HEADER BIOSYNTHETIC PROTEIN 11-MAY-21 7MSP TITLE SUNS GLYCOSIN S-GLYCOSYLTRANSFERASE CAVEAT 7MSP UPG A 500 HAS WRONG CHIRALITY AT ATOM C1' UPG A 500 HAS CAVEAT 2 7MSP WRONG CHIRALITY AT ATOM C3' UPG A 500 HAS WRONG CHIRALITY CAVEAT 3 7MSP AT ATOM C4' UPG B 502 HAS WRONG CHIRALITY AT ATOM C1' UPG B CAVEAT 4 7MSP 502 HAS WRONG CHIRALITY AT ATOM C2' UPG B 502 HAS WRONG CAVEAT 5 7MSP CHIRALITY AT ATOM C3' COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPBETA PROPHAGE-DERIVED GLYCOSYLTRANSFERASE SUNS; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: SUNS, YOLJ, BSU21450; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIN, RIPP, S-GLYCOSYLTRANSFERASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.GARG,S.K.NAIR REVDAT 2 22-MAY-24 7MSP 1 REMARK REVDAT 1 13-APR-22 7MSP 0 JRNL AUTH D.FUJINAMI,C.V.GARCIA DE GONZALO,S.BISWAS,Y.HAO,H.WANG, JRNL AUTH 2 N.GARG,T.LUKK,S.K.NAIR,W.A.VAN DER DONK JRNL TITL STRUCTURAL AND MECHANISTIC INVESTIGATIONS OF PROTEIN JRNL TITL 2 S-GLYCOSYLTRANSFERASES. JRNL REF CELL CHEM BIOL V. 28 1740 2021 JRNL REFN ESSN 2451-9456 JRNL PMID 34283964 JRNL DOI 10.1016/J.CHEMBIOL.2021.06.009 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8900 - 5.3900 1.00 2902 151 0.1780 0.2417 REMARK 3 2 5.3900 - 4.2800 1.00 2784 147 0.1708 0.1955 REMARK 3 3 4.2800 - 3.7400 1.00 2756 145 0.1784 0.2415 REMARK 3 4 3.7400 - 3.4000 1.00 2710 143 0.2142 0.2801 REMARK 3 5 3.4000 - 3.1600 1.00 2727 143 0.2240 0.2630 REMARK 3 6 3.1600 - 2.9700 1.00 2717 143 0.2349 0.3022 REMARK 3 7 2.9700 - 2.8200 1.00 2684 141 0.2268 0.2716 REMARK 3 8 2.8200 - 2.7000 1.00 2693 142 0.2227 0.2708 REMARK 3 9 2.7000 - 2.6000 1.00 2694 142 0.2142 0.2438 REMARK 3 10 2.6000 - 2.5100 1.00 2687 141 0.2185 0.2843 REMARK 3 11 2.5100 - 2.4300 1.00 2642 140 0.2208 0.2708 REMARK 3 12 2.4300 - 2.3600 1.00 2687 141 0.2210 0.2847 REMARK 3 13 2.3600 - 2.3000 1.00 2696 142 0.2384 0.2599 REMARK 3 14 2.3000 - 2.2400 1.00 2701 142 0.2369 0.3070 REMARK 3 15 2.2400 - 2.1900 1.00 2619 138 0.2315 0.2673 REMARK 3 16 2.1900 - 2.1400 1.00 2683 141 0.2594 0.2917 REMARK 3 17 2.1400 - 2.1000 1.00 2645 140 0.2862 0.3284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48463 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000 50 MM HEPES PH=7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.42500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.96000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.42500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.96000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 MET B 1 REMARK 465 LEU B 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 335 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 74 O HOH B 601 1.86 REMARK 500 OD1 ASN B 238 O HOH B 602 1.91 REMARK 500 O HOH B 736 O HOH B 742 1.97 REMARK 500 N PHE A 80 O HOH A 601 1.98 REMARK 500 O HOH B 700 O HOH B 705 2.04 REMARK 500 OE2 GLU A 33 O HOH A 602 2.06 REMARK 500 O HOH B 727 O HOH B 741 2.06 REMARK 500 OG SER A 21 O HOH A 603 2.06 REMARK 500 O VAL B 325 O HOH B 603 2.07 REMARK 500 OH TYR A 307 NZ LYS B 71 2.07 REMARK 500 O VAL A 325 O HOH A 604 2.08 REMARK 500 O HOH B 731 O HOH B 737 2.08 REMARK 500 O HOH B 729 O HOH B 736 2.10 REMARK 500 O HOH B 686 O HOH B 726 2.10 REMARK 500 NE ARG B 259 O HOH B 604 2.12 REMARK 500 OG1 THR B 173 O HOH B 605 2.13 REMARK 500 OE1 GLU A 247 O HOH A 605 2.14 REMARK 500 OD2 ASP B 115 O HOH B 606 2.14 REMARK 500 O LEU A 335 NZ LYS B 143 2.16 REMARK 500 O ARG A 245 O HOH A 606 2.16 REMARK 500 O LYS B 113 O HOH B 607 2.18 REMARK 500 OG1 THR B 173 O HOH B 608 2.18 REMARK 500 O TYR A 109 O HOH A 607 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 130 O HOH B 602 2455 2.01 REMARK 500 O HOH A 616 O HOH B 652 2455 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 269 CD GLU A 269 OE1 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 234 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU B 9 OE1 - CD - OE2 ANGL. DEV. = -17.9 DEGREES REMARK 500 GLU B 9 CG - CD - OE1 ANGL. DEV. = 18.5 DEGREES REMARK 500 GLU B 9 CG - CD - OE2 ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -76.57 -63.89 REMARK 500 TYR A 14 103.91 46.79 REMARK 500 ALA A 15 40.81 -105.62 REMARK 500 ASN A 28 47.12 -96.47 REMARK 500 ASP A 37 91.47 -62.19 REMARK 500 MET A 39 -57.19 -123.03 REMARK 500 SER A 40 116.88 179.86 REMARK 500 SER A 88 41.39 -99.36 REMARK 500 TYR A 89 60.90 61.29 REMARK 500 ASP A 93 36.88 -93.77 REMARK 500 HIS A 205 12.04 83.45 REMARK 500 ASN A 227 40.62 27.60 REMARK 500 LEU A 264 30.72 -95.69 REMARK 500 ALA B 15 0.26 -63.76 REMARK 500 ASP B 79 -1.10 -148.44 REMARK 500 SER B 88 56.69 -93.03 REMARK 500 ASN B 223 -91.54 -102.52 REMARK 500 PRO B 224 -109.59 -36.89 REMARK 500 SER B 225 -144.22 -93.01 REMARK 500 ASN B 228 -40.87 76.09 REMARK 500 ILE B 229 -78.47 -47.65 REMARK 500 LYS B 266 51.43 -112.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 223 PRO B 224 -138.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU B 9 0.12 SIDE CHAIN REMARK 500 ASN B 285 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD1 REMARK 620 2 ASP A 138 OD2 60.4 REMARK 620 3 UPG A 500 O2A 99.0 86.9 REMARK 620 4 UPG A 500 O2B 159.8 99.4 79.1 REMARK 620 5 HOH A 634 O 99.3 157.8 106.4 100.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 138 OD1 REMARK 620 2 ASP B 138 OD2 60.3 REMARK 620 3 UPG B 502 O2A 92.1 87.2 REMARK 620 4 UPG B 502 O2B 168.2 107.8 86.5 REMARK 620 5 HOH B 638 O 88.3 148.1 100.3 103.5 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7MSK RELATED DB: PDB DBREF 7MSP A 1 335 UNP O31986 SUNS_BACSU 1 335 DBREF 7MSP B 1 335 UNP O31986 SUNS_BACSU 1 335 SEQRES 1 A 335 MET LYS LEU SER ASP ILE TYR LEU GLU LEU LYS LYS GLY SEQRES 2 A 335 TYR ALA ASP SER LEU LEU TYR SER ASP LEU SER LEU LEU SEQRES 3 A 335 VAL ASN ILE MET GLU TYR GLU LYS ASP ILE ASP VAL MET SEQRES 4 A 335 SER ILE GLN SER LEU VAL ALA GLY TYR GLU LYS SER ASP SEQRES 5 A 335 THR PRO THR ILE THR CYS GLY ILE ILE VAL TYR ASN GLU SEQRES 6 A 335 SER LYS ARG ILE LYS LYS CYS LEU ASN SER VAL LYS ASP SEQRES 7 A 335 ASP PHE ASN GLU ILE ILE VAL LEU ASP SER TYR SER THR SEQRES 8 A 335 ASP ASP THR VAL ASP ILE ILE LYS CYS ASP PHE PRO ASP SEQRES 9 A 335 VAL GLU ILE LYS TYR GLU LYS TRP LYS ASN ASP PHE SER SEQRES 10 A 335 TYR ALA ARG ASN LYS ILE ILE GLU TYR ALA THR SER GLU SEQRES 11 A 335 TRP ILE TYR PHE ILE ASP ALA ASP ASN LEU TYR SER LYS SEQRES 12 A 335 GLU ASN LYS GLY LYS ILE ALA LYS VAL ALA ARG VAL LEU SEQRES 13 A 335 GLU PHE PHE SER ILE ASP CYS VAL VAL SER PRO TYR ILE SEQRES 14 A 335 GLU GLU TYR THR GLY HIS LEU TYR SER ASP THR ARG ARG SEQRES 15 A 335 MET PHE ARG LEU ASN GLY LYS VAL LYS PHE HIS GLY LYS SEQRES 16 A 335 VAL HIS GLU GLU PRO MET ASN TYR ASN HIS SER LEU PRO SEQRES 17 A 335 PHE ASN PHE ILE VAL ASN LEU LYS VAL TYR HIS ASN GLY SEQRES 18 A 335 TYR ASN PRO SER GLU ASN ASN ILE LYS SER LYS THR ARG SEQRES 19 A 335 ARG ASN ILE ASN LEU THR GLU GLU MET LEU ARG LEU GLU SEQRES 20 A 335 PRO GLU ASN PRO LYS TRP LEU PHE PHE PHE GLY ARG GLU SEQRES 21 A 335 LEU HIS LEU LEU ASP LYS ASP GLU GLU ALA ILE ASP TYR SEQRES 22 A 335 LEU LYS LYS SER ILE ASN ASN TYR LYS LYS PHE ASN ASP SEQRES 23 A 335 GLN ARG HIS PHE ILE ASP ALA LEU VAL LEU LEU CYS THR SEQRES 24 A 335 LEU LEU LEU GLN ARG ASN ASN TYR VAL ASP LEU THR LEU SEQRES 25 A 335 TYR LEU ASP ILE LEU GLU THR GLU TYR PRO ARG CYS VAL SEQRES 26 A 335 ASP VAL ASP TYR PHE ARG SER ALA ILE LEU SEQRES 1 B 335 MET LYS LEU SER ASP ILE TYR LEU GLU LEU LYS LYS GLY SEQRES 2 B 335 TYR ALA ASP SER LEU LEU TYR SER ASP LEU SER LEU LEU SEQRES 3 B 335 VAL ASN ILE MET GLU TYR GLU LYS ASP ILE ASP VAL MET SEQRES 4 B 335 SER ILE GLN SER LEU VAL ALA GLY TYR GLU LYS SER ASP SEQRES 5 B 335 THR PRO THR ILE THR CYS GLY ILE ILE VAL TYR ASN GLU SEQRES 6 B 335 SER LYS ARG ILE LYS LYS CYS LEU ASN SER VAL LYS ASP SEQRES 7 B 335 ASP PHE ASN GLU ILE ILE VAL LEU ASP SER TYR SER THR SEQRES 8 B 335 ASP ASP THR VAL ASP ILE ILE LYS CYS ASP PHE PRO ASP SEQRES 9 B 335 VAL GLU ILE LYS TYR GLU LYS TRP LYS ASN ASP PHE SER SEQRES 10 B 335 TYR ALA ARG ASN LYS ILE ILE GLU TYR ALA THR SER GLU SEQRES 11 B 335 TRP ILE TYR PHE ILE ASP ALA ASP ASN LEU TYR SER LYS SEQRES 12 B 335 GLU ASN LYS GLY LYS ILE ALA LYS VAL ALA ARG VAL LEU SEQRES 13 B 335 GLU PHE PHE SER ILE ASP CYS VAL VAL SER PRO TYR ILE SEQRES 14 B 335 GLU GLU TYR THR GLY HIS LEU TYR SER ASP THR ARG ARG SEQRES 15 B 335 MET PHE ARG LEU ASN GLY LYS VAL LYS PHE HIS GLY LYS SEQRES 16 B 335 VAL HIS GLU GLU PRO MET ASN TYR ASN HIS SER LEU PRO SEQRES 17 B 335 PHE ASN PHE ILE VAL ASN LEU LYS VAL TYR HIS ASN GLY SEQRES 18 B 335 TYR ASN PRO SER GLU ASN ASN ILE LYS SER LYS THR ARG SEQRES 19 B 335 ARG ASN ILE ASN LEU THR GLU GLU MET LEU ARG LEU GLU SEQRES 20 B 335 PRO GLU ASN PRO LYS TRP LEU PHE PHE PHE GLY ARG GLU SEQRES 21 B 335 LEU HIS LEU LEU ASP LYS ASP GLU GLU ALA ILE ASP TYR SEQRES 22 B 335 LEU LYS LYS SER ILE ASN ASN TYR LYS LYS PHE ASN ASP SEQRES 23 B 335 GLN ARG HIS PHE ILE ASP ALA LEU VAL LEU LEU CYS THR SEQRES 24 B 335 LEU LEU LEU GLN ARG ASN ASN TYR VAL ASP LEU THR LEU SEQRES 25 B 335 TYR LEU ASP ILE LEU GLU THR GLU TYR PRO ARG CYS VAL SEQRES 26 B 335 ASP VAL ASP TYR PHE ARG SER ALA ILE LEU HET UPG A 500 36 HET MG A 501 1 HET MG B 501 1 HET UPG B 502 36 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETNAM MG MAGNESIUM ION HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 3 UPG 2(C15 H24 N2 O17 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *295(H2 O) HELIX 1 AA1 LEU A 3 GLY A 13 1 11 HELIX 2 AA2 SER A 17 SER A 24 1 8 HELIX 3 AA3 ASN A 28 TYR A 32 5 5 HELIX 4 AA4 SER A 40 SER A 51 1 12 HELIX 5 AA5 ARG A 68 LYS A 77 1 10 HELIX 6 AA6 ASP A 93 PHE A 102 1 10 HELIX 7 AA7 ASP A 115 ALA A 127 1 13 HELIX 8 AA8 LYS A 143 LYS A 146 5 4 HELIX 9 AA9 GLY A 147 PHE A 159 1 13 HELIX 10 AB1 ASN A 228 GLU A 247 1 20 HELIX 11 AB2 ASN A 250 LEU A 264 1 15 HELIX 12 AB3 LYS A 266 LYS A 282 1 17 HELIX 13 AB4 HIS A 289 ARG A 304 1 16 HELIX 14 AB5 ASN A 306 TYR A 321 1 16 HELIX 15 AB6 ASP A 326 ALA A 333 1 8 HELIX 16 AB7 LEU B 3 LYS B 12 1 10 HELIX 17 AB8 SER B 17 SER B 24 1 8 HELIX 18 AB9 ASN B 28 TYR B 32 5 5 HELIX 19 AC1 SER B 40 SER B 51 1 12 HELIX 20 AC2 ARG B 68 LYS B 77 1 10 HELIX 21 AC3 ASP B 93 PHE B 102 1 10 HELIX 22 AC4 ASP B 115 ALA B 127 1 13 HELIX 23 AC5 LYS B 143 LYS B 146 5 4 HELIX 24 AC6 GLY B 147 PHE B 159 1 13 HELIX 25 AC7 ASN B 228 GLU B 247 1 20 HELIX 26 AC8 ASN B 250 LEU B 264 1 15 HELIX 27 AC9 LYS B 266 LYS B 282 1 17 HELIX 28 AD1 HIS B 289 ARG B 304 1 16 HELIX 29 AD2 ASN B 306 TYR B 321 1 16 HELIX 30 AD3 ASP B 326 ILE B 334 1 9 SHEET 1 AA1 5 GLU A 106 TYR A 109 0 SHEET 2 AA1 5 GLU A 82 ASP A 87 1 N ASP A 87 O LYS A 108 SHEET 3 AA1 5 ILE A 56 VAL A 62 1 N CYS A 58 O GLU A 82 SHEET 4 AA1 5 TRP A 131 PHE A 134 1 O TRP A 131 N THR A 57 SHEET 5 AA1 5 MET A 183 ARG A 185 -1 O PHE A 184 N ILE A 132 SHEET 1 AA2 4 ASN A 139 TYR A 141 0 SHEET 2 AA2 4 ASN A 210 HIS A 219 -1 O TYR A 218 N LEU A 140 SHEET 3 AA2 4 VAL A 164 GLU A 171 1 N SER A 166 O PHE A 211 SHEET 4 AA2 4 LEU A 176 TYR A 177 -1 O TYR A 177 N ILE A 169 SHEET 1 AA3 2 VAL A 190 HIS A 193 0 SHEET 2 AA3 2 GLU A 199 ASN A 202 -1 O MET A 201 N LYS A 191 SHEET 1 AA4 5 GLU B 106 TYR B 109 0 SHEET 2 AA4 5 GLU B 82 ASP B 87 1 N ILE B 83 O GLU B 106 SHEET 3 AA4 5 ILE B 56 VAL B 62 1 N CYS B 58 O ILE B 84 SHEET 4 AA4 5 TRP B 131 PHE B 134 1 O TRP B 131 N THR B 57 SHEET 5 AA4 5 MET B 183 ARG B 185 -1 O PHE B 184 N ILE B 132 SHEET 1 AA5 4 ASN B 139 TYR B 141 0 SHEET 2 AA5 4 ASN B 210 HIS B 219 -1 O TYR B 218 N LEU B 140 SHEET 3 AA5 4 VAL B 164 GLU B 171 1 N GLU B 170 O VAL B 217 SHEET 4 AA5 4 LEU B 176 TYR B 177 -1 O TYR B 177 N ILE B 169 SHEET 1 AA6 2 VAL B 190 HIS B 193 0 SHEET 2 AA6 2 GLU B 199 ASN B 202 -1 O MET B 201 N LYS B 191 LINK OD1 ASP A 138 MG MG A 501 1555 1555 2.19 LINK OD2 ASP A 138 MG MG A 501 1555 1555 2.19 LINK O2A UPG A 500 MG MG A 501 1555 1555 2.15 LINK O2B UPG A 500 MG MG A 501 1555 1555 2.23 LINK MG MG A 501 O HOH A 634 1555 1555 1.88 LINK OD1 ASP B 138 MG MG B 501 1555 1555 2.30 LINK OD2 ASP B 138 MG MG B 501 1555 1555 1.99 LINK MG MG B 501 O2A UPG B 502 1555 1555 2.11 LINK MG MG B 501 O2B UPG B 502 1555 1555 2.09 LINK MG MG B 501 O HOH B 638 1555 1555 2.15 CRYST1 58.850 101.920 135.830 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007362 0.00000