HEADER VIRAL PROTEIN, HYDROLASE/INHIBITOR 20-MAY-21 7MY5 TITLE THE CRYSTAL STRUCTURE OF WILD TYPE PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000988503 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SWL SOURCE 3 A/CALIFORNIA/04/2009 H1N1); SOURCE 4 ORGANISM_TAXID: 641501; SOURCE 5 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 6 GENE: PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN, HYDROLASE- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 3 18-OCT-23 7MY5 1 REMARK REVDAT 2 11-OCT-23 7MY5 1 JRNL REVDAT 1 25-MAY-22 7MY5 0 JRNL AUTH M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE JRNL TITL THE CRYSTAL STRUCTURE OF WILD TYPE PA ENDONUCLEASE JRNL TITL 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000988503 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, REMARK 1 AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, REMARK 1 AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, REMARK 1 AUTH 4 S.W.WHITE REMARK 1 TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF REMARK 1 TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS REMARK 1 TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE REMARK 1 TITL 4 RESISTANCE POTENTIAL. REMARK 1 REF EUR.J.MED.CHEM. V. 247 15035 2023 REMARK 1 REFN ISSN 0223-5234 REMARK 1 PMID 36603507 REMARK 1 DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.5400 - 3.7800 1.00 2800 139 0.1833 0.2056 REMARK 3 2 3.7800 - 3.0000 1.00 2648 141 0.2294 0.3027 REMARK 3 3 3.0000 - 2.6200 1.00 2639 120 0.2822 0.3551 REMARK 3 4 2.6200 - 2.3800 1.00 2560 173 0.2833 0.3507 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.362 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.095 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1561 REMARK 3 ANGLE : 0.533 2111 REMARK 3 CHIRALITY : 0.038 219 REMARK 3 PLANARITY : 0.003 266 REMARK 3 DIHEDRAL : 18.495 565 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9154 -28.2127 -3.1964 REMARK 3 T TENSOR REMARK 3 T11: 0.6893 T22: 0.7747 REMARK 3 T33: 0.6708 T12: -0.0297 REMARK 3 T13: -0.0364 T23: 0.1495 REMARK 3 L TENSOR REMARK 3 L11: 4.3231 L22: 4.0305 REMARK 3 L33: 9.2685 L12: 1.6402 REMARK 3 L13: -5.2145 L23: 1.0086 REMARK 3 S TENSOR REMARK 3 S11: -0.1577 S12: -0.4981 S13: 0.1145 REMARK 3 S21: 2.0493 S22: 0.3301 S23: 0.5852 REMARK 3 S31: 0.3452 S32: 0.8647 S33: -0.2693 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1150 -37.6881 -9.0913 REMARK 3 T TENSOR REMARK 3 T11: 0.5768 T22: 0.7779 REMARK 3 T33: 0.6761 T12: -0.0208 REMARK 3 T13: 0.0045 T23: 0.2978 REMARK 3 L TENSOR REMARK 3 L11: 2.8129 L22: 5.9312 REMARK 3 L33: 3.3388 L12: -0.1825 REMARK 3 L13: 0.8025 L23: 3.6225 REMARK 3 S TENSOR REMARK 3 S11: -0.3159 S12: -0.2672 S13: 0.1018 REMARK 3 S21: 0.6092 S22: 0.1380 S23: -0.3702 REMARK 3 S31: 0.6374 S32: 0.5550 S33: 0.1111 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1960 -48.4736 -22.1170 REMARK 3 T TENSOR REMARK 3 T11: 0.4657 T22: 0.6997 REMARK 3 T33: 0.5419 T12: -0.0385 REMARK 3 T13: 0.2029 T23: 0.1882 REMARK 3 L TENSOR REMARK 3 L11: 2.6772 L22: 8.2126 REMARK 3 L33: 4.5885 L12: -0.9149 REMARK 3 L13: -0.7665 L23: -1.0860 REMARK 3 S TENSOR REMARK 3 S11: -0.2774 S12: 0.4094 S13: -0.2788 REMARK 3 S21: -0.4763 S22: 0.0781 S23: -0.3358 REMARK 3 S31: 0.3595 S32: 0.5948 S33: 0.1534 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6058 -35.5099 -27.3392 REMARK 3 T TENSOR REMARK 3 T11: 0.7959 T22: 1.6962 REMARK 3 T33: 0.8128 T12: -0.2585 REMARK 3 T13: 0.1758 T23: 0.1029 REMARK 3 L TENSOR REMARK 3 L11: 7.2751 L22: 8.1322 REMARK 3 L33: 5.8325 L12: -2.0961 REMARK 3 L13: 0.4442 L23: 2.0670 REMARK 3 S TENSOR REMARK 3 S11: 0.8065 S12: 0.3002 S13: 1.2036 REMARK 3 S21: -0.9498 S22: 0.1398 S23: -1.1736 REMARK 3 S31: -0.8192 S32: 0.5732 S33: -1.0364 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8805 -36.7260 -29.4257 REMARK 3 T TENSOR REMARK 3 T11: 0.7026 T22: 0.8274 REMARK 3 T33: 0.6430 T12: -0.1362 REMARK 3 T13: 0.1273 T23: 0.2672 REMARK 3 L TENSOR REMARK 3 L11: 2.8724 L22: 6.6112 REMARK 3 L33: 3.9126 L12: -1.6981 REMARK 3 L13: -0.8739 L23: 4.7844 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: 0.5016 S13: 0.1623 REMARK 3 S21: -1.2959 S22: 0.0080 S23: -0.6037 REMARK 3 S31: -0.4713 S32: -0.3520 S33: -0.0096 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5680 -26.2069 -18.7077 REMARK 3 T TENSOR REMARK 3 T11: 0.5362 T22: 0.6137 REMARK 3 T33: 0.6107 T12: -0.1213 REMARK 3 T13: -0.0512 T23: 0.2941 REMARK 3 L TENSOR REMARK 3 L11: 3.9936 L22: 7.7098 REMARK 3 L33: 9.3243 L12: 1.4987 REMARK 3 L13: 3.5542 L23: 7.2467 REMARK 3 S TENSOR REMARK 3 S11: -0.0608 S12: -0.4874 S13: 0.2931 REMARK 3 S21: -0.5437 S22: -0.4706 S23: 0.1271 REMARK 3 S31: -0.7897 S32: -0.3248 S33: 0.2987 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2206 -22.5071 -13.1908 REMARK 3 T TENSOR REMARK 3 T11: 0.7851 T22: 1.0426 REMARK 3 T33: 0.9764 T12: -0.3730 REMARK 3 T13: -0.1042 T23: 0.2613 REMARK 3 L TENSOR REMARK 3 L11: 2.3653 L22: 2.5562 REMARK 3 L33: 8.1299 L12: -1.3000 REMARK 3 L13: -4.1672 L23: 3.0092 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: 0.3133 S13: 1.5484 REMARK 3 S21: -0.9770 S22: 0.4443 S23: -1.1913 REMARK 3 S31: -1.7318 S32: 1.1541 S33: -0.2542 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000257009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11227 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 74.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 1.00300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7LM4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.79550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.79550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.53800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.79550 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.79550 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.53800 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.79550 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.79550 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.53800 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.79550 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.79550 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.53800 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.79550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.79550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.53800 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.79550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.79550 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.53800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.79550 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.79550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.53800 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.79550 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.79550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.53800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -425.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -89.59100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -89.59100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -89.59100 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -89.59100 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -89.59100 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -89.59100 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 -89.59100 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 -89.59100 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 ILE A 85 CD1 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 113 CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 137 CD CE NZ REMARK 470 ILE A 138 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 125 -162.42 -103.99 REMARK 500 GLU A 141 -49.87 65.05 REMARK 500 THR A 162 -64.26 62.43 REMARK 500 GLN A 193 39.77 -83.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 204 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 98.0 REMARK 620 3 GLU A 119 OE2 164.2 91.4 REMARK 620 4 ILE A 120 O 78.8 90.6 88.4 REMARK 620 5 Y5V A 203 O13 97.3 107.9 91.8 161.5 REMARK 620 6 Y5V A 203 O15 80.8 173.0 88.4 82.4 79.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 90.8 REMARK 620 3 Y5V A 203 O13 122.3 85.4 REMARK 620 4 Y5V A 203 O10 87.6 160.9 79.5 REMARK 620 5 HOH A 301 O 84.1 90.8 153.3 107.9 REMARK 620 6 HOH A 303 O 159.5 77.7 74.1 108.7 79.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7LM4 RELATED DB: PDB REMARK 900 MUTANT DBREF 7MY5 A 1 50 UNP C3W5S0 C3W5S0_I09A0 1 50 DBREF 7MY5 A 73 196 UNP C3W5S0 C3W5S0_I09A0 73 196 SEQADV 7MY5 MET A -19 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 GLY A -18 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 SER A -17 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 SER A -16 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 HIS A -15 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 HIS A -14 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 HIS A -13 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 HIS A -12 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 HIS A -11 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 HIS A -10 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 SER A -9 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 SER A -8 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 GLY A -7 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 LEU A -6 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 VAL A -5 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 PRO A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 ARG A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 HIS A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 7MY5 GLY A 51 UNP C3W5S0 LINKER SEQADV 7MY5 GLY A 52 UNP C3W5S0 LINKER SEQADV 7MY5 SER A 53 UNP C3W5S0 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET Y5V A 203 29 HET QQ4 A 204 41 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HETNAM MN MANGANESE (II) ION HETNAM Y5V 5-HYDROXY-N-[2-(4-HYDROXY-3-METHOXYPHENYL)ETHYL]-2-(2- HETNAM 2 Y5V METHYLPHENYL)-6-OXO-1,6-DIHYDROPYRIMIDINE-4- HETNAM 3 Y5V CARBOXAMIDE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 Y5V C21 H21 N3 O5 FORMUL 5 QQ4 C36 H56 N6 O6 FORMUL 6 SO4 3(O4 S 2-) FORMUL 9 HOH *10(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 ILE A 138 1 13 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 SER A 184 1 21 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N PHE A 117 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.26 LINK OE1 GLU A 80 MN MN A 202 1555 1555 2.29 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.17 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.29 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.11 LINK O ILE A 120 MN MN A 201 1555 1555 2.19 LINK MN MN A 201 O13 Y5V A 203 1555 1555 2.14 LINK MN MN A 201 O15 Y5V A 203 1555 1555 2.16 LINK MN MN A 202 O13 Y5V A 203 1555 1555 2.26 LINK MN MN A 202 O10 Y5V A 203 1555 1555 1.88 LINK MN MN A 202 O HOH A 301 1555 1555 2.56 LINK MN MN A 202 O HOH A 303 1555 1555 2.20 CRYST1 89.591 89.591 133.076 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011162 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007515 0.00000