data_7MSV # _entry.id 7MSV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7MSV pdb_00007msv 10.2210/pdb7msv/pdb WWPDB D_1000256837 ? ? BMRB 30907 ? 10.13018/BMR30907 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-10-20 2 'Structure model' 1 1 2021-10-27 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7MSV _pdbx_database_status.recvd_initial_deposition_date 2021-05-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution Structure of Berberine Bound to a dGMP Fill-in G-Quadruplex in the PDGFR-b Promoter' _pdbx_database_related.db_id 30907 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, K.B.' 1 ? 'Dickerhoff, J.' 2 ? 'Yang, D.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 143 _citation.language ? _citation.page_first 16549 _citation.page_last 16555 _citation.title 'Solution Structure of Ternary Complex of Berberine Bound to a dGMP-Fill-In Vacancy G-Quadruplex Formed in the PDGFR-beta Promoter.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.1c06200 _citation.pdbx_database_id_PubMed 34586799 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, K.B.' 1 ? primary 'Dickerhoff, J.' 2 ? primary 'Yang, D.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*AP*CP*A)-3') ; 6009.886 1 ? ? ? ? 2 non-polymer syn "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" 347.221 1 ? ? ? ? 3 non-polymer syn BERBERINE 336.361 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DA)(DG)(DG)(DG)(DA)(DG)(DG)(DG)(DC)(DG)(DG)(DC)(DG)(DG)(DG)(DA)(DC)(DA)' _entity_poly.pdbx_seq_one_letter_code_can AAGGGAGGGCGGCGGGACA _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" DGP 3 BERBERINE BER # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DC n 1 11 DG n 1 12 DG n 1 13 DC n 1 14 DG n 1 15 DG n 1 16 DG n 1 17 DA n 1 18 DC n 1 19 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 19 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BER non-polymer . BERBERINE ? 'C20 H18 N O4 1' 336.361 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DGP non-polymer n "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA5 X . n A 1 2 DA 2 2 2 DA DA X . n A 1 3 DG 3 3 3 DG DG X . n A 1 4 DG 4 4 4 DG DG X . n A 1 5 DG 5 5 5 DG DG X . n A 1 6 DA 6 6 6 DA DA X . n A 1 7 DG 7 7 7 DG DG X . n A 1 8 DG 8 8 8 DG DG X . n A 1 9 DG 9 9 9 DG DG X . n A 1 10 DC 10 10 10 DC DC X . n A 1 11 DG 11 11 11 DG DG X . n A 1 12 DG 12 12 12 DG DG X . n A 1 13 DC 13 13 13 DC DC X . n A 1 14 DG 14 14 14 DG DG X . n A 1 15 DG 15 15 15 DG DG X . n A 1 16 DG 16 16 16 DG DG X . n A 1 17 DA 17 17 17 DA DA X . n A 1 18 DC 18 18 18 DC DC X . n A 1 19 DA 19 19 19 DA DA3 X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DGP 1 101 20 DGP DGP X . C 3 BER 1 102 21 BER BER X . D 3 BER 1 103 22 BER BER X . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7MSV _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7MSV _struct.title 'Solution Structure of Berberine Bound to a dGMP Fill-in G-Quadruplex in the PDGFR-b Promoter' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7MSV _struct_keywords.text 'G-quadruplex, promoter, Guanine metabolite, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7MSV _struct_ref.pdbx_db_accession 7MSV _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7MSV _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 19 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7MSV _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 19 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 19 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1690 ? 1 MORE 21 ? 1 'SSA (A^2)' 3990 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 7 O6 ? ? X DG 3 X DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 7 N7 ? ? X DG 3 X DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 14 N2 ? ? X DG 3 X DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 14 N1 ? ? X DG 3 X DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? X DG 4 X DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? X DG 4 X DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 15 N2 ? ? X DG 4 X DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 15 N1 ? ? X DG 4 X DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 9 O6 ? ? X DG 5 X DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 9 N7 ? ? X DG 5 X DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 16 N2 ? ? X DG 5 X DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 16 N1 ? ? X DG 5 X DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 11 O6 ? ? X DG 8 X DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 11 N7 ? ? X DG 8 X DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 12 O6 ? ? X DG 9 X DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 12 N7 ? ? X DG 9 X DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 15 O6 ? ? X DG 11 X DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 15 N7 ? ? X DG 11 X DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 12 N1 ? ? ? 1_555 A DG 16 O6 ? ? X DG 12 X DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 12 N2 ? ? ? 1_555 A DG 16 N7 ? ? X DG 12 X DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 110.28 108.30 1.98 0.30 N 2 1 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.86 117.00 -3.14 0.50 N 3 1 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.58 117.70 3.88 0.50 N 4 1 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 112.90 118.60 -5.70 0.60 N 5 1 "O4'" X DA 2 ? ? "C1'" X DA 2 ? ? N9 X DA 2 ? ? 110.82 108.30 2.52 0.30 N 6 1 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.47 117.70 3.77 0.50 N 7 1 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 113.80 118.60 -4.80 0.60 N 8 1 "C3'" X DA 2 ? ? "O3'" X DA 2 ? ? P X DG 3 ? ? 127.90 119.70 8.20 1.20 Y 9 1 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.50 108.30 2.20 0.30 N 10 1 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.70 117.00 -3.30 0.50 N 11 1 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.43 117.70 3.73 0.50 N 12 1 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 113.02 118.60 -5.58 0.60 N 13 1 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.79 108.30 3.49 0.30 N 14 1 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.24 121.90 -4.66 0.70 N 15 1 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 111.07 108.30 2.77 0.30 N 16 1 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 110.30 108.30 2.00 0.30 N 17 1 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.21 121.90 -4.69 0.70 N 18 1 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.69 108.30 3.39 0.30 N 19 1 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.70 117.00 -3.30 0.50 N 20 1 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.42 117.70 3.72 0.50 N 21 1 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.05 118.60 -5.55 0.60 N 22 1 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.37 121.90 -4.53 0.70 N 23 1 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.96 108.30 2.66 0.30 N 24 1 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.66 117.00 -3.34 0.50 N 25 1 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.41 117.70 3.71 0.50 N 26 1 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.08 118.60 -5.52 0.60 N 27 2 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 110.22 108.30 1.92 0.30 N 28 2 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.83 117.00 -3.17 0.50 N 29 2 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.58 117.70 3.88 0.50 N 30 2 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 112.83 118.60 -5.77 0.60 N 31 2 "O4'" X DA 2 ? ? "C1'" X DA 2 ? ? N9 X DA 2 ? ? 110.80 108.30 2.50 0.30 N 32 2 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.97 117.00 -3.03 0.50 N 33 2 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.42 117.70 3.72 0.50 N 34 2 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 113.80 118.60 -4.80 0.60 N 35 2 "C3'" X DA 2 ? ? "O3'" X DA 2 ? ? P X DG 3 ? ? 127.84 119.70 8.14 1.20 Y 36 2 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.52 108.30 2.22 0.30 N 37 2 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.63 117.00 -3.37 0.50 N 38 2 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.46 117.70 3.76 0.50 N 39 2 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.87 118.60 -5.73 0.60 N 40 2 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.30 108.30 3.00 0.30 N 41 2 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 111.54 108.30 3.24 0.30 N 42 2 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.22 121.90 -4.68 0.70 N 43 2 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 111.16 108.30 2.86 0.30 N 44 2 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.11 108.30 1.81 0.30 N 45 2 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.10 121.90 -4.80 0.70 N 46 2 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.19 108.30 2.89 0.30 N 47 2 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.69 117.00 -3.31 0.50 N 48 2 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.37 117.70 3.67 0.50 N 49 2 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.11 118.60 -5.49 0.60 N 50 2 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.43 121.90 -4.47 0.70 N 51 2 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.43 108.30 2.13 0.30 N 52 2 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.64 117.00 -3.36 0.50 N 53 2 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.37 117.70 3.67 0.50 N 54 2 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.91 118.60 -5.69 0.60 N 55 3 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.93 117.00 -3.07 0.50 N 56 3 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.53 117.70 3.83 0.50 N 57 3 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 112.88 118.60 -5.72 0.60 N 58 3 "O4'" X DA 2 ? ? "C1'" X DA 2 ? ? N9 X DA 2 ? ? 110.82 108.30 2.52 0.30 N 59 3 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.99 117.00 -3.01 0.50 N 60 3 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.39 117.70 3.69 0.50 N 61 3 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 113.84 118.60 -4.76 0.60 N 62 3 "C3'" X DA 2 ? ? "O3'" X DA 2 ? ? P X DG 3 ? ? 127.62 119.70 7.92 1.20 Y 63 3 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.44 108.30 2.14 0.30 N 64 3 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.63 117.00 -3.37 0.50 N 65 3 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.41 117.70 3.71 0.50 N 66 3 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 113.00 118.60 -5.60 0.60 N 67 3 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.30 108.30 3.00 0.30 N 68 3 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 111.25 108.30 2.95 0.30 N 69 3 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.33 121.90 -4.57 0.70 N 70 3 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 111.01 108.30 2.71 0.30 N 71 3 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.36 108.30 2.06 0.30 N 72 3 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.17 121.90 -4.73 0.70 N 73 3 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.25 108.30 2.95 0.30 N 74 3 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.66 117.00 -3.34 0.50 N 75 3 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.45 117.70 3.75 0.50 N 76 3 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.17 118.60 -5.43 0.60 N 77 3 "O4'" X DC 18 ? ? "C1'" X DC 18 ? ? N1 X DC 18 ? ? 110.38 108.30 2.08 0.30 N 78 3 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.12 121.90 -4.78 0.70 N 79 3 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 111.24 108.30 2.94 0.30 N 80 3 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.57 117.00 -3.43 0.50 N 81 3 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.36 117.70 3.66 0.50 N 82 3 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.97 118.60 -5.63 0.60 N 83 4 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 110.15 108.30 1.85 0.30 N 84 4 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.88 117.00 -3.12 0.50 N 85 4 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.57 117.70 3.87 0.50 N 86 4 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 112.96 118.60 -5.64 0.60 N 87 4 "O4'" X DA 2 ? ? "C1'" X DA 2 ? ? N9 X DA 2 ? ? 110.72 108.30 2.42 0.30 N 88 4 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.88 117.00 -3.12 0.50 N 89 4 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.43 117.70 3.73 0.50 N 90 4 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 113.78 118.60 -4.82 0.60 N 91 4 "C3'" X DA 2 ? ? "O3'" X DA 2 ? ? P X DG 3 ? ? 127.76 119.70 8.06 1.20 Y 92 4 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.70 108.30 2.40 0.30 N 93 4 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.58 117.00 -3.42 0.50 N 94 4 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.47 117.70 3.77 0.50 N 95 4 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.89 118.60 -5.71 0.60 N 96 4 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.27 108.30 1.97 0.30 N 97 4 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.17 108.30 2.87 0.30 N 98 4 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 112.53 108.30 4.23 0.30 N 99 4 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.50 121.90 -4.40 0.70 N 100 4 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 111.50 108.30 3.20 0.30 N 101 4 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 111.26 108.30 2.96 0.30 N 102 4 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.41 108.30 2.11 0.30 N 103 4 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.11 121.90 -4.79 0.70 N 104 4 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.72 108.30 3.42 0.30 N 105 4 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.65 117.00 -3.35 0.50 N 106 4 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.43 117.70 3.73 0.50 N 107 4 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.01 118.60 -5.59 0.60 N 108 4 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.35 121.90 -4.55 0.70 N 109 4 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.11 108.30 1.81 0.30 N 110 4 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.60 117.00 -3.40 0.50 N 111 4 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.33 117.70 3.63 0.50 N 112 4 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.95 118.60 -5.65 0.60 N 113 5 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.86 117.00 -3.14 0.50 N 114 5 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.49 117.70 3.79 0.50 N 115 5 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 112.98 118.60 -5.62 0.60 N 116 5 "O4'" X DA 2 ? ? "C1'" X DA 2 ? ? N9 X DA 2 ? ? 110.97 108.30 2.67 0.30 N 117 5 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.94 117.00 -3.06 0.50 N 118 5 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.48 117.70 3.78 0.50 N 119 5 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 113.71 118.60 -4.89 0.60 N 120 5 "C3'" X DA 2 ? ? "O3'" X DA 2 ? ? P X DG 3 ? ? 127.94 119.70 8.24 1.20 Y 121 5 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.88 108.30 2.58 0.30 N 122 5 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.64 117.00 -3.36 0.50 N 123 5 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.42 117.70 3.72 0.50 N 124 5 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.97 118.60 -5.63 0.60 N 125 5 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.29 108.30 1.99 0.30 N 126 5 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.04 108.30 2.74 0.30 N 127 5 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.17 108.30 1.87 0.30 N 128 5 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.27 121.90 -4.63 0.70 N 129 5 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 111.09 108.30 2.79 0.30 N 130 5 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 110.69 108.30 2.39 0.30 N 131 5 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.19 121.90 -4.71 0.70 N 132 5 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.49 108.30 3.19 0.30 N 133 5 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.84 117.00 -3.16 0.50 N 134 5 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.59 117.70 3.89 0.50 N 135 5 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.17 118.60 -5.43 0.60 N 136 5 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.49 121.90 -4.41 0.70 N 137 5 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.22 108.30 1.92 0.30 N 138 5 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.70 117.00 -3.30 0.50 N 139 5 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.36 117.70 3.66 0.50 N 140 5 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.00 118.60 -5.60 0.60 N 141 6 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.88 117.00 -3.12 0.50 N 142 6 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.53 117.70 3.83 0.50 N 143 6 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 112.89 118.60 -5.71 0.60 N 144 6 "O4'" X DA 2 ? ? "C1'" X DA 2 ? ? N9 X DA 2 ? ? 110.45 108.30 2.15 0.30 N 145 6 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.93 117.00 -3.07 0.50 N 146 6 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.45 117.70 3.75 0.50 N 147 6 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 113.58 118.60 -5.02 0.60 N 148 6 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 111.87 108.30 3.57 0.30 N 149 6 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 110.16 108.30 1.86 0.30 N 150 6 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.69 117.00 -3.31 0.50 N 151 6 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.47 117.70 3.77 0.50 N 152 6 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.95 118.60 -5.65 0.60 N 153 6 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.86 108.30 2.56 0.30 N 154 6 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.82 108.30 3.52 0.30 N 155 6 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.37 121.90 -4.53 0.70 N 156 6 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 111.47 108.30 3.17 0.30 N 157 6 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 110.17 108.30 1.87 0.30 N 158 6 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.21 108.30 1.91 0.30 N 159 6 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.28 121.90 -4.62 0.70 N 160 6 "O4'" X DG 14 ? ? "C1'" X DG 14 ? ? N9 X DG 14 ? ? 110.14 108.30 1.84 0.30 N 161 6 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.17 108.30 2.87 0.30 N 162 6 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.70 117.00 -3.30 0.50 N 163 6 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.44 117.70 3.74 0.50 N 164 6 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.05 118.60 -5.55 0.60 N 165 6 "O4'" X DC 18 ? ? "C1'" X DC 18 ? ? N1 X DC 18 ? ? 110.18 108.30 1.88 0.30 N 166 6 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.50 121.90 -4.40 0.70 N 167 6 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.12 108.30 1.82 0.30 N 168 6 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.57 117.00 -3.43 0.50 N 169 6 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.46 117.70 3.76 0.50 N 170 6 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.01 118.60 -5.59 0.60 N 171 7 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 110.47 108.30 2.17 0.30 N 172 7 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.90 117.00 -3.10 0.50 N 173 7 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.55 117.70 3.85 0.50 N 174 7 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 112.92 118.60 -5.68 0.60 N 175 7 "O4'" X DA 2 ? ? "C1'" X DA 2 ? ? N9 X DA 2 ? ? 110.13 108.30 1.83 0.30 N 176 7 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.85 117.00 -3.15 0.50 N 177 7 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.48 117.70 3.78 0.50 N 178 7 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 113.71 118.60 -4.89 0.60 N 179 7 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 111.43 108.30 3.13 0.30 N 180 7 "O4'" X DA 6 ? ? "C1'" X DA 6 ? ? N9 X DA 6 ? ? 110.14 108.30 1.84 0.30 N 181 7 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.63 117.00 -3.37 0.50 N 182 7 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.48 117.70 3.78 0.50 N 183 7 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.92 118.60 -5.68 0.60 N 184 7 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.58 108.30 2.28 0.30 N 185 7 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.63 108.30 3.33 0.30 N 186 7 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.24 108.30 1.94 0.30 N 187 7 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.33 121.90 -4.57 0.70 N 188 7 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 111.16 108.30 2.86 0.30 N 189 7 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 110.64 108.30 2.34 0.30 N 190 7 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.13 108.30 1.83 0.30 N 191 7 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.10 121.90 -4.80 0.70 N 192 7 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 112.56 108.30 4.26 0.30 N 193 7 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.71 117.00 -3.29 0.50 N 194 7 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.53 117.70 3.83 0.50 N 195 7 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 112.97 118.60 -5.63 0.60 N 196 7 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.44 121.90 -4.46 0.70 N 197 7 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.24 108.30 1.94 0.30 N 198 7 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.66 117.00 -3.34 0.50 N 199 7 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.41 117.70 3.71 0.50 N 200 7 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.09 118.60 -5.51 0.60 N 201 8 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 110.23 108.30 1.93 0.30 N 202 8 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.94 117.00 -3.06 0.50 N 203 8 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.49 117.70 3.79 0.50 N 204 8 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 113.04 118.60 -5.56 0.60 N 205 8 "O4'" X DA 2 ? ? "C1'" X DA 2 ? ? N9 X DA 2 ? ? 110.73 108.30 2.43 0.30 N 206 8 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.92 117.00 -3.08 0.50 N 207 8 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.44 117.70 3.74 0.50 N 208 8 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 113.67 118.60 -4.93 0.60 N 209 8 "C3'" X DA 2 ? ? "O3'" X DA 2 ? ? P X DG 3 ? ? 127.62 119.70 7.92 1.20 Y 210 8 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.73 108.30 2.43 0.30 N 211 8 "O4'" X DA 6 ? ? "C1'" X DA 6 ? ? N9 X DA 6 ? ? 110.28 108.30 1.98 0.30 N 212 8 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.63 117.00 -3.37 0.50 N 213 8 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.44 117.70 3.74 0.50 N 214 8 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.96 118.60 -5.64 0.60 N 215 8 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.35 108.30 2.05 0.30 N 216 8 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.31 108.30 3.01 0.30 N 217 8 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 113.00 108.30 4.70 0.30 N 218 8 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 111.00 108.30 2.70 0.30 N 219 8 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.24 121.90 -4.66 0.70 N 220 8 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.59 108.30 3.29 0.30 N 221 8 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.65 117.00 -3.35 0.50 N 222 8 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.52 117.70 3.82 0.50 N 223 8 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 112.91 118.60 -5.69 0.60 N 224 8 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.32 121.90 -4.58 0.70 N 225 8 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.61 108.30 2.31 0.30 N 226 8 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.53 117.00 -3.47 0.50 N 227 8 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.40 117.70 3.70 0.50 N 228 8 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.03 118.60 -5.57 0.60 N 229 9 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 110.51 108.30 2.21 0.30 N 230 9 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.87 117.00 -3.13 0.50 N 231 9 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.53 117.70 3.83 0.50 N 232 9 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 112.99 118.60 -5.61 0.60 N 233 9 "O4'" X DA 2 ? ? "C1'" X DA 2 ? ? N9 X DA 2 ? ? 110.92 108.30 2.62 0.30 N 234 9 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.41 117.70 3.71 0.50 N 235 9 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 113.77 118.60 -4.83 0.60 N 236 9 "C3'" X DA 2 ? ? "O3'" X DA 2 ? ? P X DG 3 ? ? 128.11 119.70 8.41 1.20 Y 237 9 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.23 108.30 1.93 0.30 N 238 9 "O4'" X DG 4 ? ? "C1'" X DG 4 ? ? N9 X DG 4 ? ? 110.35 108.30 2.05 0.30 N 239 9 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 110.48 108.30 2.18 0.30 N 240 9 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.82 117.00 -3.18 0.50 N 241 9 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.33 117.70 3.63 0.50 N 242 9 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 113.14 118.60 -5.46 0.60 N 243 9 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.25 108.30 1.95 0.30 N 244 9 "O4'" X DG 8 ? ? "C1'" X DG 8 ? ? N9 X DG 8 ? ? 111.37 108.30 3.07 0.30 N 245 9 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 112.41 108.30 4.11 0.30 N 246 9 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 111.00 108.30 2.70 0.30 N 247 9 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.20 121.90 -4.70 0.70 N 248 9 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 111.47 108.30 3.17 0.30 N 249 9 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 110.47 108.30 2.17 0.30 N 250 9 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.21 108.30 1.91 0.30 N 251 9 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.30 121.90 -4.60 0.70 N 252 9 "O4'" X DG 15 ? ? "C1'" X DG 15 ? ? N9 X DG 15 ? ? 110.15 108.30 1.85 0.30 N 253 9 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.94 108.30 3.64 0.30 N 254 9 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.74 117.00 -3.26 0.50 N 255 9 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.45 117.70 3.75 0.50 N 256 9 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.05 118.60 -5.55 0.60 N 257 9 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.46 121.90 -4.44 0.70 N 258 9 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.67 117.00 -3.33 0.50 N 259 9 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.33 117.70 3.63 0.50 N 260 9 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.07 118.60 -5.53 0.60 N 261 10 "O4'" X DA 1 ? ? "C1'" X DA 1 ? ? N9 X DA 1 ? ? 110.18 108.30 1.88 0.30 N 262 10 C4 X DA 1 ? ? C5 X DA 1 ? ? C6 X DA 1 ? ? 113.88 117.00 -3.12 0.50 N 263 10 C5 X DA 1 ? ? C6 X DA 1 ? ? N1 X DA 1 ? ? 121.52 117.70 3.82 0.50 N 264 10 N1 X DA 1 ? ? C6 X DA 1 ? ? N6 X DA 1 ? ? 112.88 118.60 -5.72 0.60 N 265 10 "O4'" X DA 2 ? ? "C1'" X DA 2 ? ? N9 X DA 2 ? ? 110.42 108.30 2.12 0.30 N 266 10 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.91 117.00 -3.09 0.50 N 267 10 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.45 117.70 3.75 0.50 N 268 10 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 113.80 118.60 -4.80 0.60 N 269 10 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.50 108.30 2.20 0.30 N 270 10 "O4'" X DA 6 ? ? "C1'" X DA 6 ? ? N9 X DA 6 ? ? 110.78 108.30 2.48 0.30 N 271 10 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.77 117.00 -3.23 0.50 N 272 10 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.42 117.70 3.72 0.50 N 273 10 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 113.00 118.60 -5.60 0.60 N 274 10 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.67 108.30 2.37 0.30 N 275 10 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.16 108.30 2.86 0.30 N 276 10 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.50 108.30 2.20 0.30 N 277 10 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.16 121.90 -4.74 0.70 N 278 10 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.81 108.30 2.51 0.30 N 279 10 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.80 108.30 2.50 0.30 N 280 10 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.29 121.90 -4.61 0.70 N 281 10 "O4'" X DG 15 ? ? "C1'" X DG 15 ? ? N9 X DG 15 ? ? 110.92 108.30 2.62 0.30 N 282 10 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 113.29 108.30 4.99 0.30 N 283 10 "O4'" X DA 17 ? ? "C1'" X DA 17 ? ? N9 X DA 17 ? ? 111.60 108.30 3.30 0.30 N 284 10 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.79 117.00 -3.21 0.50 N 285 10 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.44 117.70 3.74 0.50 N 286 10 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.08 118.60 -5.52 0.60 N 287 10 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.25 121.90 -4.65 0.70 N 288 10 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.59 117.00 -3.41 0.50 N 289 10 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.34 117.70 3.64 0.50 N 290 10 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 113.10 118.60 -5.50 0.60 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 6 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id X _pdbx_validate_planes.auth_seq_id 7 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.050 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_entry_details.entry_id 7MSV _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 7MSV _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7MSV _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1.5 mM BER-dGMP-Pu19m2, 90% H2O/10% D2O' '90% H2O/10% D2O' NO solution 'The ternary complex of berberine bound to dGMP fill-in G4 sample was used for 2D NMR data collection.' 2 '9 mM [U-100% 13C; U-100% 15N] dGMP, 90% H2O/10% D2O' '90% H2O/10% D2O' 13C_15N_dGMP solution ;The dGMP was involved in the G4 formation in the ternary complex and was confirmed by using 13C-15N-labeled dGMP with 15N-edited experiments ; # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 BER-dGMP-Pu19m2 1.5 ? mM 'natural abundance' 2 dGMP 9 ? mM '[U-100% 13C; U-100% 15N]' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 mmHg 760 7.0 50 ? ? mM conditions_1 ? pH ? ? K 2 288 mmHg 760 7.0 50 ? ? mM conditions_2 ? pH ? ? K 3 308 mmHg 760 7.0 50 ? ? mM conditions_3 ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 2 anisotropic 2 2 1 '2D 1H-1H NOESY' 2 anisotropic 3 3 1 '2D 1H-1H NOESY' 2 anisotropic 4 1 1 '2D 1H-13C HSQC' 2 anisotropic 5 1 1 '2D 1H-1H TOCSY' 2 anisotropic 6 1 2 '1D GEJRSE HMQC' 2 anisotropic # _pdbx_nmr_refine.entry_id 7MSV _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 'chemical shift assignment' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL.' 3 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 4 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BER C1 C Y N 1 BER C2 C Y N 2 BER N1 N Y N 3 BER C3 C Y N 4 BER C4 C Y N 5 BER C5 C Y N 6 BER C6 C Y N 7 BER C7 C N N 8 BER C8 C Y N 9 BER C9 C Y N 10 BER C10 C N N 11 BER C11 C Y N 12 BER C12 C Y N 13 BER C13 C Y N 14 BER C14 C Y N 15 BER O1 O N N 16 BER C15 C Y N 17 BER C16 C Y N 18 BER O2 O N N 19 BER C17 C N N 20 BER C18 C Y N 21 BER O3 O N N 22 BER O4 O N N 23 BER C19 C N N 24 BER C20 C N N 25 BER H31 H N N 26 BER H51 H N N 27 BER H61 H N N 28 BER H71 H N N 29 BER H72 H N N 30 BER H91 H N N 31 BER H101 H N N 32 BER H102 H N N 33 BER H131 H N N 34 BER H161 H N N 35 BER H171 H N N 36 BER H172 H N N 37 BER H191 H N N 38 BER H192 H N N 39 BER H193 H N N 40 BER H201 H N N 41 BER H202 H N N 42 BER H203 H N N 43 DA OP3 O N N 44 DA P P N N 45 DA OP1 O N N 46 DA OP2 O N N 47 DA "O5'" O N N 48 DA "C5'" C N N 49 DA "C4'" C N R 50 DA "O4'" O N N 51 DA "C3'" C N S 52 DA "O3'" O N N 53 DA "C2'" C N N 54 DA "C1'" C N R 55 DA N9 N Y N 56 DA C8 C Y N 57 DA N7 N Y N 58 DA C5 C Y N 59 DA C6 C Y N 60 DA N6 N N N 61 DA N1 N Y N 62 DA C2 C Y N 63 DA N3 N Y N 64 DA C4 C Y N 65 DA HOP3 H N N 66 DA HOP2 H N N 67 DA "H5'" H N N 68 DA "H5''" H N N 69 DA "H4'" H N N 70 DA "H3'" H N N 71 DA "HO3'" H N N 72 DA "H2'" H N N 73 DA "H2''" H N N 74 DA "H1'" H N N 75 DA H8 H N N 76 DA H61 H N N 77 DA H62 H N N 78 DA H2 H N N 79 DC OP3 O N N 80 DC P P N N 81 DC OP1 O N N 82 DC OP2 O N N 83 DC "O5'" O N N 84 DC "C5'" C N N 85 DC "C4'" C N R 86 DC "O4'" O N N 87 DC "C3'" C N S 88 DC "O3'" O N N 89 DC "C2'" C N N 90 DC "C1'" C N R 91 DC N1 N N N 92 DC C2 C N N 93 DC O2 O N N 94 DC N3 N N N 95 DC C4 C N N 96 DC N4 N N N 97 DC C5 C N N 98 DC C6 C N N 99 DC HOP3 H N N 100 DC HOP2 H N N 101 DC "H5'" H N N 102 DC "H5''" H N N 103 DC "H4'" H N N 104 DC "H3'" H N N 105 DC "HO3'" H N N 106 DC "H2'" H N N 107 DC "H2''" H N N 108 DC "H1'" H N N 109 DC H41 H N N 110 DC H42 H N N 111 DC H5 H N N 112 DC H6 H N N 113 DG OP3 O N N 114 DG P P N N 115 DG OP1 O N N 116 DG OP2 O N N 117 DG "O5'" O N N 118 DG "C5'" C N N 119 DG "C4'" C N R 120 DG "O4'" O N N 121 DG "C3'" C N S 122 DG "O3'" O N N 123 DG "C2'" C N N 124 DG "C1'" C N R 125 DG N9 N Y N 126 DG C8 C Y N 127 DG N7 N Y N 128 DG C5 C Y N 129 DG C6 C N N 130 DG O6 O N N 131 DG N1 N N N 132 DG C2 C N N 133 DG N2 N N N 134 DG N3 N N N 135 DG C4 C Y N 136 DG HOP3 H N N 137 DG HOP2 H N N 138 DG "H5'" H N N 139 DG "H5''" H N N 140 DG "H4'" H N N 141 DG "H3'" H N N 142 DG "HO3'" H N N 143 DG "H2'" H N N 144 DG "H2''" H N N 145 DG "H1'" H N N 146 DG H8 H N N 147 DG H1 H N N 148 DG H21 H N N 149 DG H22 H N N 150 DGP P P N N 151 DGP OP1 O N N 152 DGP OP2 O N N 153 DGP OP3 O N N 154 DGP "O5'" O N N 155 DGP "C5'" C N N 156 DGP "C4'" C N R 157 DGP "O4'" O N N 158 DGP "C3'" C N S 159 DGP "O3'" O N N 160 DGP "C2'" C N N 161 DGP "C1'" C N R 162 DGP N9 N Y N 163 DGP C8 C Y N 164 DGP N7 N Y N 165 DGP C5 C Y N 166 DGP C6 C N N 167 DGP O6 O N N 168 DGP N1 N N N 169 DGP C2 C N N 170 DGP N2 N N N 171 DGP N3 N N N 172 DGP C4 C Y N 173 DGP HOP2 H N N 174 DGP HOP3 H N N 175 DGP "H5'" H N N 176 DGP "H5''" H N N 177 DGP "H4'" H N N 178 DGP "H3'" H N N 179 DGP "HO3'" H N N 180 DGP "H2'" H N N 181 DGP "H2''" H N N 182 DGP "H1'" H N N 183 DGP H8 H N N 184 DGP HN1 H N N 185 DGP HN21 H N N 186 DGP HN22 H N N 187 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BER C1 C2 sing Y N 1 BER C1 N1 doub Y N 2 BER C1 C3 sing Y N 3 BER C2 C4 doub Y N 4 BER C2 C5 sing Y N 5 BER N1 C6 sing Y N 6 BER N1 C7 sing N N 7 BER C3 C8 doub Y N 8 BER C3 H31 sing N N 9 BER C4 C9 sing Y N 10 BER C4 C10 sing N N 11 BER C5 C11 doub Y N 12 BER C5 H51 sing N N 13 BER C6 C12 doub Y N 14 BER C6 H61 sing N N 15 BER C7 C10 sing N N 16 BER C7 H71 sing N N 17 BER C7 H72 sing N N 18 BER C8 C12 sing Y N 19 BER C8 C13 sing Y N 20 BER C9 C14 doub Y N 21 BER C9 H91 sing N N 22 BER C10 H101 sing N N 23 BER C10 H102 sing N N 24 BER C11 C14 sing Y N 25 BER C11 O1 sing N N 26 BER C12 C15 sing Y N 27 BER C13 C16 doub Y N 28 BER C13 H131 sing N N 29 BER C14 O2 sing N N 30 BER O1 C17 sing N N 31 BER C15 C18 doub Y N 32 BER C15 O3 sing N N 33 BER C16 C18 sing Y N 34 BER C16 H161 sing N N 35 BER O2 C17 sing N N 36 BER C17 H171 sing N N 37 BER C17 H172 sing N N 38 BER C18 O4 sing N N 39 BER O3 C19 sing N N 40 BER O4 C20 sing N N 41 BER C19 H191 sing N N 42 BER C19 H192 sing N N 43 BER C19 H193 sing N N 44 BER C20 H201 sing N N 45 BER C20 H202 sing N N 46 BER C20 H203 sing N N 47 DA OP3 P sing N N 48 DA OP3 HOP3 sing N N 49 DA P OP1 doub N N 50 DA P OP2 sing N N 51 DA P "O5'" sing N N 52 DA OP2 HOP2 sing N N 53 DA "O5'" "C5'" sing N N 54 DA "C5'" "C4'" sing N N 55 DA "C5'" "H5'" sing N N 56 DA "C5'" "H5''" sing N N 57 DA "C4'" "O4'" sing N N 58 DA "C4'" "C3'" sing N N 59 DA "C4'" "H4'" sing N N 60 DA "O4'" "C1'" sing N N 61 DA "C3'" "O3'" sing N N 62 DA "C3'" "C2'" sing N N 63 DA "C3'" "H3'" sing N N 64 DA "O3'" "HO3'" sing N N 65 DA "C2'" "C1'" sing N N 66 DA "C2'" "H2'" sing N N 67 DA "C2'" "H2''" sing N N 68 DA "C1'" N9 sing N N 69 DA "C1'" "H1'" sing N N 70 DA N9 C8 sing Y N 71 DA N9 C4 sing Y N 72 DA C8 N7 doub Y N 73 DA C8 H8 sing N N 74 DA N7 C5 sing Y N 75 DA C5 C6 sing Y N 76 DA C5 C4 doub Y N 77 DA C6 N6 sing N N 78 DA C6 N1 doub Y N 79 DA N6 H61 sing N N 80 DA N6 H62 sing N N 81 DA N1 C2 sing Y N 82 DA C2 N3 doub Y N 83 DA C2 H2 sing N N 84 DA N3 C4 sing Y N 85 DC OP3 P sing N N 86 DC OP3 HOP3 sing N N 87 DC P OP1 doub N N 88 DC P OP2 sing N N 89 DC P "O5'" sing N N 90 DC OP2 HOP2 sing N N 91 DC "O5'" "C5'" sing N N 92 DC "C5'" "C4'" sing N N 93 DC "C5'" "H5'" sing N N 94 DC "C5'" "H5''" sing N N 95 DC "C4'" "O4'" sing N N 96 DC "C4'" "C3'" sing N N 97 DC "C4'" "H4'" sing N N 98 DC "O4'" "C1'" sing N N 99 DC "C3'" "O3'" sing N N 100 DC "C3'" "C2'" sing N N 101 DC "C3'" "H3'" sing N N 102 DC "O3'" "HO3'" sing N N 103 DC "C2'" "C1'" sing N N 104 DC "C2'" "H2'" sing N N 105 DC "C2'" "H2''" sing N N 106 DC "C1'" N1 sing N N 107 DC "C1'" "H1'" sing N N 108 DC N1 C2 sing N N 109 DC N1 C6 sing N N 110 DC C2 O2 doub N N 111 DC C2 N3 sing N N 112 DC N3 C4 doub N N 113 DC C4 N4 sing N N 114 DC C4 C5 sing N N 115 DC N4 H41 sing N N 116 DC N4 H42 sing N N 117 DC C5 C6 doub N N 118 DC C5 H5 sing N N 119 DC C6 H6 sing N N 120 DG OP3 P sing N N 121 DG OP3 HOP3 sing N N 122 DG P OP1 doub N N 123 DG P OP2 sing N N 124 DG P "O5'" sing N N 125 DG OP2 HOP2 sing N N 126 DG "O5'" "C5'" sing N N 127 DG "C5'" "C4'" sing N N 128 DG "C5'" "H5'" sing N N 129 DG "C5'" "H5''" sing N N 130 DG "C4'" "O4'" sing N N 131 DG "C4'" "C3'" sing N N 132 DG "C4'" "H4'" sing N N 133 DG "O4'" "C1'" sing N N 134 DG "C3'" "O3'" sing N N 135 DG "C3'" "C2'" sing N N 136 DG "C3'" "H3'" sing N N 137 DG "O3'" "HO3'" sing N N 138 DG "C2'" "C1'" sing N N 139 DG "C2'" "H2'" sing N N 140 DG "C2'" "H2''" sing N N 141 DG "C1'" N9 sing N N 142 DG "C1'" "H1'" sing N N 143 DG N9 C8 sing Y N 144 DG N9 C4 sing Y N 145 DG C8 N7 doub Y N 146 DG C8 H8 sing N N 147 DG N7 C5 sing Y N 148 DG C5 C6 sing N N 149 DG C5 C4 doub Y N 150 DG C6 O6 doub N N 151 DG C6 N1 sing N N 152 DG N1 C2 sing N N 153 DG N1 H1 sing N N 154 DG C2 N2 sing N N 155 DG C2 N3 doub N N 156 DG N2 H21 sing N N 157 DG N2 H22 sing N N 158 DG N3 C4 sing N N 159 DGP P OP1 doub N N 160 DGP P OP2 sing N N 161 DGP P OP3 sing N N 162 DGP P "O5'" sing N N 163 DGP OP2 HOP2 sing N N 164 DGP OP3 HOP3 sing N N 165 DGP "O5'" "C5'" sing N N 166 DGP "C5'" "C4'" sing N N 167 DGP "C5'" "H5'" sing N N 168 DGP "C5'" "H5''" sing N N 169 DGP "C4'" "O4'" sing N N 170 DGP "C4'" "C3'" sing N N 171 DGP "C4'" "H4'" sing N N 172 DGP "O4'" "C1'" sing N N 173 DGP "C3'" "O3'" sing N N 174 DGP "C3'" "C2'" sing N N 175 DGP "C3'" "H3'" sing N N 176 DGP "O3'" "HO3'" sing N N 177 DGP "C2'" "C1'" sing N N 178 DGP "C2'" "H2'" sing N N 179 DGP "C2'" "H2''" sing N N 180 DGP "C1'" N9 sing N N 181 DGP "C1'" "H1'" sing N N 182 DGP N9 C8 sing Y N 183 DGP N9 C4 sing Y N 184 DGP C8 N7 doub Y N 185 DGP C8 H8 sing N N 186 DGP N7 C5 sing Y N 187 DGP C5 C6 sing N N 188 DGP C5 C4 doub Y N 189 DGP C6 O6 doub N N 190 DGP C6 N1 sing N N 191 DGP N1 C2 sing N N 192 DGP N1 HN1 sing N N 193 DGP C2 N2 sing N N 194 DGP C2 N3 doub N N 195 DGP N2 HN21 sing N N 196 DGP N2 HN22 sing N N 197 DGP N3 C4 sing N N 198 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7MSV 'double helix' 7MSV 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 A DG 7 1_555 1.796 3.381 0.069 -11.601 -2.898 -88.402 1 X_DG3:DG7_X X 3 ? X 7 ? 6 3 1 A DG 4 1_555 A DG 15 1_555 -1.735 -3.401 -0.011 1.379 -3.518 89.316 2 X_DG4:DG15_X X 4 ? X 15 ? 6 3 1 A DG 12 1_555 A DG 16 1_555 -1.793 3.349 0.001 8.090 -0.117 89.415 3 X_DG12:DG16_X X 12 ? X 16 ? 6 3 1 A DG 8 1_555 A DG 11 1_555 -1.688 3.419 0.092 1.988 -0.276 89.837 4 X_DG8:DG11_X X 8 ? X 11 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 A DG 7 1_555 A DG 4 1_555 A DG 15 1_555 1.009 1.751 3.398 -4.106 1.643 -61.947 -1.777 0.781 3.409 -1.594 -3.984 -62.089 1 XX_DG3DG4:DG15DG7_XX X 3 ? X 7 ? X 4 ? X 15 ? 1 A DG 12 1_555 A DG 16 1_555 A DG 8 1_555 A DG 11 1_555 -1.498 3.159 3.347 8.727 1.304 118.426 1.824 0.958 3.297 0.758 -5.076 118.628 2 XX_DG12DG8:DG11DG16_XX X 12 ? X 16 ? X 8 ? X 11 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01CA177585 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AV-500 ? Bruker 500 ? 2 AV-800 ? Bruker 800 ? # _atom_sites.entry_id 7MSV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_