HEADER GENE REGULATION 07-MAY-21 7MR5 TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN (BD1) OF HUMAN BRD4 BOUND TITLE 2 TO GXH-II-052 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN HUNK1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS BROMOSPORINE, BRD4, BRD, BET, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAN,E.SCHONBRUNN REVDAT 4 18-OCT-23 7MR5 1 REMARK REVDAT 3 24-AUG-22 7MR5 1 JRNL REVDAT 2 03-AUG-22 7MR5 1 JRNL REVDAT 1 18-MAY-22 7MR5 0 JRNL AUTH X.GUAN,N.CHERYALA,R.M.KARIM,A.CHAN,N.BERNDT,J.QI,G.I.GEORG, JRNL AUTH 2 E.SCHONBRUNN JRNL TITL BIVALENT BET BROMODOMAIN INHIBITORS CONFER INCREASED POTENCY JRNL TITL 2 AND SELECTIVITY FOR BRDT VIA PROTEIN CONFORMATIONAL JRNL TITL 3 PLASTICITY. JRNL REF J.MED.CHEM. V. 65 10441 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35867655 JRNL DOI 10.1021/ACS.JMEDCHEM.2C00453 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 20281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3680 - 3.7833 0.91 2139 135 0.1444 0.1779 REMARK 3 2 3.7833 - 3.0039 0.81 1925 121 0.1569 0.2154 REMARK 3 3 3.0039 - 2.6245 0.92 2191 137 0.1715 0.2170 REMARK 3 4 2.6245 - 2.3846 0.93 2200 138 0.1726 0.2427 REMARK 3 5 2.3846 - 2.2138 0.94 2229 140 0.1585 0.1993 REMARK 3 6 2.2138 - 2.0833 0.95 2235 140 0.1584 0.2310 REMARK 3 7 2.0833 - 1.9790 0.88 2080 130 0.1623 0.2351 REMARK 3 8 1.9790 - 1.8929 0.83 1951 122 0.1650 0.2051 REMARK 3 9 1.8929 - 1.8200 0.89 2134 134 0.1739 0.2566 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2310 REMARK 3 ANGLE : 1.045 3151 REMARK 3 CHIRALITY : 0.047 321 REMARK 3 PLANARITY : 0.006 401 REMARK 3 DIHEDRAL : 12.442 1683 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7744 24.1106 -36.9795 REMARK 3 T TENSOR REMARK 3 T11: 0.0887 T22: 0.0955 REMARK 3 T33: 0.1067 T12: -0.0422 REMARK 3 T13: -0.0071 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 6.9915 L22: 5.7409 REMARK 3 L33: 4.5674 L12: -5.8422 REMARK 3 L13: -4.4193 L23: 3.4364 REMARK 3 S TENSOR REMARK 3 S11: -0.1413 S12: -0.2416 S13: 0.0972 REMARK 3 S21: 0.0840 S22: 0.0987 S23: 0.0501 REMARK 3 S31: -0.0790 S32: 0.1327 S33: 0.0318 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1095 20.3435 -48.1173 REMARK 3 T TENSOR REMARK 3 T11: 0.0699 T22: 0.1697 REMARK 3 T33: 0.1364 T12: -0.0334 REMARK 3 T13: 0.0247 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 5.6756 L22: 6.7970 REMARK 3 L33: 3.0112 L12: 3.1951 REMARK 3 L13: -0.6233 L23: -0.0803 REMARK 3 S TENSOR REMARK 3 S11: -0.2210 S12: 0.2761 S13: -0.1950 REMARK 3 S21: -0.4113 S22: 0.0142 S23: -0.5156 REMARK 3 S31: -0.0479 S32: -0.0054 S33: 0.1497 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0740 30.7280 -45.6450 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.0925 REMARK 3 T33: 0.1744 T12: -0.0327 REMARK 3 T13: 0.0202 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 4.8251 L22: 2.4783 REMARK 3 L33: 6.6522 L12: -2.2995 REMARK 3 L13: -2.8682 L23: 3.1350 REMARK 3 S TENSOR REMARK 3 S11: 0.2541 S12: 0.0120 S13: 0.5214 REMARK 3 S21: -0.0875 S22: 0.0107 S23: -0.2243 REMARK 3 S31: -0.3532 S32: 0.2188 S33: -0.1062 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0342 39.9483 -30.7849 REMARK 3 T TENSOR REMARK 3 T11: 0.3831 T22: 0.5464 REMARK 3 T33: 0.3194 T12: 0.0766 REMARK 3 T13: -0.0376 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 1.5924 L22: 3.6903 REMARK 3 L33: 4.7386 L12: -0.3277 REMARK 3 L13: 1.2349 L23: -0.0794 REMARK 3 S TENSOR REMARK 3 S11: -0.1270 S12: -1.4352 S13: -0.4901 REMARK 3 S21: 1.0908 S22: 0.5918 S23: -0.0324 REMARK 3 S31: -0.5044 S32: -1.0602 S33: -0.4324 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0540 -0.7417 -73.6127 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.2044 REMARK 3 T33: 0.2045 T12: 0.0246 REMARK 3 T13: -0.0398 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 2.2600 L22: 6.4433 REMARK 3 L33: 3.0876 L12: 2.7759 REMARK 3 L13: -2.6025 L23: -2.9769 REMARK 3 S TENSOR REMARK 3 S11: 0.1629 S12: -0.0366 S13: 0.1291 REMARK 3 S21: -0.0701 S22: 0.0983 S23: 0.2830 REMARK 3 S31: 0.2260 S32: 0.3272 S33: 0.0222 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9466 14.2215 -84.2126 REMARK 3 T TENSOR REMARK 3 T11: 0.2709 T22: 0.2395 REMARK 3 T33: 0.2268 T12: 0.0525 REMARK 3 T13: 0.0462 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 2.9279 L22: 9.6389 REMARK 3 L33: 7.9350 L12: -0.4377 REMARK 3 L13: -1.2308 L23: 3.1999 REMARK 3 S TENSOR REMARK 3 S11: 0.0631 S12: 0.0711 S13: -0.4031 REMARK 3 S21: 0.1926 S22: -0.3425 S23: -0.1447 REMARK 3 S31: 1.0904 S32: 0.2287 S33: 0.2531 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2766 20.1848 -67.4520 REMARK 3 T TENSOR REMARK 3 T11: 0.1414 T22: 0.1540 REMARK 3 T33: 0.1242 T12: -0.0160 REMARK 3 T13: 0.0025 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.0870 L22: 1.4144 REMARK 3 L33: 5.8601 L12: -0.4268 REMARK 3 L13: -0.1968 L23: -0.3788 REMARK 3 S TENSOR REMARK 3 S11: 0.1078 S12: -0.0132 S13: 0.1761 REMARK 3 S21: 0.0831 S22: -0.1362 S23: 0.0060 REMARK 3 S31: -0.7427 S32: 0.3940 S33: 0.0037 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3880 4.4528 -60.4274 REMARK 3 T TENSOR REMARK 3 T11: 0.1948 T22: 0.1324 REMARK 3 T33: 0.1744 T12: -0.0136 REMARK 3 T13: -0.0030 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 1.7388 L22: 1.3196 REMARK 3 L33: 3.3622 L12: 0.4558 REMARK 3 L13: 0.5530 L23: 1.3100 REMARK 3 S TENSOR REMARK 3 S11: 0.2057 S12: -0.1423 S13: -0.3950 REMARK 3 S21: 0.3848 S22: -0.0269 S23: -0.2908 REMARK 3 S31: 0.6265 S32: -0.1405 S33: 0.0589 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7622 6.7207 -71.1758 REMARK 3 T TENSOR REMARK 3 T11: 0.0960 T22: 0.1104 REMARK 3 T33: 0.1216 T12: 0.0136 REMARK 3 T13: 0.0022 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 5.1376 L22: 2.2677 REMARK 3 L33: 2.4885 L12: 1.4919 REMARK 3 L13: -2.4676 L23: -0.9668 REMARK 3 S TENSOR REMARK 3 S11: -0.1425 S12: 0.1461 S13: 0.0140 REMARK 3 S21: -0.0055 S22: 0.0224 S23: 0.0820 REMARK 3 S31: 0.0896 S32: 0.0329 S33: 0.1355 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5931 14.7972 -80.4166 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.1577 REMARK 3 T33: 0.1084 T12: 0.0052 REMARK 3 T13: 0.0194 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 3.3344 L22: 4.3581 REMARK 3 L33: 5.3816 L12: 0.7123 REMARK 3 L13: -2.3198 L23: -2.8119 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: 0.0862 S13: -0.0978 REMARK 3 S21: -0.0818 S22: -0.0668 S23: -0.0305 REMARK 3 S31: -0.1329 S32: 0.4754 S33: 0.0855 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3847 14.1329 -71.1664 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.1187 REMARK 3 T33: 0.1155 T12: 0.0469 REMARK 3 T13: -0.0196 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 6.8942 L22: 5.3612 REMARK 3 L33: 5.3966 L12: 5.7848 REMARK 3 L13: -4.6650 L23: -4.2169 REMARK 3 S TENSOR REMARK 3 S11: -0.0981 S12: 0.2780 S13: 0.2357 REMARK 3 S21: -0.2209 S22: 0.1494 S23: 0.1347 REMARK 3 S31: 0.1446 S32: -0.0926 S33: -0.0269 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6205 10.2596 -59.6736 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.2024 REMARK 3 T33: 0.2991 T12: 0.0416 REMARK 3 T13: 0.1185 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.6993 L22: 0.8015 REMARK 3 L33: 6.2016 L12: -0.5475 REMARK 3 L13: -0.5380 L23: -1.0997 REMARK 3 S TENSOR REMARK 3 S11: 0.2194 S12: -0.3445 S13: 0.1634 REMARK 3 S21: 0.8701 S22: -0.1798 S23: 1.1389 REMARK 3 S31: -0.3370 S32: -0.6326 S33: 0.2829 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2368 20.8371 -62.5802 REMARK 3 T TENSOR REMARK 3 T11: 0.1268 T22: 0.0917 REMARK 3 T33: 0.1252 T12: 0.0099 REMARK 3 T13: -0.0097 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 6.4636 L22: 6.9860 REMARK 3 L33: 5.2742 L12: 4.3711 REMARK 3 L13: -3.7949 L23: -3.0203 REMARK 3 S TENSOR REMARK 3 S11: 0.0927 S12: -0.1838 S13: 0.4515 REMARK 3 S21: -0.1084 S22: -0.1390 S23: 0.2297 REMARK 3 S31: -0.2269 S32: 0.0660 S33: -0.0955 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1907 29.8070 -77.7584 REMARK 3 T TENSOR REMARK 3 T11: 0.4748 T22: 0.4922 REMARK 3 T33: 0.3807 T12: -0.0017 REMARK 3 T13: -0.0206 T23: 0.0577 REMARK 3 L TENSOR REMARK 3 L11: 7.4769 L22: 8.5167 REMARK 3 L33: 2.7818 L12: 1.6538 REMARK 3 L13: 1.0700 L23: -1.2102 REMARK 3 S TENSOR REMARK 3 S11: 0.0699 S12: 2.0864 S13: 0.5992 REMARK 3 S21: -1.2147 S22: 0.2881 S23: -0.2819 REMARK 3 S31: -0.3843 S32: 0.3661 S33: -0.0037 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7484 9.9603 -34.1893 REMARK 3 T TENSOR REMARK 3 T11: 0.1838 T22: 0.1844 REMARK 3 T33: 0.1432 T12: -0.0280 REMARK 3 T13: -0.0033 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 7.7500 L22: 4.1441 REMARK 3 L33: 3.4884 L12: -3.1330 REMARK 3 L13: -1.8649 L23: 3.6904 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: 0.1642 S13: -0.2860 REMARK 3 S21: 0.1885 S22: -0.0418 S23: 0.1969 REMARK 3 S31: 0.4044 S32: -0.3187 S33: 0.0467 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8264 24.0527 -24.0989 REMARK 3 T TENSOR REMARK 3 T11: 0.3002 T22: 0.2295 REMARK 3 T33: 0.2077 T12: -0.0724 REMARK 3 T13: 0.0172 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 3.0644 L22: 2.2777 REMARK 3 L33: 4.8882 L12: 0.4859 REMARK 3 L13: -3.0997 L23: 0.8288 REMARK 3 S TENSOR REMARK 3 S11: 0.1955 S12: -0.0803 S13: -0.2845 REMARK 3 S21: 0.2902 S22: -0.6352 S23: 0.2571 REMARK 3 S31: 0.8616 S32: 0.1207 S33: 0.4036 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3801 32.1328 -36.6992 REMARK 3 T TENSOR REMARK 3 T11: 0.1214 T22: 0.1682 REMARK 3 T33: 0.1677 T12: 0.0381 REMARK 3 T13: -0.0219 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 2.6029 L22: 4.2301 REMARK 3 L33: 6.8032 L12: -0.4645 REMARK 3 L13: 0.6597 L23: 0.3777 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: 0.2097 S13: 0.1653 REMARK 3 S21: -0.1324 S22: 0.0315 S23: 0.1496 REMARK 3 S31: -0.4422 S32: -0.5132 S33: 0.0879 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6726 26.7361 -48.0593 REMARK 3 T TENSOR REMARK 3 T11: 0.1301 T22: 0.0996 REMARK 3 T33: 0.1350 T12: 0.0076 REMARK 3 T13: -0.0012 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 4.6351 L22: 3.2048 REMARK 3 L33: 5.7794 L12: -2.2153 REMARK 3 L13: -1.1374 L23: 2.4609 REMARK 3 S TENSOR REMARK 3 S11: 0.1744 S12: 0.2725 S13: 0.2297 REMARK 3 S21: -0.1423 S22: -0.2264 S23: 0.0838 REMARK 3 S31: -0.5865 S32: -0.2912 S33: -0.0387 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9180 11.8736 -42.4068 REMARK 3 T TENSOR REMARK 3 T11: 0.1075 T22: 0.1287 REMARK 3 T33: 0.1559 T12: 0.0019 REMARK 3 T13: 0.0369 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.0988 L22: 3.6751 REMARK 3 L33: 3.8473 L12: -0.8732 REMARK 3 L13: 1.3899 L23: -1.5260 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: -0.0091 S13: -0.2832 REMARK 3 S21: -0.1720 S22: -0.1253 S23: 0.0310 REMARK 3 S31: 0.3460 S32: 0.1223 S33: 0.1089 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0242 22.5978 -32.7575 REMARK 3 T TENSOR REMARK 3 T11: 0.0653 T22: 0.1180 REMARK 3 T33: 0.1275 T12: -0.0152 REMARK 3 T13: 0.0174 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.1060 L22: 3.8291 REMARK 3 L33: 6.3951 L12: -1.7335 REMARK 3 L13: -0.9060 L23: 3.1803 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: 0.0528 S13: 0.0964 REMARK 3 S21: 0.1093 S22: -0.2260 S23: 0.2903 REMARK 3 S31: -0.0571 S32: -0.3582 S33: 0.0359 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MR5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20285 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 29.368 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 3.688 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.63 REMARK 200 R MERGE FOR SHELL (I) : 0.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MXF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE MONOHYDRATE, 0.1 REMARK 280 M TRIS HYDROCHLORIDE PH 8.5, 30% W/V POLYETHYLENE GLYCOL 4 000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 159 O HOH A 301 2.15 REMARK 500 O HOH A 307 O HOH A 309 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 312 O HOH A 374 1455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 43 -21.49 -142.09 REMARK 500 ASN A 93 70.93 35.70 REMARK 500 VAL B 69 -59.06 -120.85 REMARK 500 ASN B 140 -168.42 -100.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZMS A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 DBREF 7MR5 A 44 168 UNP O60885 BRD4_HUMAN 44 168 DBREF 7MR5 B 44 168 UNP O60885 BRD4_HUMAN 44 168 SEQADV 7MR5 SER A 42 UNP O60885 EXPRESSION TAG SEQADV 7MR5 MET A 43 UNP O60885 EXPRESSION TAG SEQADV 7MR5 SER B 42 UNP O60885 EXPRESSION TAG SEQADV 7MR5 MET B 43 UNP O60885 EXPRESSION TAG SEQRES 1 A 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 A 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 A 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 A 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 A 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 A 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 A 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 A 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 A 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 A 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU SEQRES 1 B 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 B 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 B 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 B 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 B 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 B 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 B 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 B 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 B 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 B 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU HET ZMS A 201 93 HET EDO A 202 4 HET EDO A 203 4 HETNAM ZMS N,N'-{OXYBIS[(ETHANE-2,1-DIYL)OXY(1-OXOETHANE-2,1- HETNAM 2 ZMS DIYL)PIPERIDINE-1,4-DIYL]}BIS{4-[(4-{4-CHLORO-3-[(2- HETNAM 3 ZMS METHYLPROPANE-2-SULFONYL)AMINO]ANILINO}-5- HETNAM 4 ZMS METHYLPYRIMIDIN-2-YL)AMINO]-2-FLUOROBENZAMIDE} HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZMS C62 H76 CL2 F2 N14 O11 S2 FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *161(H2 O) HELIX 1 AA1 THR A 60 VAL A 69 1 10 HELIX 2 AA2 VAL A 69 LYS A 76 1 8 HELIX 3 AA3 ALA A 80 GLN A 84 5 5 HELIX 4 AA4 ASP A 96 ILE A 101 1 6 HELIX 5 AA5 ASP A 106 ASN A 116 1 11 HELIX 6 AA6 ASN A 121 ASN A 140 1 20 HELIX 7 AA7 ASP A 144 GLU A 163 1 20 HELIX 8 AA8 THR B 60 VAL B 69 1 10 HELIX 9 AA9 VAL B 69 LYS B 76 1 8 HELIX 10 AB1 ALA B 80 GLN B 84 5 5 HELIX 11 AB2 ASP B 88 ASN B 93 1 6 HELIX 12 AB3 ASP B 96 ILE B 101 1 6 HELIX 13 AB4 ASP B 106 ASN B 116 1 11 HELIX 14 AB5 ASN B 121 ASN B 140 1 20 HELIX 15 AB6 ASP B 144 ASN B 162 1 19 SITE 1 AC1 23 PHE A 79 TRP A 81 PRO A 82 VAL A 87 SITE 2 AC1 23 LEU A 92 ASN A 140 ASP A 145 ILE A 146 SITE 3 AC1 23 EDO A 203 HOH A 330 HOH A 342 PRO B 82 SITE 4 AC1 23 PRO B 86 VAL B 87 ASP B 88 LYS B 91 SITE 5 AC1 23 LEU B 92 ASN B 93 LEU B 94 TYR B 139 SITE 6 AC1 23 ASN B 140 GLN B 159 HOH B 236 SITE 1 AC2 5 ILE A 100 ILE A 101 LYS A 102 THR A 103 SITE 2 AC2 5 ASN A 135 SITE 1 AC3 4 ASP A 145 ILE A 146 ZMS A 201 HOH A 355 CRYST1 30.080 39.710 57.180 99.95 104.45 89.99 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033245 -0.000007 0.008705 0.00000 SCALE2 0.000000 0.025183 0.004565 0.00000 SCALE3 0.000000 0.000000 0.018354 0.00000