HEADER HYDROLASE 05-MAY-21 7MQN TITLE CRYSTAL STRUCTURE OF CLASS C BETA LACTAMASE FROM RHODOBACTER TITLE 2 SPHAEROIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES 2.4.1; SOURCE 3 ORGANISM_TAXID: 272943; SOURCE 4 STRAIN: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158; SOURCE 5 GENE: AMPC, RSP_3749; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BETA-LACTAMASE, AMPC, STRUCTURAL GENOMICS, ANTI, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,C.TESAR,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 OF INFECTIOUS DISEASES (CSGID) REVDAT 2 18-OCT-23 7MQN 1 REMARK REVDAT 1 19-MAY-21 7MQN 0 JRNL AUTH C.CHANG,C.TESAR,M.ENDRES,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF CLASS C BETA LACTAMASE FROM RHODOBACTER JRNL TITL 2 SPHAEROIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 45752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4500 - 5.5500 0.96 2944 211 0.1851 0.2011 REMARK 3 2 5.5500 - 4.4100 0.99 3026 122 0.1479 0.1753 REMARK 3 3 4.4100 - 3.8500 0.97 2950 142 0.1434 0.1610 REMARK 3 4 3.8500 - 3.5000 0.98 2970 143 0.1582 0.2064 REMARK 3 5 3.5000 - 3.2500 0.99 2994 151 0.1803 0.2059 REMARK 3 6 3.2500 - 3.0600 0.99 2977 152 0.2000 0.2667 REMARK 3 7 3.0600 - 2.9100 0.99 2947 177 0.2092 0.2456 REMARK 3 8 2.9100 - 2.7800 0.97 2866 182 0.2161 0.2798 REMARK 3 9 2.7800 - 2.6700 0.98 2928 142 0.2156 0.2565 REMARK 3 10 2.6700 - 2.5800 0.98 2924 158 0.2033 0.2521 REMARK 3 11 2.5800 - 2.5000 0.98 2928 157 0.2098 0.2455 REMARK 3 12 2.5000 - 2.4300 0.93 2775 152 0.1999 0.2377 REMARK 3 13 2.4300 - 2.3600 0.88 2644 112 0.1969 0.2303 REMARK 3 14 2.3600 - 2.3100 0.77 2247 132 0.2156 0.2923 REMARK 3 15 2.3100 - 2.2500 0.62 1880 59 0.2089 0.2584 REMARK 3 16 2.2500 - 2.2100 0.49 1491 69 0.2112 0.2858 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8447 33.6967 90.6290 REMARK 3 T TENSOR REMARK 3 T11: 0.3341 T22: 0.4614 REMARK 3 T33: 0.2945 T12: 0.1453 REMARK 3 T13: -0.3293 T23: 0.0888 REMARK 3 L TENSOR REMARK 3 L11: 0.3731 L22: 0.4171 REMARK 3 L33: 0.3081 L12: -0.1003 REMARK 3 L13: -0.2048 L23: 0.2603 REMARK 3 S TENSOR REMARK 3 S11: -0.1905 S12: -0.7030 S13: -0.0248 REMARK 3 S21: 0.5594 S22: 0.2421 S23: -0.3072 REMARK 3 S31: 0.5319 S32: 0.7357 S33: 0.3832 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.0271 32.5878 73.6859 REMARK 3 T TENSOR REMARK 3 T11: 0.2022 T22: 0.1743 REMARK 3 T33: 0.1872 T12: 0.0213 REMARK 3 T13: 0.0087 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.0402 L22: 0.7898 REMARK 3 L33: 1.3206 L12: 0.2739 REMARK 3 L13: -0.5303 L23: 0.1487 REMARK 3 S TENSOR REMARK 3 S11: -0.1743 S12: 0.0288 S13: -0.0989 REMARK 3 S21: 0.0938 S22: 0.0019 S23: 0.0652 REMARK 3 S31: 0.1667 S32: -0.0289 S33: -0.0012 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 309 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6153 19.2935 66.0652 REMARK 3 T TENSOR REMARK 3 T11: 0.5572 T22: 0.3533 REMARK 3 T33: 0.4531 T12: 0.0673 REMARK 3 T13: 0.1842 T23: 0.1123 REMARK 3 L TENSOR REMARK 3 L11: -0.0089 L22: 0.0213 REMARK 3 L33: 0.0824 L12: -0.0255 REMARK 3 L13: -0.0343 L23: 0.0277 REMARK 3 S TENSOR REMARK 3 S11: -0.3058 S12: -0.1785 S13: -0.4807 REMARK 3 S21: 0.2885 S22: 0.1738 S23: -0.1478 REMARK 3 S31: 0.3375 S32: -0.0179 S33: 0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5401 28.2782 81.9664 REMARK 3 T TENSOR REMARK 3 T11: 0.2823 T22: 0.3060 REMARK 3 T33: 0.3271 T12: 0.1008 REMARK 3 T13: 0.0084 T23: 0.0817 REMARK 3 L TENSOR REMARK 3 L11: 0.0906 L22: 0.0239 REMARK 3 L33: 0.1830 L12: 0.0219 REMARK 3 L13: 0.0926 L23: 0.0457 REMARK 3 S TENSOR REMARK 3 S11: -0.0369 S12: -0.0833 S13: -0.1674 REMARK 3 S21: 0.0171 S22: 0.0154 S23: -0.2396 REMARK 3 S31: 0.1468 S32: 0.2404 S33: 0.0081 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6073 38.1866 47.4983 REMARK 3 T TENSOR REMARK 3 T11: 0.1574 T22: 0.1551 REMARK 3 T33: 0.1785 T12: -0.0225 REMARK 3 T13: -0.0292 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.9287 L22: 0.8406 REMARK 3 L33: 0.9943 L12: -0.1668 REMARK 3 L13: -0.7053 L23: -0.0630 REMARK 3 S TENSOR REMARK 3 S11: 0.1119 S12: 0.0702 S13: 0.1148 REMARK 3 S21: 0.0242 S22: 0.0394 S23: -0.0639 REMARK 3 S31: -0.0368 S32: -0.0459 S33: 0.0045 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8915 35.0093 45.0894 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.2273 REMARK 3 T33: 0.2377 T12: -0.0259 REMARK 3 T13: 0.0187 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.3294 L22: 0.3264 REMARK 3 L33: 0.4347 L12: -0.2289 REMARK 3 L13: 0.0408 L23: 0.1524 REMARK 3 S TENSOR REMARK 3 S11: 0.0917 S12: -0.0432 S13: 0.0631 REMARK 3 S21: -0.0085 S22: -0.0497 S23: -0.0961 REMARK 3 S31: 0.0007 S32: 0.1292 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 269 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3654 50.9037 55.7821 REMARK 3 T TENSOR REMARK 3 T11: 0.3118 T22: 0.1967 REMARK 3 T33: 0.2884 T12: 0.0120 REMARK 3 T13: 0.0491 T23: -0.0746 REMARK 3 L TENSOR REMARK 3 L11: 0.2560 L22: 0.2364 REMARK 3 L33: 0.1396 L12: 0.1463 REMARK 3 L13: -0.0966 L23: -0.1385 REMARK 3 S TENSOR REMARK 3 S11: 0.0643 S12: -0.0106 S13: 0.5177 REMARK 3 S21: 0.2146 S22: 0.2085 S23: -0.0156 REMARK 3 S31: -0.3825 S32: -0.1536 S33: 0.0817 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 309 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1630 52.6452 56.0384 REMARK 3 T TENSOR REMARK 3 T11: 0.4607 T22: 0.2972 REMARK 3 T33: 0.5088 T12: -0.0556 REMARK 3 T13: 0.0637 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.0597 L22: 0.0242 REMARK 3 L33: -0.0081 L12: 0.0103 REMARK 3 L13: 0.0051 L23: 0.0200 REMARK 3 S TENSOR REMARK 3 S11: -0.0873 S12: 0.0010 S13: 0.3765 REMARK 3 S21: 0.1744 S22: 0.2012 S23: -0.1717 REMARK 3 S31: -0.4810 S32: 0.2750 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 329 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1918 43.6148 59.7821 REMARK 3 T TENSOR REMARK 3 T11: 0.3074 T22: 0.2596 REMARK 3 T33: 0.2690 T12: -0.0478 REMARK 3 T13: 0.0073 T23: -0.0836 REMARK 3 L TENSOR REMARK 3 L11: 0.2954 L22: 0.0574 REMARK 3 L33: 0.0650 L12: -0.1662 REMARK 3 L13: -0.0246 L23: 0.0270 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: -0.1893 S13: 0.1442 REMARK 3 S21: 0.2766 S22: 0.0423 S23: -0.1930 REMARK 3 S31: -0.0828 S32: 0.1415 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97913 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49810 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.66500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 6NJK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE-CITRATE PH 4.2, 1.6M REMARK 280 SODIUM PHOSPHATE DIBASIC, 0.4M POTASSIUM PHOSPHATE MONOBASIC, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 82.98900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 82.98900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 29 OG REMARK 470 ASN B 30 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 671 O HOH A 676 2.07 REMARK 500 O HOH B 649 O HOH B 684 2.15 REMARK 500 O HOH A 503 O HOH A 663 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 241 24.13 -156.48 REMARK 500 ALA A 287 -157.38 -103.95 REMARK 500 ILE A 289 -46.39 70.75 REMARK 500 ASN A 358 42.82 -94.37 REMARK 500 SER B 204 36.29 -140.58 REMARK 500 ASP B 226 15.99 59.28 REMARK 500 TYR B 241 25.54 -151.03 REMARK 500 ALA B 287 -156.09 -104.40 REMARK 500 ILE B 289 -47.41 71.53 REMARK 500 LYS B 332 119.70 -160.35 REMARK 500 ASN B 358 39.56 -89.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP97225 RELATED DB: TARGETTRACK DBREF 7MQN A 31 379 UNP Q3IVS9 Q3IVS9_RHOS4 31 379 DBREF 7MQN B 31 379 UNP Q3IVS9 Q3IVS9_RHOS4 31 379 SEQADV 7MQN SER A 29 UNP Q3IVS9 EXPRESSION TAG SEQADV 7MQN ASN A 30 UNP Q3IVS9 EXPRESSION TAG SEQADV 7MQN SER B 29 UNP Q3IVS9 EXPRESSION TAG SEQADV 7MQN ASN B 30 UNP Q3IVS9 EXPRESSION TAG SEQRES 1 A 351 SER ASN ALA ALA ALA ALA ALA PHE GLU SER VAL ILE GLU SEQRES 2 A 351 GLU HIS ASP ILE PRO GLY LEU VAL VAL GLY VAL THR HIS SEQRES 3 A 351 GLY GLY ARG HIS SER PHE TYR GLN THR GLY LEU ALA SER SEQRES 4 A 351 ARG GLU ASP GLN GLN PRO VAL THR PRO ASP THR LEU PHE SEQRES 5 A 351 GLU LEU GLY SER ILE SER LYS ILE PHE ASN VAL THR LEU SEQRES 6 A 351 ALA ALA LEU ALA GLU GLU ARG GLY ALA LEU SER LEU ASP SEQRES 7 A 351 ALA PRO VAL ALA ASP TYR LEU PRO SER LEU ARG GLY SER SEQRES 8 A 351 PRO ALA GLY GLU LEU THR LEU ILE ASP LEU ALA THR HIS SEQRES 9 A 351 HIS THR GLY GLY LEU PRO LEU GLN VAL PRO ASP GLU VAL SEQRES 10 A 351 ALA ASP VAL ASP ARG LEU VAL ASP TRP LEU ARG SER TRP SEQRES 11 A 351 ARG PRO PRO GLU PRO GLY THR ARG SER TYR SER ASN ILE SEQRES 12 A 351 SER ILE GLY LEU LEU GLY HIS ILE THR ALA GLY VAL LEU SEQRES 13 A 351 GLY MET SER TYR ALA ASP ALA SER GLN THR VAL ILE PHE SEQRES 14 A 351 PRO ALA LEU GLY LEU LYS SER THR TRP ILE ASP VAL PRO SEQRES 15 A 351 THR ASP ALA MET GLY ARG TYR ALA PHE GLY TYR ASP ARG SEQRES 16 A 351 LYS THR ASP ALA PRO THR ARG VAL THR PRO GLY VAL LEU SEQRES 17 A 351 ASP ASP GLU ALA TYR GLY VAL LYS SER SER ALA ARG ASP SEQRES 18 A 351 MET LEU THR LEU LEU ASP LEU GLU LEU GLY THR GLY THR SEQRES 19 A 351 ALA SER PRO GLU VAL GLN THR ALA VAL ALA THR THR GLN SEQRES 20 A 351 GLU GLY ARG PHE GLN THR ARG LEU TYR THR GLN ALA MET SEQRES 21 A 351 ILE TRP GLU ALA TYR PRO TRP PRO VAL ASP PRO GLU ARG SEQRES 22 A 351 LEU VAL GLU GLY ASN GLY TYR ASP PHE ILE LEU GLN PRO SEQRES 23 A 351 GLN PRO VAL ASP GLU VAL ASP THR THR PRO ASP ARG ARG SEQRES 24 A 351 VAL ILE LEU ASN LYS THR GLY SER THR ASN GLY PHE GLY SEQRES 25 A 351 GLY TYR ILE ALA ILE VAL PRO SER GLU ASP LEU GLY VAL SEQRES 26 A 351 VAL VAL LEU ALA ASN ARG ASN TYR PRO ASN GLU ALA ARG SEQRES 27 A 351 VAL ARG ALA THR TYR ASP LEU ILE THR HIS ILE LEU ALA SEQRES 1 B 351 SER ASN ALA ALA ALA ALA ALA PHE GLU SER VAL ILE GLU SEQRES 2 B 351 GLU HIS ASP ILE PRO GLY LEU VAL VAL GLY VAL THR HIS SEQRES 3 B 351 GLY GLY ARG HIS SER PHE TYR GLN THR GLY LEU ALA SER SEQRES 4 B 351 ARG GLU ASP GLN GLN PRO VAL THR PRO ASP THR LEU PHE SEQRES 5 B 351 GLU LEU GLY SER ILE SER LYS ILE PHE ASN VAL THR LEU SEQRES 6 B 351 ALA ALA LEU ALA GLU GLU ARG GLY ALA LEU SER LEU ASP SEQRES 7 B 351 ALA PRO VAL ALA ASP TYR LEU PRO SER LEU ARG GLY SER SEQRES 8 B 351 PRO ALA GLY GLU LEU THR LEU ILE ASP LEU ALA THR HIS SEQRES 9 B 351 HIS THR GLY GLY LEU PRO LEU GLN VAL PRO ASP GLU VAL SEQRES 10 B 351 ALA ASP VAL ASP ARG LEU VAL ASP TRP LEU ARG SER TRP SEQRES 11 B 351 ARG PRO PRO GLU PRO GLY THR ARG SER TYR SER ASN ILE SEQRES 12 B 351 SER ILE GLY LEU LEU GLY HIS ILE THR ALA GLY VAL LEU SEQRES 13 B 351 GLY MET SER TYR ALA ASP ALA SER GLN THR VAL ILE PHE SEQRES 14 B 351 PRO ALA LEU GLY LEU LYS SER THR TRP ILE ASP VAL PRO SEQRES 15 B 351 THR ASP ALA MET GLY ARG TYR ALA PHE GLY TYR ASP ARG SEQRES 16 B 351 LYS THR ASP ALA PRO THR ARG VAL THR PRO GLY VAL LEU SEQRES 17 B 351 ASP ASP GLU ALA TYR GLY VAL LYS SER SER ALA ARG ASP SEQRES 18 B 351 MET LEU THR LEU LEU ASP LEU GLU LEU GLY THR GLY THR SEQRES 19 B 351 ALA SER PRO GLU VAL GLN THR ALA VAL ALA THR THR GLN SEQRES 20 B 351 GLU GLY ARG PHE GLN THR ARG LEU TYR THR GLN ALA MET SEQRES 21 B 351 ILE TRP GLU ALA TYR PRO TRP PRO VAL ASP PRO GLU ARG SEQRES 22 B 351 LEU VAL GLU GLY ASN GLY TYR ASP PHE ILE LEU GLN PRO SEQRES 23 B 351 GLN PRO VAL ASP GLU VAL ASP THR THR PRO ASP ARG ARG SEQRES 24 B 351 VAL ILE LEU ASN LYS THR GLY SER THR ASN GLY PHE GLY SEQRES 25 B 351 GLY TYR ILE ALA ILE VAL PRO SER GLU ASP LEU GLY VAL SEQRES 26 B 351 VAL VAL LEU ALA ASN ARG ASN TYR PRO ASN GLU ALA ARG SEQRES 27 B 351 VAL ARG ALA THR TYR ASP LEU ILE THR HIS ILE LEU ALA HET PO4 A 401 5 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 B 401 5 HET PO4 B 402 5 HET PO4 B 403 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 6(O4 P 3-) FORMUL 9 HOH *386(H2 O) HELIX 1 AA1 ASN A 30 HIS A 43 1 14 HELIX 2 AA2 ILE A 85 ARG A 100 1 16 HELIX 3 AA3 PRO A 108 TYR A 112 5 5 HELIX 4 AA4 LEU A 113 ARG A 117 5 5 HELIX 5 AA5 SER A 119 LEU A 124 1 6 HELIX 6 AA6 THR A 125 THR A 131 1 7 HELIX 7 AA7 ASP A 147 SER A 157 1 11 HELIX 8 AA8 SER A 169 GLY A 185 1 17 HELIX 9 AA9 SER A 187 VAL A 195 1 9 HELIX 10 AB1 VAL A 195 LEU A 200 1 6 HELIX 11 AB2 PRO A 210 TYR A 217 5 8 HELIX 12 AB3 LEU A 236 GLY A 242 1 7 HELIX 13 AB4 ALA A 247 LEU A 258 1 12 HELIX 14 AB5 SER A 264 GLU A 276 1 13 HELIX 15 AB6 ASP A 298 ASN A 306 1 9 HELIX 16 AB7 GLY A 307 LEU A 312 1 6 HELIX 17 AB8 PRO A 347 GLU A 349 5 3 HELIX 18 AB9 PRO A 362 ALA A 379 1 18 HELIX 19 AC1 ASN B 30 ASP B 44 1 15 HELIX 20 AC2 ILE B 85 ARG B 100 1 16 HELIX 21 AC3 PRO B 108 TYR B 112 5 5 HELIX 22 AC4 LEU B 113 ARG B 117 5 5 HELIX 23 AC5 SER B 119 LEU B 124 1 6 HELIX 24 AC6 THR B 125 THR B 131 1 7 HELIX 25 AC7 ASP B 147 TRP B 158 1 12 HELIX 26 AC8 SER B 169 LEU B 184 1 16 HELIX 27 AC9 SER B 187 VAL B 195 1 9 HELIX 28 AD1 VAL B 195 LEU B 200 1 6 HELIX 29 AD2 PRO B 210 TYR B 217 5 8 HELIX 30 AD3 LEU B 236 GLY B 242 1 7 HELIX 31 AD4 ALA B 247 LEU B 258 1 12 HELIX 32 AD5 SER B 264 GLU B 276 1 13 HELIX 33 AD6 ASP B 298 ASN B 306 1 9 HELIX 34 AD7 GLY B 307 LEU B 312 1 6 HELIX 35 AD8 PRO B 347 GLU B 349 5 3 HELIX 36 AD9 PRO B 362 LEU B 378 1 17 SHEET 1 AA110 GLN A 72 PRO A 73 0 SHEET 2 AA110 ARG A 57 SER A 67 -1 N ALA A 66 O GLN A 72 SHEET 3 AA110 GLY A 47 HIS A 54 -1 N VAL A 52 O SER A 59 SHEET 4 AA110 LEU A 351 ALA A 357 -1 O GLY A 352 N THR A 53 SHEET 5 AA110 GLY A 340 VAL A 346 -1 N TYR A 342 O VAL A 355 SHEET 6 AA110 VAL A 328 SER A 335 -1 N GLY A 334 O GLY A 341 SHEET 7 AA110 GLU A 291 PRO A 294 -1 N TYR A 293 O ILE A 329 SHEET 8 AA110 THR A 285 GLN A 286 -1 N THR A 285 O ALA A 292 SHEET 9 AA110 PHE A 279 GLN A 280 -1 N PHE A 279 O GLN A 286 SHEET 10 AA110 ASP A 318 GLU A 319 -1 O ASP A 318 N GLN A 280 SHEET 1 AA2 2 LEU A 79 GLU A 81 0 SHEET 2 AA2 2 LYS A 244 SER A 246 -1 O SER A 245 N PHE A 80 SHEET 1 AA3 2 GLY A 220 TYR A 221 0 SHEET 2 AA3 2 PRO A 228 THR A 229 -1 O THR A 229 N GLY A 220 SHEET 1 AA410 GLN B 72 PRO B 73 0 SHEET 2 AA410 ARG B 57 SER B 67 -1 N ALA B 66 O GLN B 72 SHEET 3 AA410 GLY B 47 HIS B 54 -1 N VAL B 50 O TYR B 61 SHEET 4 AA410 LEU B 351 ALA B 357 -1 O GLY B 352 N THR B 53 SHEET 5 AA410 PHE B 339 VAL B 346 -1 N VAL B 346 O LEU B 351 SHEET 6 AA410 VAL B 328 THR B 336 -1 N GLY B 334 O GLY B 341 SHEET 7 AA410 GLU B 291 PRO B 294 -1 N TYR B 293 O ILE B 329 SHEET 8 AA410 THR B 285 GLN B 286 -1 N THR B 285 O ALA B 292 SHEET 9 AA410 PHE B 279 GLN B 280 -1 N PHE B 279 O GLN B 286 SHEET 10 AA410 ASP B 318 GLU B 319 -1 O ASP B 318 N GLN B 280 SHEET 1 AA5 2 LEU B 79 GLU B 81 0 SHEET 2 AA5 2 LYS B 244 SER B 246 -1 O SER B 245 N PHE B 80 SHEET 1 AA6 2 GLY B 220 TYR B 221 0 SHEET 2 AA6 2 PRO B 228 THR B 229 -1 O THR B 229 N GLY B 220 CISPEP 1 TRP A 295 PRO A 296 0 -2.83 CISPEP 2 TRP B 295 PRO B 296 0 2.08 SITE 1 AC1 8 SER A 84 TYR A 168 LYS A 332 THR A 333 SITE 2 AC1 8 GLY A 334 PO4 A 403 HOH A 502 HOH A 511 SITE 1 AC2 7 SER A 187 TYR A 188 ALA A 189 ASP A 238 SITE 2 AC2 7 GLU A 239 HOH A 528 HOH A 621 SITE 1 AC3 7 TYR A 308 SER A 335 ASN A 363 ARG A 366 SITE 2 AC3 7 PO4 A 401 HOH A 510 HOH A 608 SITE 1 AC4 9 SER B 84 TYR B 168 LYS B 332 THR B 333 SITE 2 AC4 9 GLY B 334 PO4 B 402 HOH B 509 HOH B 511 SITE 3 AC4 9 HOH B 657 SITE 1 AC5 5 TYR B 308 SER B 335 ASN B 363 PO4 B 401 SITE 2 AC5 5 HOH B 619 SITE 1 AC6 8 TYR B 188 ALA B 189 ASP B 238 GLU B 239 SITE 2 AC6 8 HOH B 540 HOH B 548 HOH B 553 HOH B 598 CRYST1 165.978 72.090 115.280 90.00 132.79 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006025 0.000000 0.005577 0.00000 SCALE2 0.000000 0.013872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011820 0.00000