1866 REMARK 3 11 1.9200 - 1.8600 1.00 4583 141 0.1697 0.2052 REMARK 3 12 1.8600 - 1.8100 1.00 4596 142 0.1919 0.2261 REMARK 3 13 1.8100 - 1.7600 1.00 4578 141 0.2074 0.2377 REMARK 3 14 1.7600 - 1.7200 0.99 4549 140 0.2377 0.2809 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.182 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.279 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3452 REMARK 3 ANGLE : 0.800 4698 REMARK 3 CHIRALITY : 0.055 531 REMARK 3 PLANARITY : 0.005 600 REMARK 3 DIHEDRAL : 16.621 2108 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 0:75) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6249 5.6499 -34.0803 REMARK 3 T TENSOR REMARK 3 T11: 0.1600 T22: 0.1888 REMARK 3 T33: 0.1719 T12: 0.0160 REMARK 3 T13: 0.0181 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 2.1831 L22: 1.5955 REMARK 3 L33: 1.2450 L12: -1.2467 REMARK 3 L13: -0.6563 L23: 0.0463 REMARK 3 S TENSOR REMARK 3 S11: 0.1273 S12: 0.2067 S13: 0.2117 REMARK 3 S21: -0.1554 S22: -0.1433 S23: -0.0921 REMARK 3 S31: -0.0699 S32: 0.0605 S33: 0.0249 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 76:132) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6664 0.0590 -18.8573 REMARK 3 T TENSOR REMARK 3 T11: 0.1911 T22: 0.1776 REMARK 3 T33: 0.1735 T12: -0.0159 REMARK 3 T13: 0.0419 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.1892 L22: 0.6197 REMARK 3 L33: 2.0076 L12: -0.1199 REMARK 3 L13: 1.0653 L23: -0.6469 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.0731 S13: 0.0633 REMARK 3 S21: 0.1339 S22: 0.0131 S23: 0.0530 REMARK 3 S31: -0.2761 S32: 0.0833 S33: -0.0214 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 135:151) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8118 18.3853 -26.7444 REMARK 3 T TENSOR REMARK 3 T11: 0.2570 T22: 0.2030 REMARK 3 T33: 0.3769 T12: -0.0223 REMARK 3 T13: 0.0008 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 7.7995 L22: 3.3719 REMARK 3 L33: 2.0236 L12: -1.2639 REMARK 3 L13: 0.2003 L23: -0.1095 REMARK 3 S TENSOR REMARK 3 S11: -0.1829 S12: -0.3058 S13: 1.2315 REMARK 3 S21: 0.1422 S22: 0.1089 S23: -0.3857 REMARK 3 S31: -0.5092 S32: 0.1270 S33: 0.0766 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 152:205) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2699 -8.1454 -19.5400 REMARK 3 T TENSOR REMARK 3 T11: 0.1492 T22: 0.1500 REMARK 3 T33: 0.1464 T12: 0.0082 REMARK 3 T13: 0.0264 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.8915 L22: 0.8890 REMARK 3 L33: 0.7492 L12: 0.3512 REMARK 3 L13: 0.0772 L23: -0.2842 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: -0.0721 S13: 0.0677 REMARK 3 S21: -0.0002 S22: -0.0182 S23: 0.0434 REMARK 3 S31: 0.0374 S32: 0.0759 S33: -0.0159 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 0:60) REMARK 3 ORIGIN FOR THE GROUP (A): 46.5182 -9.6341 -31.2047 REMARK 3 T TENSOR REMARK 3 T11: 0.1643 T22: 0.2124 REMARK 3 T33: 0.1654 T12: 0.0018 REMARK 3 T13: 0.0304 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.0364 L22: 0.5977 REMARK 3 L33: 1.7766 L12: -0.2830 REMARK 3 L13: -0.0300 L23: -0.0924 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: 0.1356 S13: -0.1211 REMARK 3 S21: 0.0439 S22: 0.0552 S23: 0.0991 REMARK 3 S31: 0.0529 S32: -0.0991 S33: 0.0076 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 61:140) REMARK 3 ORIGIN FOR THE GROUP (A): 57.4531 -4.9506 -35.4815 REMARK 3 T TENSOR REMARK 3 T11: 0.1497 T22: 0.1827 REMARK 3 T33: 0.1689 T12: 0.0168 REMARK 3 T13: 0.0072 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 2.4481 L22: 0.4283 REMARK 3 L33: 1.3528 L12: 0.5034 REMARK 3 L13: -1.3146 L23: -0.7366 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.0554 S13: 0.0773 REMARK 3 S21: 0.0639 S22: 0.0086 S23: 0.0695 REMARK 3 S31: -0.0326 S32: -0.0136 S33: -0.0102 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 141:205) REMARK 3 ORIGIN FOR THE GROUP (A): 61.4965 -6.5216 -38.3842 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1821 REMARK 3 T33: 0.1441 T12: 0.0050 REMARK 3 T13: 0.0002 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.9549 L22: 0.7933 REMARK 3 L33: 0.8361 L12: -0.3057 REMARK 3 L13: -0.3480 L23: -0.1077 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: 0.0370 S13: 0.0498 REMARK 3 S21: 0.0521 S22: 0.0728 S23: -0.0030 REMARK 3 S31: -0.0217 S32: -0.0486 S33: -0.0195 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66925 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.718 REMARK 200 RESOLUTION RANGE LOW (A) : 54.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1YT3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES; 2.0 M AMONIUM SULFATE; 20 REMARK 280 % XYLITOL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 85.46100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 85.46100 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.64850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 85.46100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.32425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 85.46100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.97275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 85.46100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.97275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.46100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.32425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 85.46100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 85.46100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.64850 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 85.46100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 85.46100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.64850 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 85.46100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 63.97275 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 85.46100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 21.32425 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 85.46100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 21.32425 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 85.46100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 63.97275 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 85.46100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 85.46100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 42.64850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -403.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 85.46100 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -85.46100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -42.64850 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 170.92200 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 85.46100 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 85.46100 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -42.64850 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 5 0.000000 1.000000 0.000000 85.46100 REMARK 350 BIOMT2 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -21.32425 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 85.46100 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -21.32425 REMARK 350 BIOMT1 7 0.000000 -1.000000 0.000000 85.46100 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -21.32425 REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 85.46100 REMARK 350 BIOMT2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 -21.32425 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 133 REMARK 465 GLN A 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 176 CE NZ REMARK 470 LYS B 176 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 586 O HOH A 611 2.12 REMARK 500 NE2 GLN A 167 O HOH A 401 2.16 REMARK 500 OE1 GLN A 167 O HOH A 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G D 603 P G D 603 OP3 -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 -46.61 77.58 REMARK 500 ALA A 61 76.20 -156.55 REMARK 500 PHE A 79 66.04 62.25 REMARK 500 ASN B 8 -48.40 77.60 REMARK 500 ALA B 61 75.37 -156.70 REMARK 500 PHE B 79 62.09 60.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 691 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B 708 DISTANCE = 6.26 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 DBREF1 7MPU A 1 205 UNP A0A5P3L1U6_BRUML DBREF2 7MPU A A0A5P3L1U6 1 205 DBREF1 7MPU B 1 205 UNP A0A5P3L1U6_BRUML DBREF2 7MPU B A0A5P3L1U6 1 205 DBREF 7MPU D 603 604 PDB 7MPU 7MPU 603 604 SEQADV 7MPU SER A 0 UNP A0A5P3L1U EXPRESSION TAG SEQADV 7MPU SER B 0 UNP A0A5P3L1U EXPRESSION TAG SEQRES 1 A 206 SER MET THR ILE ARG PHE HIS ARG ASN ASP LEU PRO ASN SEQRES 2 A 206 LEU ASP ASN TYR GLN VAL ASP ALA VAL ALA ILE ASP THR SEQRES 3 A 206 GLU THR LEU GLY LEU ASN PRO HIS ARG ASP ARG LEU CYS SEQRES 4 A 206 VAL VAL GLN ILE SER PRO GLY ASP GLY THR ALA ASP VAL SEQRES 5 A 206 ILE GLN ILE GLU ALA GLY GLN LYS LYS ALA PRO ASN LEU SEQRES 6 A 206 VAL LYS LEU LEU LYS ASP ARG SER ILE THR LYS ILE PHE SEQRES 7 A 206 HIS PHE GLY ARG PHE ASP LEU ALA VAL LEU ALA HIS ALA SEQRES 8 A 206 PHE GLY THR MET PRO GLN PRO VAL PHE CYS THR LYS ILE SEQRES 9 A 206 ALA SER LYS LEU THR ARG THR TYR THR ASP ARG HIS GLY SEQRES 10 A 206 LEU LYS GLU ILE CYS SER GLU LEU LEU ASP VAL SER ILE SEQRES 11 A 206 SER LYS GLN GLN GLN SER SER ASP TRP ALA ALA GLU VAL SEQRES 12 A 206 LEU SER GLN ALA GLN LEU GLU TYR ALA ALA SER ASP VAL SEQRES 13 A 206 LEU TYR LEU HIS ARG LEU LYS ALA VAL LEU GLU GLN ARG SEQRES 14 A 206 LEU GLU ARG ASP GLY ARG THR LYS GLN ALA GLU ALA CYS SEQRES 15 A 206 PHE LYS PHE LEU PRO THR ARG SER GLU LEU ASP LEU MET SEQRES 16 A 206 GLY TRP ALA GLU SER ASP ILE PHE ALA HIS SER SEQRES 1 B 206 SER MET THR ILE ARG PHE HIS ARG ASN ASP LEU PRO ASN SEQRES 2 B 206 LEU ASP ASN TYR GLN VAL ASP ALA VAL ALA ILE ASP THR SEQRES 3 B 206 GLU THR LEU GLY LEU ASN PRO HIS ARG ASP ARG LEU CYS SEQRES 4 B 206 VAL VAL GLN ILE SER PRO GLY ASP GLY THR ALA ASP VAL SEQRES 5 B 206 ILE GLN ILE GLU ALA GLY GLN LYS LYS ALA PRO ASN LEU SEQRES 6 B 206 VAL LYS LEU LEU LYS ASP ARG SER ILE THR LYS ILE PHE SEQRES 7 B 206 HIS PHE GLY ARG PHE ASP LEU ALA VAL LEU ALA HIS ALA SEQRES 8 B 206 PHE GLY THR MET PRO GLN PRO VAL PHE CYS THR LYS ILE SEQRES 9 B 206 ALA SER LYS LEU THR ARG THR TYR THR ASP ARG HIS GLY SEQRES 10 B 206 LEU LYS GLU ILE CYS SER GLU LEU LEU ASP VAL SER ILE SEQRES 11 B 206 SER LYS GLN GLN GLN SER SER ASP TRP ALA ALA GLU VAL SEQRES 12 B 206 LEU SER GLN ALA GLN LEU GLU TYR ALA ALA SER ASP VAL SEQRES 13 B 206 LEU TYR LEU HIS ARG LEU LYS ALA VAL LEU GLU GLN ARG SEQRES 14 B 206 LEU GLU ARG ASP GLY ARG THR LYS GLN ALA GLU ALA CYS SEQRES 15 B 206 PHE LYS PHE LEU PRO THR ARG SER GLU LEU ASP LEU MET SEQRES 16 B 206 GLY TRP ALA GLU SER ASP ILE PHE ALA HIS SER SEQRES 1 D 2 G G HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 6(O4 S 2-) FORMUL 10 HOH *607(H2 O) HELIX 1 AA1 ALA A 61 ASP A 70 1 10 HELIX 2 AA2 PHE A 79 GLY A 92 1 14 HELIX 3 AA3 THR A 101 ARG A 109 1 9 HELIX 4 AA4 GLY A 116 ASP A 126 1 11 HELIX 5 AA5 SER A 144 ASP A 154 1 11 HELIX 6 AA6 TYR A 157 ASP A 172 1 16 HELIX 7 AA7 ARG A 174 GLY A 195 1 22 HELIX 8 AA8 ALA B 61 ASP B 70 1 10 HELIX 9 AA9 PHE B 79 GLY B 92 1 14 HELIX 10 AB1 THR B 101 LEU B 107 1 7 HELIX 11 AB2 GLY B 116 ASP B 126 1 11 HELIX 12 AB3 SER B 144 ASP B 154 1 11 HELIX 13 AB4 TYR B 157 ASP B 172 1 16 HELIX 14 AB5 ARG B 174 GLY B 195 1 22 SHEET 1 AA1 6 THR A 2 ARG A 7 0 SHEET 2 AA1 6 THR A 48 GLN A 53 1 O GLN A 53 N HIS A 6 SHEET 3 AA1 6 LEU A 37 SER A 43 -1 N ILE A 42 O ASP A 50 SHEET 4 AA1 6 ALA A 20 THR A 27 -1 N GLU A 26 O CYS A 38 SHEET 5 AA1 6 THR A 74 PHE A 77 1 O ILE A 76 N VAL A 21 SHEET 6 AA1 6 VAL A 98 CYS A 100 1 O PHE A 99 N PHE A 77 SHEET 1 AA2 6 THR B 2 ARG B 7 0 SHEET 2 AA2 6 THR B 48 GLN B 53 1 O GLN B 53 N HIS B 6 SHEET 3 AA2 6 LEU B 37 SER B 43 -1 N ILE B 42 O ASP B 50 SHEET 4 AA2 6 ALA B 20 THR B 27 -1 N GLU B 26 O CYS B 38 SHEET 5 AA2 6 THR B 74 PHE B 77 1 O ILE B 76 N VAL B 21 SHEET 6 AA2 6 VAL B 98 CYS B 100 1 O PHE B 99 N PHE B 77 CISPEP 1 GLN A 96 PRO A 97 0 -3.57 CISPEP 2 GLN B 96 PRO B 97 0 -4.74 SITE 1 AC1 5 HIS A 78 LYS A 102 GLY A 116 LEU A 117 SITE 2 AC1 5 HOH A 404 SITE 1 AC2 7 ALA A 140 GLU A 141 HOH A 422 HOH A 440 SITE 2 AC2 7 HOH A 474 HOH A 574 ARG B 171 SITE 1 AC3 7 HIS B 6 ARG B 7 HOH B 406 HOH B 417 SITE 2 AC3 7 HOH B 459 HOH B 483 HOH B 569 SITE 1 AC4 6 GLY B 57 GLN B 58 LYS B 59 LYS B 60 SITE 2 AC4 6 HOH B 505 HOH B 522 SITE 1 AC5 4 ARG B 160 HOH B 464 HOH B 465 HOH B 484 SITE 1 AC6 4 LYS B 118 SER B 130 LYS B 131 GLN B 132 CRYST1 170.922 170.922 85.297 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005851 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011724 0.00000