HEADER GENE REGULATION 07-MAY-21 7MRC TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN (BD1) OF HUMAN BRDT BOUND TITLE 2 TO GXH-II-052 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN TESTIS-SPECIFIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CANCER/TESTIS ANTIGEN 9,CT9,RING3-LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRDT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLIC-HIS KEYWDS BRDT, BRD, BET, GENE REGULATION, CONTRACEPTIVE, CANCER EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAN,E.SCHONBRUNN REVDAT 4 18-OCT-23 7MRC 1 REMARK REVDAT 3 24-AUG-22 7MRC 1 JRNL REVDAT 2 03-AUG-22 7MRC 1 JRNL REVDAT 1 18-MAY-22 7MRC 0 JRNL AUTH X.GUAN,N.CHERYALA,R.M.KARIM,A.CHAN,N.BERNDT,J.QI,G.I.GEORG, JRNL AUTH 2 E.SCHONBRUNN JRNL TITL BIVALENT BET BROMODOMAIN INHIBITORS CONFER INCREASED POTENCY JRNL TITL 2 AND SELECTIVITY FOR BRDT VIA PROTEIN CONFORMATIONAL JRNL TITL 3 PLASTICITY. JRNL REF J.MED.CHEM. V. 65 10441 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35867655 JRNL DOI 10.1021/ACS.JMEDCHEM.2C00453 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 35012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.420 REMARK 3 FREE R VALUE TEST SET COUNT : 1197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.4480 - 3.2231 0.96 3936 139 0.1635 0.1935 REMARK 3 2 3.2231 - 2.5587 0.99 3876 137 0.1835 0.2037 REMARK 3 3 2.5587 - 2.2353 0.99 3798 135 0.1785 0.1908 REMARK 3 4 2.2353 - 2.0310 0.98 3777 133 0.1675 0.1636 REMARK 3 5 2.0310 - 1.8855 0.95 3639 129 0.1732 0.2088 REMARK 3 6 1.8855 - 1.7743 0.98 3744 133 0.1745 0.1746 REMARK 3 7 1.7743 - 1.6855 0.97 3695 131 0.1789 0.2115 REMARK 3 8 1.6855 - 1.6121 0.97 3687 130 0.1814 0.2471 REMARK 3 9 1.6121 - 1.5500 0.97 3663 130 0.1914 0.2340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2089 REMARK 3 ANGLE : 1.028 2832 REMARK 3 CHIRALITY : 0.044 284 REMARK 3 PLANARITY : 0.006 353 REMARK 3 DIHEDRAL : 10.935 1949 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9037 -18.0867 -21.0685 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.5101 REMARK 3 T33: 0.3815 T12: -0.1395 REMARK 3 T13: -0.0240 T23: 0.1273 REMARK 3 L TENSOR REMARK 3 L11: 6.5247 L22: 4.6353 REMARK 3 L33: 0.0704 L12: 0.3902 REMARK 3 L13: 0.3294 L23: 0.5194 REMARK 3 S TENSOR REMARK 3 S11: -0.1566 S12: 0.7987 S13: 0.0171 REMARK 3 S21: -0.3601 S22: 0.2222 S23: 0.7616 REMARK 3 S31: 0.0744 S32: -0.4354 S33: 0.4178 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6621 -16.1614 -12.0755 REMARK 3 T TENSOR REMARK 3 T11: 0.2571 T22: 0.2347 REMARK 3 T33: 0.1641 T12: -0.0504 REMARK 3 T13: 0.0488 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.6547 L22: 1.1309 REMARK 3 L33: 4.8642 L12: 0.6753 REMARK 3 L13: 1.9258 L23: 2.0950 REMARK 3 S TENSOR REMARK 3 S11: 0.1209 S12: -0.1633 S13: -0.3521 REMARK 3 S21: 0.7157 S22: 0.0657 S23: 0.3593 REMARK 3 S31: 0.4116 S32: -0.3238 S33: -0.2596 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1831 -1.6427 -10.5416 REMARK 3 T TENSOR REMARK 3 T11: 0.2494 T22: 0.1690 REMARK 3 T33: 0.1418 T12: 0.0019 REMARK 3 T13: 0.0163 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.2456 L22: 1.9611 REMARK 3 L33: 0.9449 L12: 1.7889 REMARK 3 L13: 0.7932 L23: 0.5317 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: -0.0279 S13: 0.0401 REMARK 3 S21: 0.3957 S22: -0.0170 S23: 0.0986 REMARK 3 S31: -0.0388 S32: -0.0405 S33: 0.0172 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2493 -4.5210 -21.0836 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.2121 REMARK 3 T33: 0.1563 T12: 0.0264 REMARK 3 T13: -0.0301 T23: 0.0505 REMARK 3 L TENSOR REMARK 3 L11: 1.7767 L22: 1.5590 REMARK 3 L33: 1.4862 L12: -0.0716 REMARK 3 L13: -0.2525 L23: -0.0261 REMARK 3 S TENSOR REMARK 3 S11: -0.1235 S12: 0.0506 S13: 0.0408 REMARK 3 S21: -0.0415 S22: 0.2112 S23: 0.3476 REMARK 3 S31: -0.1632 S32: -0.4214 S33: 0.0401 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3474 -4.4937 -19.9389 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.3044 REMARK 3 T33: 0.3216 T12: 0.0472 REMARK 3 T13: 0.0233 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 5.1619 L22: 2.2938 REMARK 3 L33: 1.6369 L12: -2.9888 REMARK 3 L13: -0.6938 L23: -0.5311 REMARK 3 S TENSOR REMARK 3 S11: -0.1028 S12: 0.4402 S13: -0.3231 REMARK 3 S21: -0.1587 S22: -0.3706 S23: -1.1431 REMARK 3 S31: -0.0373 S32: 1.0253 S33: 0.4137 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1229 -17.8255 -20.5953 REMARK 3 T TENSOR REMARK 3 T11: 0.1968 T22: 0.1294 REMARK 3 T33: 0.0832 T12: -0.0259 REMARK 3 T13: -0.0218 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 4.0885 L22: 5.3699 REMARK 3 L33: 3.1630 L12: 1.3918 REMARK 3 L13: 1.3584 L23: 1.9311 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: 0.1917 S13: -0.2233 REMARK 3 S21: -0.1829 S22: 0.0692 S23: -0.0575 REMARK 3 S31: 0.3280 S32: -0.2159 S33: -0.0613 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.4821 -29.1306 -10.8732 REMARK 3 T TENSOR REMARK 3 T11: 0.9361 T22: 1.0718 REMARK 3 T33: 0.9039 T12: -0.3123 REMARK 3 T13: 0.1473 T23: 0.1450 REMARK 3 L TENSOR REMARK 3 L11: 0.5192 L22: 0.5114 REMARK 3 L33: 1.7014 L12: -0.0089 REMARK 3 L13: 0.8125 L23: 0.3190 REMARK 3 S TENSOR REMARK 3 S11: 0.2178 S12: -1.7716 S13: 0.0907 REMARK 3 S21: 1.7449 S22: -0.3542 S23: -0.4252 REMARK 3 S31: -0.0644 S32: -0.3468 S33: 0.1623 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1848 -18.5070 -7.2732 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.1571 REMARK 3 T33: 0.1397 T12: -0.0115 REMARK 3 T13: -0.0332 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.0785 L22: 4.3271 REMARK 3 L33: 1.0918 L12: -1.3584 REMARK 3 L13: -0.1310 L23: 0.7006 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: 0.0360 S13: -0.0735 REMARK 3 S21: 0.1471 S22: -0.0184 S23: -0.1669 REMARK 3 S31: 0.0284 S32: 0.0830 S33: 0.0436 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MRC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256619. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35015 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.448 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.630 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.12 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KCX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 25% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.18000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.34500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.44500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.34500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.18000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 17.44500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 137 REMARK 465 GLU B 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 28 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 113 O HOH B 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 63 74.16 -118.21 REMARK 500 ALA B 26 84.35 56.40 REMARK 500 ALA B 27 143.63 68.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZMS B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 204 DBREF 7MRC A 29 137 UNP Q58F21 BRDT_HUMAN 29 137 DBREF 7MRC B 29 137 UNP Q58F21 BRDT_HUMAN 29 137 SEQADV 7MRC GLY A 25 UNP Q58F21 EXPRESSION TAG SEQADV 7MRC ALA A 26 UNP Q58F21 EXPRESSION TAG SEQADV 7MRC ALA A 27 UNP Q58F21 EXPRESSION TAG SEQADV 7MRC SER A 28 UNP Q58F21 EXPRESSION TAG SEQADV 7MRC GLY B 25 UNP Q58F21 EXPRESSION TAG SEQADV 7MRC ALA B 26 UNP Q58F21 EXPRESSION TAG SEQADV 7MRC ALA B 27 UNP Q58F21 EXPRESSION TAG SEQADV 7MRC SER B 28 UNP Q58F21 EXPRESSION TAG SEQRES 1 A 113 GLY ALA ALA SER THR ASN GLN LEU GLN TYR LEU GLN LYS SEQRES 2 A 113 VAL VAL LEU LYS ASP LEU TRP LYS HIS SER PHE SER TRP SEQRES 3 A 113 PRO PHE GLN ARG PRO VAL ASP ALA VAL LYS LEU GLN LEU SEQRES 4 A 113 PRO ASP TYR TYR THR ILE ILE LYS ASN PRO MET ASP LEU SEQRES 5 A 113 ASN THR ILE LYS LYS ARG LEU GLU ASN LYS TYR TYR ALA SEQRES 6 A 113 LYS ALA SER GLU CYS ILE GLU ASP PHE ASN THR MET PHE SEQRES 7 A 113 SER ASN CYS TYR LEU TYR ASN LYS PRO GLY ASP ASP ILE SEQRES 8 A 113 VAL LEU MET ALA GLN ALA LEU GLU LYS LEU PHE MET GLN SEQRES 9 A 113 LYS LEU SER GLN MET PRO GLN GLU GLU SEQRES 1 B 113 GLY ALA ALA SER THR ASN GLN LEU GLN TYR LEU GLN LYS SEQRES 2 B 113 VAL VAL LEU LYS ASP LEU TRP LYS HIS SER PHE SER TRP SEQRES 3 B 113 PRO PHE GLN ARG PRO VAL ASP ALA VAL LYS LEU GLN LEU SEQRES 4 B 113 PRO ASP TYR TYR THR ILE ILE LYS ASN PRO MET ASP LEU SEQRES 5 B 113 ASN THR ILE LYS LYS ARG LEU GLU ASN LYS TYR TYR ALA SEQRES 6 B 113 LYS ALA SER GLU CYS ILE GLU ASP PHE ASN THR MET PHE SEQRES 7 B 113 SER ASN CYS TYR LEU TYR ASN LYS PRO GLY ASP ASP ILE SEQRES 8 B 113 VAL LEU MET ALA GLN ALA LEU GLU LYS LEU PHE MET GLN SEQRES 9 B 113 LYS LEU SER GLN MET PRO GLN GLU GLU HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET ZMS B 201 93 HET EDO B 202 4 HET EDO B 203 4 HET DMS B 204 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZMS N,N'-{OXYBIS[(ETHANE-2,1-DIYL)OXY(1-OXOETHANE-2,1- HETNAM 2 ZMS DIYL)PIPERIDINE-1,4-DIYL]}BIS{4-[(4-{4-CHLORO-3-[(2- HETNAM 3 ZMS METHYLPROPANE-2-SULFONYL)AMINO]ANILINO}-5- HETNAM 4 ZMS METHYLPYRIMIDIN-2-YL)AMINO]-2-FLUOROBENZAMIDE} HETNAM DMS DIMETHYL SULFOXIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 6 ZMS C62 H76 CL2 F2 N14 O11 S2 FORMUL 9 DMS C2 H6 O S FORMUL 10 HOH *156(H2 O) HELIX 1 AA1 ALA A 27 VAL A 38 1 12 HELIX 2 AA2 VAL A 38 HIS A 46 1 9 HELIX 3 AA3 SER A 47 GLN A 53 5 7 HELIX 4 AA4 ASP A 65 ILE A 70 1 6 HELIX 5 AA5 ASP A 75 ASN A 85 1 11 HELIX 6 AA6 LYS A 90 ASN A 109 1 20 HELIX 7 AA7 ASP A 113 GLN A 132 1 20 HELIX 8 AA8 THR B 29 VAL B 38 1 10 HELIX 9 AA9 VAL B 38 HIS B 46 1 9 HELIX 10 AB1 SER B 49 GLN B 53 5 5 HELIX 11 AB2 ASP B 57 GLN B 62 1 6 HELIX 12 AB3 ASP B 65 ILE B 70 1 6 HELIX 13 AB4 ASP B 75 ASN B 85 1 11 HELIX 14 AB5 LYS B 90 ASN B 109 1 20 HELIX 15 AB6 ASP B 113 GLN B 132 1 20 CISPEP 1 ALA B 27 SER B 28 0 -0.95 CISPEP 2 SER B 28 THR B 29 0 -1.17 SITE 1 AC1 4 TRP A 50 MET A 118 HOH A 350 ZMS B 201 SITE 1 AC2 8 ILE A 69 ILE A 70 LYS A 71 ASN A 72 SITE 2 AC2 8 ASN A 99 ASN A 104 MET A 127 LEU A 130 SITE 1 AC3 6 ASP A 42 VAL A 59 LEU A 125 LYS A 129 SITE 2 AC3 6 HOH A 304 HOH A 354 SITE 1 AC4 28 TRP A 50 PRO A 51 LYS A 60 LEU A 61 SITE 2 AC4 28 GLN A 62 ASN A 109 ASP A 114 ILE A 115 SITE 3 AC4 28 EDO A 201 HOH A 356 TRP B 50 PRO B 51 SITE 4 AC4 28 VAL B 56 VAL B 59 LYS B 60 LEU B 61 SITE 5 AC4 28 GLN B 62 LEU B 63 ASN B 109 ASP B 114 SITE 6 AC4 28 ILE B 115 LYS B 124 HOH B 312 HOH B 332 SITE 7 AC4 28 HOH B 344 HOH B 351 HOH B 352 HOH B 360 SITE 1 AC5 5 PRO B 55 GLN B 128 GLN B 132 HOH B 309 SITE 2 AC5 5 HOH B 359 SITE 1 AC6 6 ALA B 58 LEU B 63 PRO B 64 ASP B 65 SITE 2 AC6 6 HOH B 335 HOH B 364 SITE 1 AC7 3 LEU B 40 TRP B 44 LYS B 80 CRYST1 62.360 34.890 110.690 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.028662 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009034 0.00000