HEADER OXIDOREDUCTASE 17-MAY-21 7MWV TITLE STRUCTURE OF THE E. COLI PUTA PROLINE DEHYDROGENASE DOMAIN (RESIDUES TITLE 2 86-630) COMPLEXED WITH CYCLOPROPANECARBOXYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PROTEIN PUTA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 86-630; COMPND 5 EC: 1.5.5.2,1.2.1.88; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PUTA, SAMEA3472047_03659; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA/ALPHA BARREL, FLAVOENZYME, PROLINE CATABOLISM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.TANNER,A.N.BOGNER REVDAT 4 18-OCT-23 7MWV 1 REMARK REVDAT 3 09-FEB-22 7MWV 1 JRNL REVDAT 2 02-FEB-22 7MWV 1 JRNL REVDAT 1 19-JAN-22 7MWV 0 JRNL AUTH A.N.BOGNER,J.J.TANNER JRNL TITL STRUCTURE-AFFINITY RELATIONSHIPS OF REVERSIBLE PROLINE JRNL TITL 2 ANALOG INHIBITORS TARGETING PROLINE DEHYDROGENASE. JRNL REF ORG.BIOMOL.CHEM. V. 20 895 2022 JRNL REFN ESSN 1477-0539 JRNL PMID 35018940 JRNL DOI 10.1039/D1OB02328D REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 84660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 4300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 73.1500 - 5.2400 1.00 2915 142 0.1888 0.2249 REMARK 3 2 5.2400 - 4.1600 1.00 2787 141 0.1538 0.1636 REMARK 3 3 4.1600 - 3.6300 1.00 2739 145 0.1673 0.1725 REMARK 3 4 3.6300 - 3.3000 1.00 2753 148 0.1954 0.2065 REMARK 3 5 3.3000 - 3.0600 1.00 2744 128 0.2031 0.2053 REMARK 3 6 3.0600 - 2.8800 1.00 2728 145 0.2199 0.2930 REMARK 3 7 2.8800 - 2.7400 1.00 2732 141 0.2167 0.2713 REMARK 3 8 2.7400 - 2.6200 1.00 2685 149 0.2055 0.2640 REMARK 3 9 2.6200 - 2.5200 1.00 2670 176 0.2045 0.2291 REMARK 3 10 2.5200 - 2.4300 1.00 2682 169 0.2031 0.2270 REMARK 3 11 2.4300 - 2.3600 1.00 2700 140 0.2033 0.2380 REMARK 3 12 2.3600 - 2.2900 1.00 2707 150 0.2078 0.2664 REMARK 3 13 2.2900 - 2.2300 1.00 2723 133 0.2102 0.2555 REMARK 3 14 2.2300 - 2.1700 1.00 2693 136 0.2093 0.2761 REMARK 3 15 2.1700 - 2.1200 1.00 2669 133 0.2376 0.2667 REMARK 3 16 2.1200 - 2.0800 1.00 2690 147 0.2526 0.2723 REMARK 3 17 2.0800 - 2.0400 1.00 2693 135 0.2486 0.2854 REMARK 3 18 2.0400 - 2.0000 1.00 2701 130 0.2369 0.2704 REMARK 3 19 2.0000 - 1.9600 1.00 2690 142 0.2304 0.2287 REMARK 3 20 1.9600 - 1.9300 1.00 2687 149 0.2300 0.2585 REMARK 3 21 1.9300 - 1.9000 1.00 2666 135 0.2474 0.2843 REMARK 3 22 1.9000 - 1.8700 1.00 2681 143 0.2673 0.3059 REMARK 3 23 1.8700 - 1.8400 1.00 2690 170 0.3093 0.3202 REMARK 3 24 1.8400 - 1.8200 1.00 2670 139 0.3443 0.3667 REMARK 3 25 1.8200 - 1.7900 1.00 2662 156 0.3841 0.3973 REMARK 3 26 1.7900 - 1.7700 1.00 2669 158 0.4113 0.4170 REMARK 3 27 1.7700 - 1.7500 1.00 2650 143 0.4781 0.5211 REMARK 3 28 1.7500 - 1.7300 0.99 2663 138 0.5267 0.5660 REMARK 3 29 1.7300 - 1.7100 0.97 2611 146 0.5776 0.5811 REMARK 3 30 1.7100 - 1.6900 0.75 2010 93 0.6577 0.6534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND PEPTIDE) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9564 49.4609 49.6543 REMARK 3 T TENSOR REMARK 3 T11: 0.2045 T22: 0.3358 REMARK 3 T33: 0.1827 T12: -0.0101 REMARK 3 T13: 0.0198 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.6028 L22: 0.7843 REMARK 3 L33: 1.0507 L12: -0.1450 REMARK 3 L13: -0.0924 L23: 0.0600 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: 0.1144 S13: -0.0092 REMARK 3 S21: -0.1193 S22: 0.0298 S23: -0.0203 REMARK 3 S31: -0.0984 S32: 0.0868 S33: -0.0511 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MWV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6-6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85319 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 73.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 2.98900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3E2R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-28% PEG 3000, 100 MM SODIUM REMARK 280 CITRATE, SOAKED CRYSTALS WITH 50 MM CYCLOPROPANECARBOXYLIC ACID, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.49550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.86900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.14950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.49550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.86900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.14950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.49550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.86900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.14950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.49550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.86900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.14950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2108 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 86 REMARK 465 PRO A 87 REMARK 465 SER A 190 REMARK 465 ASN A 191 REMARK 465 GLY A 192 REMARK 465 ASN A 193 REMARK 465 TRP A 194 REMARK 465 GLN A 195 REMARK 465 SER A 196 REMARK 465 HIS A 197 REMARK 465 ILE A 198 REMARK 465 GLY A 199 REMARK 465 ARG A 200 REMARK 465 SER A 201 REMARK 465 PRO A 202 REMARK 465 SER A 203 REMARK 465 THR A 216 REMARK 465 GLY A 217 REMARK 465 LYS A 218 REMARK 465 LEU A 219 REMARK 465 VAL A 220 REMARK 465 SER A 221 REMARK 465 THR A 222 REMARK 465 HIS A 223 REMARK 465 ASN A 224 REMARK 465 GLU A 225 REMARK 465 LEU A 611 REMARK 465 TYR A 612 REMARK 465 GLY A 613 REMARK 465 HIS A 614 REMARK 465 GLY A 615 REMARK 465 ARG A 616 REMARK 465 ASP A 617 REMARK 465 ASN A 618 REMARK 465 SER A 619 REMARK 465 ALA A 620 REMARK 465 GLY A 621 REMARK 465 LEU A 622 REMARK 465 ASP A 623 REMARK 465 LEU A 624 REMARK 465 ALA A 625 REMARK 465 ASN A 626 REMARK 465 GLU A 627 REMARK 465 HIS A 628 REMARK 465 ARG A 629 REMARK 465 LEU A 630 REMARK 465 HIS A 631 REMARK 465 HIS A 632 REMARK 465 HIS A 633 REMARK 465 HIS A 634 REMARK 465 HIS A 635 REMARK 465 HIS A 636 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 118 CG CD OE1 NE2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LYS A 134 CE NZ REMARK 470 GLN A 138 CG CD OE1 NE2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 SER A 142 OG REMARK 470 MET A 147 CG SD CE REMARK 470 VAL A 148 CG1 CG2 REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 LEU A 151 CG CD1 CD2 REMARK 470 LEU A 152 CG CD1 CD2 REMARK 470 GLN A 153 CG CD OE1 NE2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 PHE A 155 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 156 OG REMARK 470 LEU A 157 CG CD1 CD2 REMARK 470 SER A 158 OG REMARK 470 SER A 159 OG REMARK 470 GLN A 160 CG CD OE1 NE2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 ARG A 186 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 187 CG OD1 OD2 REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 VAL A 206 CG1 CG2 REMARK 470 LEU A 213 CG CD1 CD2 REMARK 470 LEU A 214 CG CD1 CD2 REMARK 470 LEU A 228 CG CD1 CD2 REMARK 470 SER A 229 OG REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 SER A 231 OG REMARK 470 ASN A 233 CG OD1 ND2 REMARK 470 ARG A 234 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 235 CG1 CG2 CD1 REMARK 470 ILE A 236 CG1 CG2 CD1 REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 SER A 239 OG REMARK 470 LEU A 243 CG CD1 CD2 REMARK 470 ILE A 244 CG1 CG2 CD1 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 274 CD CE NZ REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 GLN A 341 CG CD OE1 NE2 REMARK 470 ARG A 344 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 392 CG CD OE1 OE2 REMARK 470 ARG A 425 CZ NH1 NH2 REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 GLN A 501 CG CD OE1 NE2 REMARK 470 GLU A 518 CG CD OE1 OE2 REMARK 470 GLU A 522 CG CD OE1 OE2 REMARK 470 GLU A 547 CG CD OE1 OE2 REMARK 470 LYS A 590 CG CD CE NZ REMARK 470 LYS A 604 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 188 18.12 -159.25 REMARK 500 PHE A 205 37.22 -99.49 REMARK 500 ASN A 207 22.53 -75.97 REMARK 500 GLU A 372 -134.87 -119.22 REMARK 500 ASN A 502 51.37 74.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZPJ A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 2004 DBREF1 7MWV A 86 630 UNP A0A383H020_ECOLX DBREF2 7MWV A A0A383H020 86 630 SEQADV 7MWV HIS A 631 UNP A0A383H02 EXPRESSION TAG SEQADV 7MWV HIS A 632 UNP A0A383H02 EXPRESSION TAG SEQADV 7MWV HIS A 633 UNP A0A383H02 EXPRESSION TAG SEQADV 7MWV HIS A 634 UNP A0A383H02 EXPRESSION TAG SEQADV 7MWV HIS A 635 UNP A0A383H02 EXPRESSION TAG SEQADV 7MWV HIS A 636 UNP A0A383H02 EXPRESSION TAG SEQRES 1 A 551 LEU PRO GLN SER VAL SER ARG ALA ALA ILE THR ALA ALA SEQRES 2 A 551 TYR ARG ARG PRO GLU THR GLU ALA VAL SER MET LEU LEU SEQRES 3 A 551 GLU GLN ALA ARG LEU PRO GLN PRO VAL ALA GLU GLN ALA SEQRES 4 A 551 HIS LYS LEU ALA TYR GLN LEU ALA ASP LYS LEU ARG ASN SEQRES 5 A 551 GLN LYS ASN ALA SER GLY ARG ALA GLY MET VAL GLN GLY SEQRES 6 A 551 LEU LEU GLN GLU PHE SER LEU SER SER GLN GLU GLY VAL SEQRES 7 A 551 ALA LEU MET CYS LEU ALA GLU ALA LEU LEU ARG ILE PRO SEQRES 8 A 551 ASP LYS ALA THR ARG ASP ALA LEU ILE ARG ASP LYS ILE SEQRES 9 A 551 SER ASN GLY ASN TRP GLN SER HIS ILE GLY ARG SER PRO SEQRES 10 A 551 SER LEU PHE VAL ASN ALA ALA THR TRP GLY LEU LEU PHE SEQRES 11 A 551 THR GLY LYS LEU VAL SER THR HIS ASN GLU ALA SER LEU SEQRES 12 A 551 SER ARG SER LEU ASN ARG ILE ILE GLY LYS SER GLY GLU SEQRES 13 A 551 PRO LEU ILE ARG LYS GLY VAL ASP MET ALA MET ARG LEU SEQRES 14 A 551 MET GLY GLU GLN PHE VAL THR GLY GLU THR ILE ALA GLU SEQRES 15 A 551 ALA LEU ALA ASN ALA ARG LYS LEU GLU GLU LYS GLY PHE SEQRES 16 A 551 ARG TYR SER TYR ASP MET LEU GLY GLU ALA ALA LEU THR SEQRES 17 A 551 ALA ALA ASP ALA GLN ALA TYR MET VAL SER TYR GLN GLN SEQRES 18 A 551 ALA ILE HIS ALA ILE GLY LYS ALA SER ASN GLY ARG GLY SEQRES 19 A 551 ILE TYR GLU GLY PRO GLY ILE SER ILE LYS LEU SER ALA SEQRES 20 A 551 LEU HIS PRO ARG TYR SER ARG ALA GLN TYR ASP ARG VAL SEQRES 21 A 551 MET GLU GLU LEU TYR PRO ARG LEU LYS SER LEU THR LEU SEQRES 22 A 551 LEU ALA ARG GLN TYR ASP ILE GLY ILE ASN ILE ASP ALA SEQRES 23 A 551 GLU GLU SER ASP ARG LEU GLU ILE SER LEU ASP LEU LEU SEQRES 24 A 551 GLU LYS LEU CYS PHE GLU PRO GLU LEU ALA GLY TRP ASN SEQRES 25 A 551 GLY ILE GLY PHE VAL ILE GLN ALA TYR GLN LYS ARG CYS SEQRES 26 A 551 PRO LEU VAL ILE ASP TYR LEU ILE ASP LEU ALA THR ARG SEQRES 27 A 551 SER ARG ARG ARG LEU MET ILE ARG LEU VAL LYS GLY ALA SEQRES 28 A 551 TYR TRP ASP SER GLU ILE LYS ARG ALA GLN MET ASP GLY SEQRES 29 A 551 LEU GLU GLY TYR PRO VAL TYR THR ARG LYS VAL TYR THR SEQRES 30 A 551 ASP VAL SER TYR LEU ALA CYS ALA LYS LYS LEU LEU ALA SEQRES 31 A 551 VAL PRO ASN LEU ILE TYR PRO GLN PHE ALA THR HIS ASN SEQRES 32 A 551 ALA HIS THR LEU ALA ALA ILE TYR GLN LEU ALA GLY GLN SEQRES 33 A 551 ASN TYR TYR PRO GLY GLN TYR GLU PHE GLN CYS LEU HIS SEQRES 34 A 551 GLY MET GLY GLU PRO LEU TYR GLU GLN VAL THR GLY LYS SEQRES 35 A 551 VAL ALA ASP GLY LYS LEU ASN ARG PRO CYS ARG ILE TYR SEQRES 36 A 551 ALA PRO VAL GLY THR HIS GLU THR LEU LEU ALA TYR LEU SEQRES 37 A 551 VAL ARG ARG LEU LEU GLU ASN GLY ALA ASN THR SER PHE SEQRES 38 A 551 VAL ASN ARG ILE ALA ASP THR SER LEU PRO LEU ASP GLU SEQRES 39 A 551 LEU VAL ALA ASP PRO VAL THR ALA VAL GLU LYS LEU ALA SEQRES 40 A 551 GLN GLN GLU GLY GLN THR GLY LEU PRO HIS PRO LYS ILE SEQRES 41 A 551 PRO LEU PRO ARG ASP LEU TYR GLY HIS GLY ARG ASP ASN SEQRES 42 A 551 SER ALA GLY LEU ASP LEU ALA ASN GLU HIS ARG LEU HIS SEQRES 43 A 551 HIS HIS HIS HIS HIS HET FAD A2001 53 HET ZPJ A2002 6 HET PG4 A2003 13 HET 1PE A2004 16 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM ZPJ CYCLOPROPANECARBOXYLIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 ZPJ C4 H6 O2 FORMUL 4 PG4 C8 H18 O5 FORMUL 5 1PE C10 H22 O6 FORMUL 6 HOH *247(H2 O) HELIX 1 AA1 SER A 89 TYR A 99 1 11 HELIX 2 AA2 PRO A 102 ARG A 115 1 14 HELIX 3 AA3 PRO A 117 ASN A 137 1 21 HELIX 4 AA4 ASN A 140 PHE A 155 1 16 HELIX 5 AA5 SER A 158 ARG A 174 1 17 HELIX 6 AA6 ASP A 177 ILE A 189 1 13 HELIX 7 AA7 ASN A 207 LEU A 213 1 7 HELIX 8 AA8 SER A 227 GLU A 257 1 31 HELIX 9 AA9 GLN A 258 VAL A 260 5 3 HELIX 10 AB1 THR A 264 ASN A 271 1 8 HELIX 11 AB2 ALA A 272 GLU A 277 1 6 HELIX 12 AB3 THR A 293 ASN A 316 1 24 HELIX 13 AB4 ARG A 318 GLY A 323 1 6 HELIX 14 AB5 LYS A 329 LEU A 333 5 5 HELIX 15 AB6 ARG A 336 ALA A 340 5 5 HELIX 16 AB7 GLN A 341 ASP A 364 1 24 HELIX 17 AB8 GLU A 373 ASP A 375 5 3 HELIX 18 AB9 ARG A 376 PHE A 389 1 14 HELIX 19 AC1 GLU A 390 ALA A 394 5 5 HELIX 20 AC2 ARG A 409 ARG A 425 1 17 HELIX 21 AC3 TYR A 437 GLY A 449 1 13 HELIX 22 AC4 ARG A 458 ALA A 475 1 18 HELIX 23 AC5 ASN A 488 ALA A 499 1 12 HELIX 24 AC6 TYR A 504 TYR A 508 5 5 HELIX 25 AC7 GLY A 517 GLU A 522 1 6 HELIX 26 AC8 LYS A 527 GLY A 531 5 5 HELIX 27 AC9 THR A 545 THR A 548 5 4 HELIX 28 AD1 LEU A 549 ALA A 562 1 14 HELIX 29 AD2 SER A 565 ALA A 571 1 7 HELIX 30 AD3 PRO A 576 VAL A 581 1 6 HELIX 31 AD4 ASP A 583 GLY A 596 1 14 SHEET 1 AA1 9 ARG A 281 MET A 286 0 SHEET 2 AA1 9 GLY A 325 ILE A 328 1 O SER A 327 N TYR A 284 SHEET 3 AA1 9 ILE A 367 ILE A 369 1 O ASN A 368 N ILE A 328 SHEET 4 AA1 9 ILE A 399 GLN A 404 1 O GLY A 400 N ILE A 367 SHEET 5 AA1 9 LEU A 428 VAL A 433 1 O VAL A 433 N ILE A 403 SHEET 6 AA1 9 ILE A 480 ALA A 485 1 O TYR A 481 N LEU A 428 SHEET 7 AA1 9 GLU A 509 LEU A 513 1 O GLU A 509 N PHE A 484 SHEET 8 AA1 9 CYS A 537 VAL A 543 1 O TYR A 540 N CYS A 512 SHEET 9 AA1 9 ARG A 281 MET A 286 1 N ARG A 281 O ILE A 539 SITE 1 AC1 37 ASP A 370 ALA A 371 VAL A 402 GLN A 404 SITE 2 AC1 37 TYR A 406 ARG A 431 VAL A 433 LYS A 434 SITE 3 AC1 37 GLY A 435 ALA A 436 TYR A 437 TRP A 438 SITE 4 AC1 37 TYR A 456 THR A 457 ARG A 458 LYS A 459 SITE 5 AC1 37 THR A 462 ALA A 485 THR A 486 HIS A 487 SITE 6 AC1 37 ASN A 488 GLN A 511 CYS A 512 LEU A 513 SITE 7 AC1 37 TYR A 540 ARG A 556 GLU A 559 THR A 564 SITE 8 AC1 37 SER A 565 PHE A 566 ZPJ A2002 HOH A2115 SITE 9 AC1 37 HOH A2136 HOH A2184 HOH A2205 HOH A2216 SITE 10 AC1 37 HOH A2280 SITE 1 AC2 6 LYS A 329 TYR A 540 TYR A 552 ARG A 555 SITE 2 AC2 6 ARG A 556 FAD A2001 SITE 1 AC3 7 THR A 422 ARG A 425 ARG A 426 LEU A 474 SITE 2 AC3 7 ASN A 478 LEU A 498 ALA A 499 SITE 1 AC4 7 ARG A 144 ASN A 207 LEU A 254 MET A 255 SITE 2 AC4 7 GLN A 258 LEU A 557 ASN A 560 CRYST1 72.991 141.738 146.299 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013700 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007055 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006835 0.00000