HEADER SIGNALING PROTEIN/IMMUNE SYSTEM 10-MAY-21 7MRZ TITLE STRUCTURE OF GDF11 BOUND TO FUSED ACTRIIB-ECD AND ALK4-ECD WITH ANTI- TITLE 2 ACTRIIB FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 11; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GDF-11,BONE MORPHOGENETIC PROTEIN 11,BMP-11; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ACTIVIN RECEPTOR TYPE-2B,ACTIVIN RECEPTOR TYPE-1B; COMPND 8 CHAIN: C; COMPND 9 FRAGMENT: EXTRACELLULAR DOMAINS OF BOTH PROTEINS IN THE FUSED COMPND 10 CONSTRUCT; COMPND 11 SYNONYM: ACTR-IIB FUSED TO ACTIVIN RECEPTOR-LIKE KINASE 4; COMPND 12 EC: 2.7.11.30; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: FAB HEAVY CHAIN; COMPND 16 CHAIN: X; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: FAB LIGHT CHAIN; COMPND 20 CHAIN: Y; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDF11, BMP11; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ACVR2B, ACVR1B, ACVRLK4, ALK4; SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS GROWTH FACTOR, TYPE I RECEPTOR, TRANSFORMING GROWTH FACTOR BETA, TYPE KEYWDS 2 II RECEPTOR, TERNARY COMPLEX, GDF11, SIGNALING PROTEIN, SIGNALING KEYWDS 3 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.J.GOEBEL,C.KATTAMURI,G.R.GIPSON,T.B.THOMPSON REVDAT 2 18-OCT-23 7MRZ 1 REMARK REVDAT 1 19-JAN-22 7MRZ 0 JRNL AUTH E.J.GOEBEL,C.KATTAMURI,G.R.GIPSON,L.KRISHNAN,M.CHAVEZ, JRNL AUTH 2 M.CZEPNIK,M.C.MAGUIRE,R.GRENHA,M.HAKANSSON,D.T.LOGAN, JRNL AUTH 3 A.V.GRINBERG,D.SAKO,R.CASTONGUAY,R.KUMAR,T.B.THOMPSON JRNL TITL STRUCTURES OF ACTIVIN LIGAND TRAPS USING NATURAL SETS OF JRNL TITL 2 TYPE I AND TYPE II TGF BETA RECEPTORS. JRNL REF ISCIENCE V. 25 03590 2022 JRNL REFN ESSN 2589-0042 JRNL PMID 35005539 JRNL DOI 10.1016/J.ISCI.2021.103590 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 29414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.290 REMARK 3 R VALUE (WORKING SET) : 0.288 REMARK 3 FREE R VALUE : 0.327 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0600 - 6.4600 1.00 3241 156 0.2559 0.2945 REMARK 3 2 6.4600 - 5.1300 1.00 2914 155 0.2790 0.3347 REMARK 3 3 5.1300 - 4.4800 1.00 2908 120 0.2725 0.2456 REMARK 3 4 4.4800 - 4.0700 1.00 2804 139 0.2802 0.3255 REMARK 3 5 4.0700 - 3.7800 0.99 2742 157 0.3127 0.3691 REMARK 3 6 3.7800 - 3.5600 0.99 2766 140 0.3306 0.4083 REMARK 3 7 3.5600 - 3.3800 0.99 2724 136 0.3361 0.3562 REMARK 3 8 3.3800 - 3.2300 0.97 2629 157 0.3206 0.3660 REMARK 3 9 3.2300 - 3.1100 0.96 2575 129 0.3223 0.3807 REMARK 3 10 3.1100 - 3.0000 0.96 2702 120 0.3569 0.3513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.552 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.443 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5717 REMARK 3 ANGLE : 0.631 7770 REMARK 3 CHIRALITY : 0.043 854 REMARK 3 PLANARITY : 0.004 1003 REMARK 3 DIHEDRAL : 17.545 2071 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -3.1349 -13.2630 -39.7389 REMARK 3 T TENSOR REMARK 3 T11: 0.7908 T22: 0.5047 REMARK 3 T33: 0.9344 T12: -0.1910 REMARK 3 T13: 0.0570 T23: -0.2489 REMARK 3 L TENSOR REMARK 3 L11: 0.3448 L22: 0.3747 REMARK 3 L33: 2.1081 L12: -0.2770 REMARK 3 L13: 0.5683 L23: -0.8680 REMARK 3 S TENSOR REMARK 3 S11: -0.0339 S12: 0.0767 S13: -0.0532 REMARK 3 S21: -0.2855 S22: 0.1109 S23: -0.0675 REMARK 3 S31: 0.1998 S32: -0.0726 S33: -0.0977 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MRZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000255520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033202 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29791 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.18100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.31500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6MAC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 0.9M AMMONIUM SULFATE, 0.9 REMARK 280 M KCL, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 330.12667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 660.25333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 495.19000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 825.31667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 165.06333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 330.12667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 660.25333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 825.31667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 495.19000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 165.06333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -153.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, X, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -165.06333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 299 REMARK 465 SER C 19 REMARK 465 GLY C 20 REMARK 465 ARG C 21 REMARK 465 GLY C 22 REMARK 465 GLU C 23 REMARK 465 ALA C 24 REMARK 465 GLY C 121 REMARK 465 PRO C 122 REMARK 465 GLU C 123 REMARK 465 VAL C 124 REMARK 465 THR C 125 REMARK 465 TYR C 126 REMARK 465 GLU C 127 REMARK 465 PRO C 128 REMARK 465 PRO C 129 REMARK 465 PRO C 130 REMARK 465 THR C 131 REMARK 465 ALA C 132 REMARK 465 PRO C 133 REMARK 465 THR C 134 REMARK 465 GLY C 1007 REMARK 465 GLY C 1008 REMARK 465 GLY C 1009 REMARK 465 THR C 1010 REMARK 465 HIS C 1011 REMARK 465 THR C 1012 REMARK 465 CYS C 1013 REMARK 465 PRO C 1014 REMARK 465 PRO C 1015 REMARK 465 CYS C 1016 REMARK 465 PRO C 1017 REMARK 465 ALA C 1018 REMARK 465 PRO C 1019 REMARK 465 GLU C 1020 REMARK 465 LEU C 1021 REMARK 465 LEU C 1022 REMARK 465 GLY C 1023 REMARK 465 SER C 1024 REMARK 465 GLY C 1025 REMARK 465 PRO C 1026 REMARK 465 ARG C 1027 REMARK 465 GLY C 1028 REMARK 465 VAL C 1029 REMARK 465 GLN C 1030 REMARK 465 LEU C 1106 REMARK 465 ARG C 1107 REMARK 465 VAL C 1108 REMARK 465 PRO C 1109 REMARK 465 SER C 1110 REMARK 465 GLY C 1111 REMARK 465 HIS C 1112 REMARK 465 LEU C 1113 REMARK 465 LYS C 1114 REMARK 465 GLU C 1115 REMARK 465 PRO C 1116 REMARK 465 GLU C 1117 REMARK 465 HIS C 1118 REMARK 465 PRO C 1119 REMARK 465 SER C 1120 REMARK 465 MET C 1121 REMARK 465 TRP C 1122 REMARK 465 GLY C 1123 REMARK 465 PRO C 1124 REMARK 465 VAL C 1125 REMARK 465 GLU C 1126 REMARK 465 THR C 1127 REMARK 465 GLY C 1128 REMARK 465 GLY C 1129 REMARK 465 GLY C 1130 REMARK 465 THR C 1131 REMARK 465 HIS C 1132 REMARK 465 THR C 1133 REMARK 465 CYS C 1134 REMARK 465 PRO C 1135 REMARK 465 PRO C 1136 REMARK 465 CYS C 1137 REMARK 465 PRO C 1138 REMARK 465 ALA C 1139 REMARK 465 PRO C 1140 REMARK 465 GLU C 1141 REMARK 465 LEU C 1142 REMARK 465 LEU C 1143 REMARK 465 GLY C 1144 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER C 1055 O ASN C 1092 1.57 REMARK 500 O LEU Y 354 HZ3 LYS Y 412 1.60 REMARK 500 O LEU Y 354 NZ LYS Y 412 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 309 -84.79 -116.30 REMARK 500 GLU A 310 158.34 -4.03 REMARK 500 SER A 311 79.27 -106.66 REMARK 500 CYS A 313 107.87 -51.23 REMARK 500 ASN A 339 166.83 71.43 REMARK 500 PRO A 364 78.47 -111.99 REMARK 500 ASN A 386 -164.48 -104.62 REMARK 500 ARG C 40 71.87 57.85 REMARK 500 LYS C 55 -165.35 -128.02 REMARK 500 ASN C 65 -72.69 -76.29 REMARK 500 VAL C 73 -74.19 -121.65 REMARK 500 GLU C1047 71.36 -167.71 REMARK 500 ILE C1056 -173.11 -175.70 REMARK 500 MET C1062 -90.13 -96.47 REMARK 500 PRO C1071 -179.34 -67.98 REMARK 500 LEU C1090 -93.89 -140.32 REMARK 500 TYR C1100 42.30 71.06 REMARK 500 ASN C1102 78.00 -104.89 REMARK 500 ARG C1103 -70.23 -121.71 REMARK 500 SER X 33 158.68 141.91 REMARK 500 PRO X 42 170.61 -51.49 REMARK 500 LYS X 45 -161.35 -104.83 REMARK 500 GLN X 79 -169.92 -114.67 REMARK 500 PHE X 80 110.60 179.74 REMARK 500 SER X 86 74.24 27.58 REMARK 500 MET X 106 103.56 -59.26 REMARK 500 SER X 119 50.29 -90.55 REMARK 500 SER X 133 105.93 -53.46 REMARK 500 ASP X 150 60.04 68.08 REMARK 500 GLU X 154 150.47 -48.00 REMARK 500 THR X 197 -61.25 -138.80 REMARK 500 ILE Y 224 69.78 60.18 REMARK 500 ALA Y 279 -53.54 69.74 REMARK 500 PRO Y 287 177.22 -59.93 REMARK 500 SER Y 305 66.84 66.92 REMARK 500 ALA Y 312 -172.11 -179.63 REMARK 500 ALA Y 320 172.93 -58.91 REMARK 500 ASN Y 367 73.11 56.07 REMARK 500 SER Y 400 31.98 70.07 REMARK 500 GLU Y 442 57.36 -146.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 7MRZ A 299 407 UNP O95390 GDF11_HUMAN 299 407 DBREF 7MRZ C 19 134 UNP Q13705 AVR2B_HUMAN 19 134 DBREF 7MRZ C 1024 1126 UNP P36896 ACV1B_HUMAN 24 126 DBREF 7MRZ X 1 222 PDB 7MRZ 7MRZ 1 222 DBREF 7MRZ Y 223 443 PDB 7MRZ 7MRZ 223 443 SEQADV 7MRZ GLY C 1007 UNP Q13705 LINKER SEQADV 7MRZ GLY C 1008 UNP Q13705 LINKER SEQADV 7MRZ GLY C 1009 UNP Q13705 LINKER SEQADV 7MRZ THR C 1010 UNP Q13705 LINKER SEQADV 7MRZ HIS C 1011 UNP Q13705 LINKER SEQADV 7MRZ THR C 1012 UNP Q13705 LINKER SEQADV 7MRZ CYS C 1013 UNP Q13705 LINKER SEQADV 7MRZ PRO C 1014 UNP Q13705 LINKER SEQADV 7MRZ PRO C 1015 UNP Q13705 LINKER SEQADV 7MRZ CYS C 1016 UNP Q13705 LINKER SEQADV 7MRZ PRO C 1017 UNP Q13705 LINKER SEQADV 7MRZ ALA C 1018 UNP Q13705 LINKER SEQADV 7MRZ PRO C 1019 UNP Q13705 LINKER SEQADV 7MRZ GLU C 1020 UNP Q13705 LINKER SEQADV 7MRZ LEU C 1021 UNP Q13705 LINKER SEQADV 7MRZ LEU C 1022 UNP Q13705 LINKER SEQADV 7MRZ GLY C 1023 UNP Q13705 LINKER SEQADV 7MRZ ALA C 1067 UNP P36896 ARG 67 CONFLICT SEQADV 7MRZ THR C 1127 UNP P36896 EXPRESSION TAG SEQADV 7MRZ GLY C 1128 UNP P36896 EXPRESSION TAG SEQADV 7MRZ GLY C 1129 UNP P36896 EXPRESSION TAG SEQADV 7MRZ GLY C 1130 UNP P36896 EXPRESSION TAG SEQADV 7MRZ THR C 1131 UNP P36896 EXPRESSION TAG SEQADV 7MRZ HIS C 1132 UNP P36896 EXPRESSION TAG SEQADV 7MRZ THR C 1133 UNP P36896 EXPRESSION TAG SEQADV 7MRZ CYS C 1134 UNP P36896 EXPRESSION TAG SEQADV 7MRZ PRO C 1135 UNP P36896 EXPRESSION TAG SEQADV 7MRZ PRO C 1136 UNP P36896 EXPRESSION TAG SEQADV 7MRZ CYS C 1137 UNP P36896 EXPRESSION TAG SEQADV 7MRZ PRO C 1138 UNP P36896 EXPRESSION TAG SEQADV 7MRZ ALA C 1139 UNP P36896 EXPRESSION TAG SEQADV 7MRZ PRO C 1140 UNP P36896 EXPRESSION TAG SEQADV 7MRZ GLU C 1141 UNP P36896 EXPRESSION TAG SEQADV 7MRZ LEU C 1142 UNP P36896 EXPRESSION TAG SEQADV 7MRZ LEU C 1143 UNP P36896 EXPRESSION TAG SEQADV 7MRZ GLY C 1144 UNP P36896 EXPRESSION TAG SEQRES 1 A 109 ASN LEU GLY LEU ASP CYS ASP GLU HIS SER SER GLU SER SEQRES 2 A 109 ARG CYS CYS ARG TYR PRO LEU THR VAL ASP PHE GLU ALA SEQRES 3 A 109 PHE GLY TRP ASP TRP ILE ILE ALA PRO LYS ARG TYR LYS SEQRES 4 A 109 ALA ASN TYR CYS SER GLY GLN CYS GLU TYR MET PHE MET SEQRES 5 A 109 GLN LYS TYR PRO HIS THR HIS LEU VAL GLN GLN ALA ASN SEQRES 6 A 109 PRO ARG GLY SER ALA GLY PRO CYS CYS THR PRO THR LYS SEQRES 7 A 109 MET SER PRO ILE ASN MET LEU TYR PHE ASN ASP LYS GLN SEQRES 8 A 109 GLN ILE ILE TYR GLY LYS ILE PRO GLY MET VAL VAL ASP SEQRES 9 A 109 ARG CYS GLY CYS SER SEQRES 1 C 254 SER GLY ARG GLY GLU ALA GLU THR ARG GLU CYS ILE TYR SEQRES 2 C 254 TYR ASN ALA ASN TRP GLU LEU GLU ARG THR ASN GLN SER SEQRES 3 C 254 GLY LEU GLU ARG CYS GLU GLY GLU GLN ASP LYS ARG LEU SEQRES 4 C 254 HIS CYS TYR ALA SER TRP ARG ASN SER SER GLY THR ILE SEQRES 5 C 254 GLU LEU VAL LYS LYS GLY CYS TRP LEU ASP ASP PHE ASN SEQRES 6 C 254 CYS TYR ASP ARG GLN GLU CYS VAL ALA THR GLU GLU ASN SEQRES 7 C 254 PRO GLN VAL TYR PHE CYS CYS CYS GLU GLY ASN PHE CYS SEQRES 8 C 254 ASN GLU ARG PHE THR HIS LEU PRO GLU ALA GLY GLY PRO SEQRES 9 C 254 GLU VAL THR TYR GLU PRO PRO PRO THR ALA PRO THR GLY SEQRES 10 C 254 GLY GLY THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU SEQRES 11 C 254 LEU LEU GLY SER GLY PRO ARG GLY VAL GLN ALA LEU LEU SEQRES 12 C 254 CYS ALA CYS THR SER CYS LEU GLN ALA ASN TYR THR CYS SEQRES 13 C 254 GLU THR ASP GLY ALA CYS MET VAL SER ILE PHE ASN LEU SEQRES 14 C 254 ASP GLY MET GLU HIS HIS VAL ALA THR CYS ILE PRO LYS SEQRES 15 C 254 VAL GLU LEU VAL PRO ALA GLY LYS PRO PHE TYR CYS LEU SEQRES 16 C 254 SER SER GLU ASP LEU ARG ASN THR HIS CYS CYS TYR THR SEQRES 17 C 254 ASP TYR CYS ASN ARG ILE ASP LEU ARG VAL PRO SER GLY SEQRES 18 C 254 HIS LEU LYS GLU PRO GLU HIS PRO SER MET TRP GLY PRO SEQRES 19 C 254 VAL GLU THR GLY GLY GLY THR HIS THR CYS PRO PRO CYS SEQRES 20 C 254 PRO ALA PRO GLU LEU LEU GLY SEQRES 1 X 222 GLN LEU GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 X 222 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 X 222 GLY SER ILE SER SER SER SER TYR TYR TRP GLY TRP ILE SEQRES 4 X 222 ARG GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY SER SEQRES 5 X 222 ILE SER TYR SER GLY SER THR TYR TYR ASN PRO SER LEU SEQRES 6 X 222 LYS SER ARG VAL THR ILE SER VAL ASP THR SER LYS ASN SEQRES 7 X 222 GLN PHE SER LEU LYS LEU SER SER VAL THR ALA ALA ASP SEQRES 8 X 222 THR ALA VAL TYR TYR CYS ALA ARG ASP SER LEU ARG TYR SEQRES 9 X 222 GLY MET ASP VAL TRP GLY GLN GLY THR THR VAL THR VAL SEQRES 10 X 222 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 X 222 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 X 222 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 X 222 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 X 222 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 X 222 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 X 222 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 X 222 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 18 X 222 CYS SEQRES 1 Y 221 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 Y 221 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 Y 221 GLN SER VAL LEU TYR SER SER ASN ASN LYS ASN TYR LEU SEQRES 4 Y 221 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU SEQRES 5 Y 221 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 Y 221 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 Y 221 LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA VAL SEQRES 8 Y 221 TYR TYR CYS GLN GLN TYR ALA LEU ALA PRO PRO ARG THR SEQRES 9 Y 221 PHE GLY GLY GLY THR LYS VAL GLU ILE LYS ARG THR VAL SEQRES 10 Y 221 ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU SEQRES 11 Y 221 GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU SEQRES 12 Y 221 ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS SEQRES 13 Y 221 VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER SEQRES 14 Y 221 VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SEQRES 15 Y 221 SER SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS SEQRES 16 Y 221 HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SEQRES 17 Y 221 SER SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET NAG C 301 27 HET SO4 X 301 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG C8 H15 N O6 FORMUL 6 SO4 O4 S 2- HELIX 1 AA1 PHE A 322 GLY A 326 1 5 HELIX 2 AA2 TYR A 353 ASN A 363 1 11 HELIX 3 AA3 CYS C 1039 ASN C 1043 5 5 HELIX 4 AA4 PRO C 1081 LEU C 1085 5 5 HELIX 5 AA5 THR X 88 THR X 92 5 5 HELIX 6 AA6 SER X 193 LEU X 195 5 3 HELIX 7 AA7 LYS X 207 ASN X 210 5 4 HELIX 8 AA8 GLN Y 307 VAL Y 311 5 5 HELIX 9 AA9 GLU Y 352 SER Y 356 5 5 HELIX 10 AB1 SER Y 411 LYS Y 417 1 7 SHEET 1 AA1 2 CYS A 314 TYR A 316 0 SHEET 2 AA1 2 TYR A 340 SER A 342 -1 O TYR A 340 N TYR A 316 SHEET 1 AA2 2 THR A 319 ASP A 321 0 SHEET 2 AA2 2 ARG A 335 LYS A 337 -1 O TYR A 336 N VAL A 320 SHEET 1 AA3 3 ILE A 330 ALA A 332 0 SHEET 2 AA3 3 CYS A 372 PHE A 385 -1 O LEU A 383 N ILE A 331 SHEET 3 AA3 3 ILE A 391 CYS A 406 -1 O ILE A 396 N ILE A 380 SHEET 1 AA4 5 SER C 44 GLU C 50 0 SHEET 2 AA4 5 THR C 26 ASN C 33 -1 N ARG C 27 O CYS C 49 SHEET 3 AA4 5 GLU C 71 TRP C 78 -1 O LYS C 75 N TYR C 32 SHEET 4 AA4 5 HIS C 58 ARG C 64 -1 N ARG C 64 O GLU C 71 SHEET 5 AA4 5 TYR C 100 CYS C 104 -1 O CYS C 102 N ALA C 61 SHEET 1 AA5 2 VAL C 91 ALA C 92 0 SHEET 2 AA5 2 THR C 114 HIS C 115 1 O THR C 114 N ALA C 92 SHEET 1 AA6 3 VAL C1066 ILE C1070 0 SHEET 2 AA6 3 ALA C1051 SER C1055 -1 N ALA C1051 O ILE C1070 SHEET 3 AA6 3 HIS C1094 CYS C1096 -1 O CYS C1096 N CYS C1052 SHEET 1 AA7 2 GLN X 3 LEU X 4 0 SHEET 2 AA7 2 VAL X 24 SER X 25 -1 O SER X 25 N GLN X 3 SHEET 1 AA8 6 LEU X 11 VAL X 12 0 SHEET 2 AA8 6 THR X 113 VAL X 117 1 O THR X 116 N VAL X 12 SHEET 3 AA8 6 ALA X 93 ALA X 98 -1 N ALA X 93 O VAL X 115 SHEET 4 AA8 6 TYR X 35 GLN X 41 -1 N GLY X 37 O ALA X 98 SHEET 5 AA8 6 GLU X 48 SER X 54 -1 O GLY X 51 N TRP X 38 SHEET 6 AA8 6 THR X 59 TYR X 61 -1 O TYR X 60 N SER X 52 SHEET 1 AA9 3 LEU X 18 THR X 21 0 SHEET 2 AA9 3 GLN X 79 LEU X 84 -1 O LEU X 82 N LEU X 20 SHEET 3 AA9 3 VAL X 69 ASP X 74 -1 N ASP X 74 O GLN X 79 SHEET 1 AB1 4 SER X 126 LEU X 130 0 SHEET 2 AB1 4 THR X 141 TYR X 151 -1 O LEU X 147 N PHE X 128 SHEET 3 AB1 4 TYR X 182 PRO X 191 -1 O TYR X 182 N TYR X 151 SHEET 4 AB1 4 VAL X 169 THR X 171 -1 N HIS X 170 O VAL X 187 SHEET 1 AB2 4 SER X 126 LEU X 130 0 SHEET 2 AB2 4 THR X 141 TYR X 151 -1 O LEU X 147 N PHE X 128 SHEET 3 AB2 4 TYR X 182 PRO X 191 -1 O TYR X 182 N TYR X 151 SHEET 4 AB2 4 VAL X 175 LEU X 176 -1 N VAL X 175 O SER X 183 SHEET 1 AB3 3 THR X 157 TRP X 160 0 SHEET 2 AB3 3 TYR X 200 HIS X 206 -1 O ASN X 203 N SER X 159 SHEET 3 AB3 3 THR X 211 VAL X 217 -1 O LYS X 215 N CYS X 202 SHEET 1 AB4 4 MET Y 226 SER Y 229 0 SHEET 2 AB4 4 ALA Y 241 SER Y 247 -1 O LYS Y 246 N THR Y 227 SHEET 3 AB4 4 ASP Y 298 ILE Y 303 -1 O PHE Y 299 N CYS Y 245 SHEET 4 AB4 4 PHE Y 290 SER Y 295 -1 N SER Y 295 O ASP Y 298 SHEET 1 AB5 6 SER Y 232 SER Y 236 0 SHEET 2 AB5 6 THR Y 331 LYS Y 336 1 O GLU Y 334 N LEU Y 233 SHEET 3 AB5 6 ALA Y 312 GLN Y 318 -1 N ALA Y 312 O VAL Y 333 SHEET 4 AB5 6 LEU Y 261 GLN Y 266 -1 N ALA Y 262 O GLN Y 317 SHEET 5 AB5 6 LYS Y 273 TYR Y 277 -1 O LYS Y 273 N GLN Y 265 SHEET 6 AB5 6 THR Y 281 ARG Y 282 -1 O THR Y 281 N TYR Y 277 SHEET 1 AB6 2 LEU Y 252 TYR Y 253 0 SHEET 2 AB6 2 LYS Y 258 ASN Y 259 -1 O LYS Y 258 N TYR Y 253 SHEET 1 AB7 4 SER Y 343 PHE Y 347 0 SHEET 2 AB7 4 ALA Y 359 PHE Y 368 -1 O VAL Y 362 N PHE Y 347 SHEET 3 AB7 4 TYR Y 402 LEU Y 410 -1 O LEU Y 404 N LEU Y 365 SHEET 4 AB7 4 SER Y 388 VAL Y 392 -1 N SER Y 391 O SER Y 405 SHEET 1 AB8 3 ALA Y 373 VAL Y 379 0 SHEET 2 AB8 3 VAL Y 420 HIS Y 427 -1 O GLU Y 424 N GLN Y 376 SHEET 3 AB8 3 VAL Y 434 ASN Y 439 -1 O LYS Y 436 N CYS Y 423 SSBOND 1 CYS A 304 CYS A 314 1555 1555 2.03 SSBOND 2 CYS A 313 CYS A 372 1555 1555 2.03 SSBOND 3 CYS A 341 CYS A 404 1555 1555 2.03 SSBOND 4 CYS A 345 CYS A 406 1555 1555 2.03 SSBOND 5 CYS C 29 CYS C 59 1555 1555 2.03 SSBOND 6 CYS C 49 CYS C 77 1555 1555 2.04 SSBOND 7 CYS C 84 CYS C 103 1555 1555 2.03 SSBOND 8 CYS C 90 CYS C 102 1555 1555 2.03 SSBOND 9 CYS C 104 CYS C 109 1555 1555 2.02 SSBOND 10 CYS C 1034 CYS C 1052 1555 1555 2.03 SSBOND 11 CYS C 1036 CYS C 1039 1555 1555 2.03 SSBOND 12 CYS C 1046 CYS C 1069 1555 1555 2.03 SSBOND 13 CYS C 1084 CYS C 1095 1555 1555 2.02 SSBOND 14 CYS C 1096 CYS C 1101 1555 1555 2.03 SSBOND 15 CYS X 22 CYS X 97 1555 1555 2.03 SSBOND 16 CYS X 146 CYS X 202 1555 1555 2.04 SSBOND 17 CYS X 222 CYS Y 443 1555 1555 2.03 SSBOND 18 CYS Y 245 CYS Y 316 1555 1555 2.04 SSBOND 19 CYS Y 363 CYS Y 423 1555 1555 2.03 LINK ND2 ASN C 65 C1 NAG C 301 1555 1555 1.45 CISPEP 1 ALA A 332 PRO A 333 0 -2.57 CISPEP 2 VAL C 1076 PRO C 1077 0 -3.89 CISPEP 3 PHE X 152 PRO X 153 0 -5.67 CISPEP 4 GLU X 154 PRO X 155 0 0.72 CISPEP 5 SER Y 229 PRO Y 230 0 -5.09 CISPEP 6 TYR Y 369 PRO Y 370 0 -0.19 CRYST1 68.261 68.261 990.380 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014650 0.008458 0.000000 0.00000 SCALE2 0.000000 0.016916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001010 0.00000